Wall clock time and date at job start Tue Mar 31 2020 13:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47277 * 2 1 4 4 C 1.50708 * 109.46698 * 120.00202 * 2 1 3 5 5 H 1.07999 * 119.99529 * 119.99725 * 4 2 1 6 6 C 1.37871 * 119.99671 * 299.99590 * 4 2 1 7 7 N 1.31516 * 120.00292 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99658 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46890 * 59.99961 * 8 6 4 10 10 H 1.48500 * 109.47041 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46905 * 299.99836 * 8 6 4 12 12 N 1.46493 * 109.46983 * 239.99964 * 2 1 3 13 13 C 1.34774 * 120.00253 * 85.00570 * 12 2 1 14 14 O 1.21595 * 119.99607 * 359.97438 * 13 12 2 15 15 N 1.34773 * 120.00261 * 180.02562 * 13 12 2 16 16 C 1.40176 * 120.00125 * 175.60331 * 15 13 12 17 17 C 1.38707 * 120.08450 * 30.62084 * 16 15 13 18 18 C 1.38210 * 119.98037 * 180.02562 * 17 16 15 19 19 C 1.38272 * 120.16418 * 0.02562 * 18 17 16 20 20 C 1.38251 * 120.17329 * 359.68376 * 19 18 17 21 21 C 1.38541 * 120.01452 * 0.58953 * 20 19 18 22 22 O 1.35982 * 120.08577 * 179.70371 * 21 20 19 23 23 C 1.42905 * 116.99578 * 5.46882 * 22 21 20 24 24 H 1.08994 * 110.46128 * 33.89782 * 23 22 21 25 25 C 1.54509 * 110.51516 * 156.51091 * 23 22 21 26 26 C 1.54472 * 104.06609 * 118.77612 * 25 23 22 27 27 O 1.44426 * 104.80184 * 23.98188 * 26 25 23 28 28 C 1.44420 * 105.27630 * 319.48352 * 27 26 25 29 29 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46912 * 300.00319 * 1 2 3 31 31 H 1.09009 * 109.46831 * 59.99818 * 1 2 3 32 32 H 0.97006 * 119.99746 * 179.97438 * 7 6 4 33 33 H 0.97003 * 120.00130 * 265.00589 * 12 2 1 34 34 H 0.96998 * 120.00372 * 355.59812 * 15 13 12 35 35 H 1.07991 * 120.01306 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.91693 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.91037 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.99145 * 180.29988 * 20 19 18 39 39 H 1.08996 * 110.51253 * 237.42776 * 25 23 22 40 40 H 1.09006 * 110.50441 * 359.97438 * 25 23 22 41 41 H 1.09002 * 110.37465 * 142.80693 * 26 25 23 42 42 H 1.08999 * 110.37905 * 265.14972 * 26 25 23 43 43 H 1.08994 * 110.37714 * 281.68490 * 28 27 26 44 44 H 1.09002 * 110.37268 * 159.33825 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1197 4.0080 9 1 3.8073 -1.1192 4.0077 10 1 1.8278 -0.4193 5.2205 11 1 1.8277 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8576 1.1614 -2.4117 15 7 2.5959 -0.6537 -3.4576 16 6 2.6427 0.0201 -4.6859 17 6 2.8576 1.3900 -4.7197 18 6 2.9028 2.0523 -5.9320 19 6 2.7339 1.3527 -7.1126 20 6 2.5253 -0.0138 -7.0869 21 6 2.4730 -0.6841 -5.8756 22 8 2.2619 -2.0272 -5.8483 23 6 2.2224 -2.7033 -7.1067 24 1 2.9095 -2.2360 -7.8121 25 6 2.5641 -4.1995 -6.9285 26 6 1.2938 -4.9347 -7.4102 27 8 0.6455 -4.0039 -8.3042 28 6 0.7859 -2.7115 -7.6752 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 0.7081 1.1609 3.4844 33 1 2.2489 -1.6318 -1.1526 34 1 2.8865 -1.5774 -3.3998 35 1 2.9894 1.9390 -3.7991 36 1 3.0706 3.1189 -5.9571 37 1 2.7696 1.8744 -8.0576 38 1 2.3986 -0.5580 -8.0111 39 1 3.4202 -4.4719 -7.5456 40 1 2.7636 -4.4234 -5.8805 41 1 1.5622 -5.8473 -7.9423 42 1 0.6445 -5.1641 -6.5653 43 1 0.0590 -2.5998 -6.8709 44 1 0.6645 -1.9163 -8.4108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162781816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:34 Heat of formation + Delta-G solvation = -77.026573 kcal Electronic energy + Delta-G solvation = -26852.423242 eV Core-core repulsion = 22963.592915 eV Total energy + Delta-G solvation = -3888.830327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88467 -39.82885 -38.69031 -37.06983 -35.12558 -34.14730 -32.42838 -31.91020 -30.17023 -29.63034 -29.06576 -27.97138 -25.25288 -23.76527 -23.28665 -22.48168 -21.37167 -20.82694 -19.79795 -18.72357 -18.09343 -17.35814 -16.74735 -16.12716 -16.02121 -15.73459 -15.34339 -15.10928 -14.92093 -14.63917 -14.27095 -14.12067 -13.84645 -13.53456 -13.42706 -12.99947 -12.60085 -12.39935 -12.29448 -11.82320 -11.77678 -11.71502 -11.57774 -11.10542 -11.03397 -10.98917 -10.91441 -10.76054 -10.35254 -10.23372 -10.21186 -10.09440 -9.31833 -9.05711 -8.58304 -8.49402 -8.03970 -7.56394 -6.13039 -4.22403 1.41233 1.44475 2.82044 3.19948 3.25236 3.30647 3.33101 3.63670 3.66907 4.00537 4.08864 4.31134 4.31879 4.45019 4.74835 4.79420 4.85021 4.90214 4.98066 5.19082 5.20710 5.25703 5.31178 5.40886 5.43164 5.49236 5.52688 5.66108 5.93241 6.19207 6.28196 6.33878 6.58868 6.74099 6.80393 6.95647 6.99542 7.12680 7.23974 7.39913 7.47235 7.61657 7.83694 8.00142 8.15011 8.72526 8.84768 9.23939 9.46135 10.92948 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.003008 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.318472 B = 9307.026567 C =10609.740505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.718 5.718 13 C 0.694 3.306 14 O -0.584 6.584 15 N -0.687 5.687 16 C 0.159 3.841 17 C -0.093 4.093 18 C -0.133 4.133 19 C -0.110 4.110 20 C -0.192 4.192 21 C 0.084 3.916 22 O -0.303 6.303 23 C 0.054 3.946 24 H 0.090 0.910 25 C -0.153 4.153 26 C 0.045 3.955 27 O -0.370 6.370 28 C 0.024 3.976 29 H 0.025 0.975 30 H 0.091 0.909 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.405 0.595 35 H 0.158 0.842 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 -7.691 -21.272 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.369 5.369 13 C 0.394 3.606 14 O -0.462 6.462 15 N -0.335 5.335 16 C 0.062 3.938 17 C -0.114 4.114 18 C -0.152 4.152 19 C -0.130 4.130 20 C -0.211 4.211 21 C 0.037 3.963 22 O -0.217 6.217 23 C -0.003 4.003 24 H 0.107 0.893 25 C -0.190 4.190 26 C -0.032 4.032 27 O -0.289 6.289 28 C -0.053 4.053 29 H 0.045 0.955 30 H 0.109 0.891 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.239 0.761 35 H 0.176 0.824 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.545 -6.686 -21.044 22.363 hybrid contribution 0.593 -1.297 0.856 1.663 sum 4.138 -7.983 -20.188 22.100 Atomic orbital electron populations 1.22106 0.98538 0.99095 1.00934 1.18678 0.90854 0.93737 0.78807 0.93228 1.21176 1.32593 1.13297 0.90279 0.92127 1.24875 0.94804 0.94964 0.99011 1.69897 1.35715 1.22398 1.24024 0.86492 0.79151 0.79566 0.81776 1.20178 1.21111 1.20170 1.45861 1.68489 1.13305 1.09231 1.16146 0.78551 0.85468 0.80406 1.90827 1.57278 1.14141 1.83958 1.42657 1.68215 1.16291 1.06293 1.16944 1.02762 0.91746 0.82391 1.21530 0.97558 0.92292 1.00015 1.21031 1.02224 1.00117 0.91790 1.20842 1.00564 0.93254 0.98305 1.20951 1.08633 0.95746 0.95774 1.18697 1.01633 0.82719 0.93221 1.86114 1.87335 1.17612 1.30671 1.23766 0.97801 0.93376 0.85390 0.89263 1.23011 0.99380 0.92316 1.04326 1.23448 0.92288 0.93457 0.94012 1.89159 1.78429 1.16948 1.44364 1.23994 0.95971 0.86838 0.98525 0.95545 0.89088 0.96578 0.92480 0.78162 0.76065 0.82449 0.85716 0.86072 0.85593 0.89284 0.88601 0.88555 0.91574 0.90670 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.28 7.16 2.56 -69.08 -0.18 6.98 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.72 -15.07 5.07 -59.81 -0.30 -15.37 16 13 C 0.69 14.27 8.40 -86.92 -0.73 13.54 16 14 O -0.58 -13.96 13.18 5.28 0.07 -13.89 16 15 N -0.69 -11.21 5.24 -14.10 -0.07 -11.29 16 16 C 0.16 2.49 6.39 -83.48 -0.53 1.96 16 17 C -0.09 -1.49 8.73 -39.42 -0.34 -1.84 16 18 C -0.13 -1.70 10.04 -39.58 -0.40 -2.10 16 19 C -0.11 -1.22 10.04 -39.56 -0.40 -1.62 16 20 C -0.19 -2.14 8.86 -39.46 -0.35 -2.49 16 21 C 0.08 1.11 6.68 -39.08 -0.26 0.85 16 22 O -0.30 -3.58 9.28 -19.68 -0.18 -3.76 16 23 C 0.05 0.48 2.94 -25.16 -0.07 0.41 16 24 H 0.09 0.70 6.30 -51.93 -0.33 0.38 16 25 C -0.15 -1.11 6.90 -25.17 -0.17 -1.28 16 26 C 0.04 0.34 7.63 37.93 0.29 0.63 16 27 O -0.37 -3.73 11.65 -35.23 -0.41 -4.14 16 28 C 0.02 0.22 7.08 37.94 0.27 0.49 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 31 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.39 6.98 8.56 -40.82 -0.35 6.64 16 34 H 0.40 5.51 8.49 -40.82 -0.35 5.17 16 35 H 0.16 2.90 5.89 -52.49 -0.31 2.59 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 1.08 5.52 -52.49 -0.29 0.79 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.70 8.00 -51.93 -0.42 0.28 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 44 H 0.10 0.79 7.70 -51.93 -0.40 0.39 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -31.47 361.20 -8.85 -40.32 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.07 Total: 11.92 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.93 Total: -0.56 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.25 Total: -50.83 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.52 Total: -21.79 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.47 -8.85 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162781816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.710 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds