Wall clock time and date at job start Tue Mar 31 2020 13:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46655 * 2 1 4 4 C 1.50698 * 109.47104 * 239.99700 * 2 1 3 5 5 H 1.08000 * 120.00148 * 239.99929 * 4 2 1 6 6 C 1.37880 * 119.99792 * 60.00176 * 4 2 1 7 7 N 1.31511 * 120.00157 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99921 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47428 * 89.99764 * 8 6 4 10 10 H 1.48498 * 109.47235 * 210.00346 * 8 6 4 11 11 H 1.48503 * 109.46901 * 329.99987 * 8 6 4 12 12 N 1.46503 * 109.46739 * 119.99703 * 2 1 3 13 13 C 1.34771 * 119.99871 * 275.00104 * 12 2 1 14 14 O 1.21588 * 120.00281 * 359.97438 * 13 12 2 15 15 N 1.34778 * 119.99736 * 180.02562 * 13 12 2 16 16 C 1.40163 * 119.99985 * 174.07862 * 15 13 12 17 17 C 1.38703 * 120.08924 * 335.32959 * 16 15 13 18 18 C 1.38208 * 119.98341 * 180.02562 * 17 16 15 19 19 C 1.38267 * 120.16549 * 0.02562 * 18 17 16 20 20 C 1.38252 * 120.17583 * 359.67966 * 19 18 17 21 21 C 1.38556 * 120.00929 * 0.59388 * 20 19 18 22 22 O 1.35981 * 120.07789 * 179.70047 * 21 20 19 23 23 C 1.42907 * 117.00183 * 5.67358 * 22 21 20 24 24 H 1.08995 * 110.45222 * 24.99638 * 23 22 21 25 25 C 1.54506 * 110.50679 * 147.60464 * 23 22 21 26 26 C 1.54482 * 104.06357 * 118.78567 * 25 23 22 27 27 O 1.44428 * 104.79968 * 23.96912 * 26 25 23 28 28 C 1.44413 * 105.27949 * 319.49057 * 27 26 25 29 29 H 1.08990 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47191 * 300.00314 * 1 2 3 31 31 H 1.09009 * 109.46526 * 60.00218 * 1 2 3 32 32 H 0.97006 * 120.00282 * 179.97438 * 7 6 4 33 33 H 0.97001 * 119.99511 * 95.00087 * 12 2 1 34 34 H 0.97000 * 119.99742 * 354.08206 * 15 13 12 35 35 H 1.07997 * 120.00917 * 359.97438 * 17 16 15 36 36 H 1.08009 * 119.91794 * 179.97438 * 18 17 16 37 37 H 1.07994 * 119.91410 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.99610 * 180.30346 * 20 19 18 39 39 H 1.09005 * 110.50414 * 237.42130 * 25 23 22 40 40 H 1.09000 * 110.51787 * 359.97438 * 25 23 22 41 41 H 1.08999 * 110.37547 * 142.80273 * 26 25 23 42 42 H 1.08999 * 110.36684 * 265.14337 * 26 25 23 43 43 H 1.08996 * 110.37706 * 281.68144 * 28 27 26 44 44 H 1.09001 * 110.37443 * 159.34384 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3449 -2.1617 -4.4123 10 1 2.4874 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7118 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3571 14 8 1.8583 1.1617 2.4116 15 7 2.5966 -0.6534 3.4575 16 6 2.8486 0.0707 4.6309 17 6 3.1388 1.4253 4.5634 18 6 3.3873 2.1370 5.7217 19 6 3.3481 1.5020 6.9493 20 6 3.0536 0.1533 7.0249 21 6 2.8088 -0.5685 5.8678 22 8 2.5249 -1.8964 5.9401 23 6 2.3724 -2.4571 7.2457 24 1 2.0762 -1.6875 7.9585 25 6 1.3366 -3.6034 7.2249 26 6 2.1415 -4.8447 7.6695 27 8 3.2508 -4.3134 8.4266 28 6 3.6806 -3.1415 7.7003 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 0.7088 1.1612 -3.4845 33 1 2.2490 -1.6317 1.1527 34 1 2.7459 -1.6116 3.4373 35 1 3.1713 1.9236 3.6058 36 1 3.6136 3.1918 5.6679 37 1 3.5435 2.0619 7.8518 38 1 3.0190 -0.3387 7.9856 39 1 0.5284 -3.4005 7.9276 40 1 0.9406 -3.7422 6.2189 41 1 1.5276 -5.4899 8.2979 42 1 2.5036 -5.3934 6.8001 43 1 4.2787 -3.4290 6.8357 44 1 4.2490 -2.4782 8.3524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162781958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:37 Heat of formation + Delta-G solvation = -75.426280 kcal Electronic energy + Delta-G solvation = -26790.106770 eV Core-core repulsion = 22901.345837 eV Total energy + Delta-G solvation = -3888.760933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88317 -39.85183 -38.71424 -37.06776 -35.13978 -34.16974 -32.44022 -31.89710 -30.15904 -29.67070 -29.06242 -27.97873 -25.26308 -23.84684 -23.23985 -22.51353 -21.39280 -20.80148 -19.80076 -18.76500 -18.09324 -17.36743 -16.71368 -16.09077 -16.02519 -15.80172 -15.47529 -15.10177 -14.69543 -14.51804 -14.51302 -14.16767 -13.85179 -13.51018 -13.41478 -12.99420 -12.54277 -12.41987 -12.38980 -11.86731 -11.81152 -11.66348 -11.59955 -11.11254 -11.04269 -10.98458 -10.87002 -10.77366 -10.35981 -10.24533 -10.23294 -10.15508 -9.34551 -9.05483 -8.59117 -8.49097 -8.03580 -7.52418 -6.13984 -4.23188 1.42257 1.44588 2.81951 3.18611 3.23536 3.30852 3.33939 3.62589 3.63365 4.02725 4.09939 4.31070 4.32570 4.44106 4.73894 4.79431 4.85165 4.90020 4.95817 5.17812 5.19150 5.25286 5.30936 5.39417 5.43165 5.51244 5.53722 5.66393 5.92864 6.17597 6.27440 6.33222 6.59604 6.73676 6.79360 6.95037 6.98055 7.11844 7.22826 7.39655 7.45665 7.61151 7.82591 7.98855 8.13918 8.71495 8.83431 9.22018 9.45240 10.92057 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.002936 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.895972 B = 9535.147944 C =10798.163600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.718 5.718 13 C 0.693 3.307 14 O -0.582 6.582 15 N -0.686 5.686 16 C 0.164 3.836 17 C -0.100 4.100 18 C -0.129 4.129 19 C -0.114 4.114 20 C -0.190 4.190 21 C 0.080 3.920 22 O -0.304 6.304 23 C 0.052 3.948 24 H 0.093 0.907 25 C -0.156 4.156 26 C 0.045 3.955 27 O -0.370 6.370 28 C 0.028 3.972 29 H 0.025 0.975 30 H 0.015 0.985 31 H 0.091 0.909 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.406 0.594 35 H 0.159 0.841 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 -7.024 21.334 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.369 5.369 13 C 0.394 3.606 14 O -0.461 6.461 15 N -0.333 5.333 16 C 0.067 3.933 17 C -0.120 4.120 18 C -0.148 4.148 19 C -0.133 4.133 20 C -0.209 4.209 21 C 0.033 3.967 22 O -0.219 6.219 23 C -0.005 4.005 24 H 0.111 0.889 25 C -0.194 4.194 26 C -0.031 4.031 27 O -0.289 6.289 28 C -0.050 4.050 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.240 0.760 35 H 0.176 0.824 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.360 -6.068 21.103 22.213 hybrid contribution 0.295 -1.255 -0.841 1.539 sum 3.655 -7.323 20.262 21.852 Atomic orbital electron populations 1.22111 0.98549 0.99102 1.00959 1.18691 0.90852 0.93758 0.78816 0.93204 1.21208 1.32532 1.13291 0.90243 0.92061 1.24877 0.94815 0.94953 0.99030 1.69903 1.35810 1.22385 1.23927 0.86431 0.79156 0.79254 0.82146 1.20551 1.21047 1.19855 1.45882 1.68494 1.13436 1.09040 1.16144 0.78556 0.85531 0.80399 1.90828 1.56778 1.14356 1.84099 1.42708 1.69449 1.11353 1.09801 1.16951 1.01726 0.91787 0.82879 1.21510 0.97491 0.92032 1.01008 1.21019 1.01822 1.00104 0.91882 1.20824 1.00896 0.93731 0.97863 1.20933 1.07766 0.95728 0.96476 1.18601 1.02130 0.83175 0.92806 1.86080 1.86071 1.20525 1.29211 1.23810 0.95953 0.96314 0.84441 0.88931 1.23064 0.98093 0.93886 1.04358 1.23443 0.87700 0.95632 0.96358 1.89160 1.49759 1.42031 1.47965 1.23903 0.96029 0.87552 0.97471 0.95537 0.96568 0.89073 0.92532 0.78136 0.75967 0.82398 0.85713 0.86092 0.85506 0.89346 0.88601 0.88571 0.91608 0.90759 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.28 7.11 2.56 -69.08 -0.18 6.93 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.71 11.32 55.43 0.63 -24.09 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.72 -14.99 5.07 -59.81 -0.30 -15.29 16 13 C 0.69 14.20 8.33 -86.92 -0.72 13.47 16 14 O -0.58 -13.87 13.18 5.29 0.07 -13.81 16 15 N -0.69 -11.21 5.30 -14.11 -0.07 -11.28 16 16 C 0.16 2.58 6.45 -83.49 -0.54 2.05 16 17 C -0.10 -1.61 8.72 -39.42 -0.34 -1.95 16 18 C -0.13 -1.68 10.04 -39.58 -0.40 -2.07 16 19 C -0.11 -1.27 10.04 -39.57 -0.40 -1.66 16 20 C -0.19 -2.12 8.98 -39.46 -0.35 -2.47 16 21 C 0.08 1.05 6.69 -39.07 -0.26 0.79 16 22 O -0.30 -3.57 9.19 -19.68 -0.18 -3.75 16 23 C 0.05 0.47 3.08 -25.16 -0.08 0.39 16 24 H 0.09 0.76 5.76 -51.93 -0.30 0.46 16 25 C -0.16 -1.20 6.90 -25.16 -0.17 -1.37 16 26 C 0.05 0.33 7.63 37.94 0.29 0.62 16 27 O -0.37 -3.57 11.65 -35.23 -0.41 -3.98 16 28 C 0.03 0.24 7.38 37.93 0.28 0.52 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 2.46 6.07 -51.92 -0.32 2.15 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.95 8.56 -40.82 -0.35 6.60 16 34 H 0.41 5.56 8.36 -40.82 -0.34 5.22 16 35 H 0.16 2.95 5.79 -52.49 -0.30 2.64 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.08 5.90 -52.49 -0.31 0.77 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.77 8.00 -51.93 -0.42 0.36 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -31.29 361.77 -8.84 -40.13 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.07 Total: 11.92 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.93 Total: -0.79 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.25 Total: -50.66 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.52 Total: -21.54 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.29 -8.84 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162781958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.301 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds