Wall clock time and date at job start Tue Mar 31 2020 13:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46655 * 2 1 4 4 C 1.50698 * 109.47104 * 239.99700 * 2 1 3 5 5 H 1.08000 * 120.00148 * 239.99929 * 4 2 1 6 6 C 1.37880 * 119.99792 * 60.00176 * 4 2 1 7 7 N 1.31511 * 120.00157 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99921 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47428 * 89.99764 * 8 6 4 10 10 H 1.48498 * 109.47235 * 210.00346 * 8 6 4 11 11 H 1.48503 * 109.46901 * 329.99987 * 8 6 4 12 12 N 1.46503 * 109.46739 * 119.99703 * 2 1 3 13 13 C 1.34771 * 119.99871 * 275.00104 * 12 2 1 14 14 O 1.21588 * 120.00281 * 359.97438 * 13 12 2 15 15 N 1.34778 * 119.99736 * 180.02562 * 13 12 2 16 16 C 1.40163 * 119.99985 * 174.07862 * 15 13 12 17 17 C 1.38703 * 120.08924 * 335.32959 * 16 15 13 18 18 C 1.38208 * 119.98341 * 180.02562 * 17 16 15 19 19 C 1.38267 * 120.16549 * 0.02562 * 18 17 16 20 20 C 1.38252 * 120.17583 * 359.67966 * 19 18 17 21 21 C 1.38556 * 120.00929 * 0.59388 * 20 19 18 22 22 O 1.35981 * 120.07789 * 179.70047 * 21 20 19 23 23 C 1.42907 * 117.00183 * 5.67358 * 22 21 20 24 24 H 1.08995 * 110.45222 * 24.99638 * 23 22 21 25 25 C 1.54506 * 110.50679 * 147.60464 * 23 22 21 26 26 C 1.54482 * 104.06357 * 118.78567 * 25 23 22 27 27 O 1.44428 * 104.79968 * 23.96912 * 26 25 23 28 28 C 1.44413 * 105.27949 * 319.49057 * 27 26 25 29 29 H 1.08990 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47191 * 300.00314 * 1 2 3 31 31 H 1.09009 * 109.46526 * 60.00218 * 1 2 3 32 32 H 0.97006 * 120.00282 * 179.97438 * 7 6 4 33 33 H 0.97001 * 119.99511 * 95.00087 * 12 2 1 34 34 H 0.97000 * 119.99742 * 354.08206 * 15 13 12 35 35 H 1.07997 * 120.00917 * 359.97438 * 17 16 15 36 36 H 1.08009 * 119.91794 * 179.97438 * 18 17 16 37 37 H 1.07994 * 119.91410 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.99610 * 180.30346 * 20 19 18 39 39 H 1.09005 * 110.50414 * 237.42130 * 25 23 22 40 40 H 1.09000 * 110.51787 * 359.97438 * 25 23 22 41 41 H 1.08999 * 110.37547 * 142.80273 * 26 25 23 42 42 H 1.08999 * 110.36684 * 265.14337 * 26 25 23 43 43 H 1.08996 * 110.37706 * 281.68144 * 28 27 26 44 44 H 1.09001 * 110.37443 * 159.34384 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3449 -2.1617 -4.4123 10 1 2.4874 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7118 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3571 14 8 1.8583 1.1617 2.4116 15 7 2.5966 -0.6534 3.4575 16 6 2.8486 0.0707 4.6309 17 6 3.1388 1.4253 4.5634 18 6 3.3873 2.1370 5.7217 19 6 3.3481 1.5020 6.9493 20 6 3.0536 0.1533 7.0249 21 6 2.8088 -0.5685 5.8678 22 8 2.5249 -1.8964 5.9401 23 6 2.3724 -2.4571 7.2457 24 1 2.0762 -1.6875 7.9585 25 6 1.3366 -3.6034 7.2249 26 6 2.1415 -4.8447 7.6695 27 8 3.2508 -4.3134 8.4266 28 6 3.6806 -3.1415 7.7003 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 0.7088 1.1612 -3.4845 33 1 2.2490 -1.6317 1.1527 34 1 2.7459 -1.6116 3.4373 35 1 3.1713 1.9236 3.6058 36 1 3.6136 3.1918 5.6679 37 1 3.5435 2.0619 7.8518 38 1 3.0190 -0.3387 7.9856 39 1 0.5284 -3.4005 7.9276 40 1 0.9406 -3.7422 6.2189 41 1 1.5276 -5.4899 8.2979 42 1 2.5036 -5.3934 6.8001 43 1 4.2787 -3.4290 6.8357 44 1 4.2490 -2.4782 8.3524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162781958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:36 Heat of formation + Delta-G solvation = -96.843180 kcal Electronic energy + Delta-G solvation = -26791.035477 eV Core-core repulsion = 22901.345837 eV Total energy + Delta-G solvation = -3889.689639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94715 -41.00842 -39.76115 -38.04277 -36.88454 -35.67163 -34.34721 -32.60990 -31.46902 -30.80630 -30.00131 -29.29538 -27.34258 -24.80401 -24.19314 -23.54040 -22.71439 -21.90763 -21.43855 -19.89193 -19.55630 -18.47726 -17.85721 -17.46898 -17.04378 -16.79712 -16.76233 -16.28282 -15.98426 -15.87912 -15.62216 -15.35595 -15.00639 -14.96136 -14.41468 -14.20606 -14.06161 -13.80214 -13.40329 -13.14086 -12.99605 -12.90558 -12.73197 -12.64153 -12.57108 -12.40621 -12.29053 -12.13351 -11.80818 -11.59829 -11.49994 -11.10630 -10.95029 -10.86927 -10.61584 -9.86005 -9.51814 -8.70145 -8.18153 -6.35561 0.35684 0.42998 1.45074 1.46046 1.56319 1.72701 2.02037 2.16250 2.41873 2.88316 3.01066 3.12391 3.39331 3.44546 3.69952 3.75568 3.96181 4.05173 4.16939 4.19602 4.30200 4.49340 4.56055 4.63453 4.70405 4.73443 4.79848 4.81055 4.90729 4.93085 4.97208 5.08063 5.14517 5.32862 5.39134 5.54733 5.57314 5.62041 5.64771 5.68178 5.83726 5.90225 6.08214 6.24242 6.42524 6.71835 7.19419 7.33060 7.64695 8.88418 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.002936 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.895972 B = 9535.147944 C =10798.163600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.290 3.710 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.714 5.714 13 C 0.693 3.307 14 O -0.621 6.621 15 N -0.670 5.670 16 C 0.126 3.874 17 C -0.125 4.125 18 C -0.137 4.137 19 C -0.098 4.098 20 C -0.184 4.184 21 C 0.087 3.913 22 O -0.313 6.313 23 C 0.045 3.955 24 H 0.107 0.893 25 C -0.155 4.155 26 C 0.043 3.957 27 O -0.386 6.386 28 C 0.029 3.971 29 H 0.039 0.961 30 H 0.010 0.990 31 H 0.069 0.931 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.418 0.582 35 H 0.121 0.879 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.286 -8.757 23.640 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.186 3.814 3 H 0.019 0.981 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.367 5.367 13 C 0.393 3.607 14 O -0.502 6.502 15 N -0.318 5.318 16 C 0.030 3.970 17 C -0.146 4.146 18 C -0.155 4.155 19 C -0.117 4.117 20 C -0.202 4.202 21 C 0.040 3.960 22 O -0.228 6.228 23 C -0.011 4.011 24 H 0.125 0.875 25 C -0.193 4.193 26 C -0.033 4.033 27 O -0.306 6.306 28 C -0.048 4.048 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.255 0.745 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.178 0.822 38 H 0.179 0.821 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.132 0.868 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.993 -7.855 23.469 25.069 hybrid contribution 0.125 -0.703 -1.384 1.557 sum 4.117 -8.558 22.085 24.041 Atomic orbital electron populations 1.21927 0.98410 0.99405 0.99557 1.18265 0.90880 0.91729 0.80525 0.98063 1.21522 1.32747 1.13654 0.90682 0.90884 1.25791 0.94850 0.95570 1.02265 1.70051 1.36890 1.23844 1.24687 0.85313 0.78936 0.78018 0.77860 1.19591 1.21169 1.18903 1.45485 1.68891 1.13999 1.08281 1.16223 0.78365 0.85038 0.81055 1.90811 1.58329 1.16196 1.84862 1.42357 1.68622 1.11789 1.09016 1.17169 1.04325 0.92058 0.83411 1.21338 0.99752 0.92742 1.00762 1.21237 1.01682 1.00918 0.91703 1.21263 0.98278 0.93891 0.98225 1.21357 1.06025 0.95780 0.97073 1.18613 1.01206 0.83934 0.92268 1.86081 1.85806 1.19734 1.31184 1.24074 0.96693 0.96947 0.83410 0.87531 1.23101 0.98217 0.93504 1.04435 1.23580 0.87375 0.95714 0.96669 1.89148 1.50467 1.42415 1.48522 1.23930 0.95814 0.87583 0.97519 0.94174 0.97090 0.91251 0.92466 0.76317 0.74531 0.86112 0.84162 0.82226 0.82088 0.87822 0.89280 0.86768 0.91604 0.91549 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.26 16 2 C 0.29 15.26 2.56 44.25 0.11 15.38 16 3 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 4 C -0.55 -29.17 8.73 25.60 0.22 -28.95 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -52.65 11.32 21.45 0.24 -52.41 16 8 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 12 N -0.71 -30.74 5.07 -461.40 -2.34 -33.08 16 13 C 0.69 29.66 8.33 179.06 1.49 31.15 16 14 O -0.62 -31.57 13.18 -3.99 -0.05 -31.62 16 15 N -0.67 -22.43 5.30 -316.81 -1.68 -24.11 16 16 C 0.13 4.02 6.45 38.17 0.25 4.27 16 17 C -0.13 -4.18 8.72 22.37 0.20 -3.99 16 18 C -0.14 -3.42 10.04 22.27 0.22 -3.19 16 19 C -0.10 -1.84 10.04 22.28 0.22 -1.62 16 20 C -0.18 -3.47 8.98 22.35 0.20 -3.27 16 21 C 0.09 2.15 6.69 22.60 0.15 2.30 16 22 O -0.31 -6.79 9.19 -93.34 -0.86 -7.64 16 23 C 0.05 0.69 3.08 31.61 0.10 0.78 16 24 H 0.11 1.32 5.76 -2.39 -0.01 1.30 16 25 C -0.16 -2.00 6.90 31.61 0.22 -1.79 16 26 C 0.04 0.53 7.63 72.49 0.55 1.09 16 27 O -0.39 -6.52 11.65 -148.98 -1.74 -8.26 16 28 C 0.03 0.42 7.38 72.49 0.54 0.95 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 3.89 6.07 -2.38 -0.01 3.88 16 32 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 33 H 0.40 14.55 8.56 -92.71 -0.79 13.75 16 34 H 0.42 11.49 8.36 -92.71 -0.78 10.72 16 35 H 0.12 4.93 5.79 -2.91 -0.02 4.91 16 36 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.16 1.93 5.90 -2.91 -0.02 1.91 16 39 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.09 1.29 8.00 -2.39 -0.02 1.27 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 44 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.71 361.77 0.67 -70.04 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.52 Total: 34.91 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 5.59 Total: 8.14 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.78 Total: -109.60 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -2.65 Total: -47.52 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -70.71 0.67 -70.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162781958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.801 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds