Wall clock time and date at job start Tue Mar 31 2020 13:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00128 * 2 1 4 4 O 1.21290 * 119.99508 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00349 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46537 * 60.00228 * 5 3 2 7 7 C 1.52995 * 109.47041 * 300.00414 * 5 3 2 8 8 C 1.52998 * 109.47172 * 180.02562 * 5 3 2 9 9 N 1.46503 * 109.47261 * 185.00066 * 8 5 3 10 10 C 1.46499 * 119.99753 * 270.00377 * 9 8 5 11 11 C 1.34777 * 119.99990 * 89.99513 * 9 8 5 12 12 O 1.21592 * 119.99920 * 355.11189 * 11 9 8 13 13 C 1.47528 * 120.00082 * 175.10482 * 11 9 8 14 14 C 1.39676 * 120.19305 * 316.89287 * 13 11 9 15 15 C 1.37832 * 119.91146 * 179.97438 * 14 13 11 16 16 C 1.38562 * 120.32829 * 0.02562 * 15 14 13 17 17 C 1.38031 * 120.40306 * 0.02562 * 16 15 14 18 18 C 1.38834 * 120.06976 * 359.96375 * 17 16 15 19 19 O 1.35519 * 120.15727 * 180.02562 * 18 17 16 20 20 C 1.34809 * 117.00098 * 354.47350 * 19 18 17 21 21 H 1.07998 * 120.00323 * 4.24565 * 20 19 18 22 22 C 1.38701 * 119.99684 * 184.24535 * 20 19 18 23 23 N 1.31520 * 120.00235 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99955 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47125 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47020 * 119.99495 * 24 22 20 27 27 H 1.48492 * 109.47154 * 239.99841 * 24 22 20 28 28 H 1.08996 * 109.46595 * 299.99659 * 1 2 3 29 29 H 1.09001 * 109.46761 * 59.99679 * 1 2 3 30 30 H 1.09002 * 109.46914 * 179.97438 * 1 2 3 31 31 H 0.97002 * 120.00295 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47063 * 60.00070 * 7 5 3 33 33 H 1.09006 * 109.47099 * 179.97438 * 7 5 3 34 34 H 1.09000 * 109.47419 * 300.00271 * 7 5 3 35 35 H 1.09001 * 109.46918 * 65.00039 * 8 5 3 36 36 H 1.08998 * 109.47066 * 305.00218 * 8 5 3 37 37 H 1.08996 * 109.46851 * 264.83644 * 10 9 8 38 38 H 1.08996 * 109.47477 * 24.83345 * 10 9 8 39 39 H 1.09003 * 109.47089 * 144.84084 * 10 9 8 40 40 H 1.07990 * 120.04239 * 0.02562 * 14 13 11 41 41 H 1.08008 * 119.83373 * 180.29393 * 15 14 13 42 42 H 1.08005 * 119.80134 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.96174 * 179.97438 * 17 16 15 44 44 H 0.97002 * 120.00115 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6460 1.1672 -0.0006 6 1 4.0088 0.6537 -0.8908 7 6 4.1564 0.4457 1.2482 8 6 4.1559 2.6097 0.0002 9 7 5.6159 2.6117 -0.1208 10 6 6.4506 2.5748 1.0826 11 6 6.1911 2.6471 -1.3391 12 8 5.5017 2.5878 -2.3389 13 6 7.6573 2.7581 -1.4597 14 6 8.3641 3.6450 -0.6444 15 6 9.7338 3.7436 -0.7616 16 6 10.4147 2.9671 -1.6854 17 6 9.7295 2.0871 -2.4985 18 6 8.3497 1.9742 -2.3943 19 8 7.6751 1.1104 -3.1915 20 6 8.3862 0.4731 -4.1431 21 1 9.4561 0.6090 -4.1997 22 6 7.7436 -0.3571 -5.0496 23 7 6.4408 -0.5230 -4.9804 24 14 8.7290 -1.2408 -6.3678 25 1 10.1653 -0.8891 -6.2314 26 1 8.5611 -2.7079 -6.2113 27 1 8.2439 -0.8273 -7.7090 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 3.7931 -0.5820 1.2480 33 1 5.2465 0.4453 1.2476 34 1 3.7934 0.9592 2.1385 35 1 3.8679 3.0964 0.9320 36 1 3.7209 3.1493 -0.8411 37 1 6.7348 3.5902 1.3588 38 1 5.8908 2.1194 1.8994 39 1 7.3474 1.9876 0.8849 40 1 7.8380 4.2521 0.0774 41 1 10.2796 4.4264 -0.1271 42 1 11.4882 3.0510 -1.7697 43 1 10.2673 1.4856 -3.2164 44 1 5.9915 -1.1039 -5.6141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175614382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:41 Heat of formation + Delta-G solvation = -64.649828 kcal Electronic energy + Delta-G solvation = -27511.418141 eV Core-core repulsion = 23623.124510 eV Total energy + Delta-G solvation = -3888.293631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.15479 -39.50679 -38.24655 -36.37781 -35.53648 -34.60635 -33.01165 -32.36020 -30.42506 -28.97282 -27.66922 -26.97677 -25.62701 -25.33720 -23.39239 -22.14523 -21.40389 -20.10807 -18.98228 -18.06860 -17.32769 -17.11165 -16.25829 -16.11778 -15.53078 -15.29078 -14.96383 -14.71013 -14.35122 -14.25134 -13.88573 -13.64427 -13.57864 -13.42416 -12.98363 -12.70818 -12.58309 -12.52290 -12.41685 -12.24710 -12.18043 -11.80552 -11.68444 -11.36260 -11.20009 -11.08902 -10.93862 -10.82608 -10.70560 -10.45221 -9.74860 -9.58815 -9.15861 -8.97813 -8.88947 -8.25906 -8.21188 -7.33617 -6.47889 -4.07572 1.78648 2.29663 2.71811 3.09451 3.09527 3.11631 3.16761 3.55527 3.62884 3.91577 4.51899 4.77400 4.91634 4.97463 5.02466 5.13902 5.15266 5.25634 5.36101 5.40221 5.46210 5.48251 5.62450 5.63383 5.69148 5.74574 5.81659 5.89384 5.97614 6.04304 6.15485 6.19648 6.24086 6.37725 6.56771 6.65207 6.91327 6.98994 7.05291 7.23946 7.28194 7.43774 7.67847 7.86307 7.96166 8.24178 8.93075 8.96501 9.63374 10.67420 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010375 B = 0.004559 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.237542 B = 6140.413947 C = 8339.759881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.737 5.737 3 C 0.526 3.474 4 O -0.542 6.542 5 C -0.132 4.132 6 H 0.111 0.889 7 C -0.142 4.142 8 C 0.144 3.856 9 N -0.624 5.624 10 C 0.080 3.920 11 C 0.569 3.431 12 O -0.508 6.508 13 C -0.219 4.219 14 C -0.042 4.042 15 C -0.227 4.227 16 C -0.054 4.054 17 C -0.237 4.237 18 C 0.189 3.811 19 O -0.145 6.145 20 C -0.399 4.399 21 H 0.095 0.905 22 C 0.044 3.956 23 N -0.842 5.842 24 Si 0.941 3.059 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.403 0.597 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.131 0.869 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 0.057 13.664 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.389 5.389 3 C 0.313 3.687 4 O -0.419 6.419 5 C -0.154 4.154 6 H 0.129 0.871 7 C -0.200 4.200 8 C 0.020 3.980 9 N -0.359 5.359 10 C -0.064 4.064 11 C 0.359 3.641 12 O -0.382 6.382 13 C -0.224 4.224 14 C -0.060 4.060 15 C -0.246 4.246 16 C -0.072 4.072 17 C -0.256 4.256 18 C 0.131 3.869 19 O -0.045 6.045 20 C -0.475 4.475 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.474 5.474 24 Si 0.765 3.235 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.200 1.200 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.237 0.763 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.572 0.566 12.941 13.437 hybrid contribution 0.817 -0.972 -0.650 1.426 sum -2.755 -0.406 12.291 12.602 Atomic orbital electron populations 1.21507 0.79916 1.01988 1.02194 1.45824 1.07611 1.09015 1.76467 1.20640 0.89980 0.83415 0.74700 1.90681 1.70603 1.31296 1.49319 1.21760 0.91058 1.00614 1.02006 0.87119 1.21853 1.02679 0.99606 0.95823 1.21033 0.79709 0.93782 1.03453 1.47742 1.05717 1.76154 1.06312 1.21956 0.95885 1.01388 0.87130 1.18280 0.87837 0.75674 0.82308 1.90841 1.64200 1.47204 1.35930 1.18752 0.92143 1.06470 1.04986 1.20901 0.93941 0.95482 0.95712 1.20487 0.94008 1.05696 1.04374 1.20894 0.98656 0.93895 0.93782 1.21142 0.93842 1.05281 1.05358 1.19199 0.90243 0.88123 0.89310 1.84024 1.36008 1.45931 1.38522 1.21466 0.92347 1.25557 1.08136 0.88810 1.25350 0.95995 0.97058 0.97877 1.70095 1.07819 1.34389 1.35145 0.85653 0.79220 0.78855 0.79725 1.18980 1.20086 1.20011 0.92421 0.92258 0.90843 0.76327 0.92412 0.90708 0.92370 0.90452 0.89258 0.92982 0.91422 0.90703 0.86393 0.87232 0.87213 0.85104 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.70 59.85 0.64 1.49 16 2 N -0.74 -8.48 5.61 -67.07 -0.38 -8.86 16 3 C 0.53 7.85 7.15 -10.99 -0.08 7.77 16 4 O -0.54 -9.82 15.92 5.55 0.09 -9.73 16 5 C -0.13 -1.94 2.93 -91.78 -0.27 -2.21 16 6 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 7 C -0.14 -1.57 8.07 37.16 0.30 -1.27 16 8 C 0.14 2.30 4.19 -4.04 -0.02 2.28 16 9 N -0.62 -10.46 2.70 -182.81 -0.49 -10.95 16 10 C 0.08 0.99 7.89 59.85 0.47 1.46 16 11 C 0.57 12.54 7.05 -12.47 -0.09 12.45 16 12 O -0.51 -13.73 15.91 -8.74 -0.14 -13.87 16 13 C -0.22 -4.69 4.93 -104.81 -0.52 -5.21 16 14 C -0.04 -0.72 7.95 -39.19 -0.31 -1.03 16 15 C -0.23 -3.65 10.02 -39.61 -0.40 -4.04 16 16 C -0.05 -0.93 10.03 -39.54 -0.40 -1.33 16 17 C -0.24 -5.01 9.16 -39.44 -0.36 -5.37 16 18 C 0.19 4.61 6.63 -38.60 -0.26 4.35 16 19 O -0.15 -4.19 8.63 -13.21 -0.11 -4.30 16 20 C -0.40 -11.14 9.49 30.90 0.29 -10.84 16 21 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 22 C 0.04 1.21 5.49 -17.51 -0.10 1.11 16 23 N -0.84 -24.95 13.67 55.48 0.76 -24.19 16 24 Si 0.94 20.36 29.55 -169.99 -5.02 15.33 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.40 3.69 8.25 -40.82 -0.34 3.36 16 32 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 33 H 0.07 0.86 5.99 -51.93 -0.31 0.55 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 36 H 0.09 1.70 7.31 -51.93 -0.38 1.33 16 37 H 0.05 0.56 6.64 -51.93 -0.34 0.21 16 38 H 0.07 0.66 6.22 -51.93 -0.32 0.34 16 39 H 0.07 1.00 6.73 -51.93 -0.35 0.65 16 40 H 0.12 1.67 6.02 -52.49 -0.32 1.36 16 41 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.13 2.74 5.64 -52.48 -0.30 2.45 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -36.32 363.76 -6.73 -43.05 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.84 Total: 8.42 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.08 Total: -0.38 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.11 Total: -44.00 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.16 Total: -27.91 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.32 -6.73 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175614382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.599 kcal (2) G-P(sol) polarization free energy of solvation -36.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds