Wall clock time and date at job start Tue Mar 31 2020 13:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34765 * 116.99986 * 2 1 4 4 O 1.21513 * 119.99212 * 359.97438 * 3 2 1 5 5 C 1.47374 * 120.00344 * 179.97438 * 3 2 1 6 6 C 1.39751 * 120.20572 * 5.21199 * 5 3 2 7 7 C 1.37777 * 119.91582 * 180.25234 * 6 5 3 8 8 C 1.38577 * 120.33572 * 359.72556 * 7 6 5 9 9 C 1.38013 * 120.42169 * 0.02562 * 8 7 6 10 10 C 1.38848 * 120.07530 * 359.97438 * 9 8 7 11 11 N 1.39256 * 120.17188 * 180.02562 * 10 9 8 12 12 C 1.34776 * 119.99727 * 334.76761 * 11 10 9 13 13 O 1.21273 * 119.99954 * 354.46883 * 12 11 10 14 14 C 1.50700 * 119.99802 * 174.45942 * 12 11 10 15 15 N 1.46906 * 109.47158 * 180.02562 * 14 12 11 16 16 C 1.46904 * 110.99624 * 293.95749 * 15 14 12 17 17 C 1.46895 * 111.00115 * 170.00324 * 15 14 12 18 18 H 1.09003 * 109.46950 * 59.99945 * 17 15 14 19 19 C 1.53007 * 109.47203 * 300.00143 * 17 15 14 20 20 C 1.50700 * 109.47076 * 179.97438 * 17 15 14 21 21 H 1.07994 * 120.00366 * 0.02562 * 20 17 15 22 22 C 1.37884 * 119.99909 * 179.97438 * 20 17 15 23 23 N 1.31519 * 119.99698 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 119.99895 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47011 * 270.00313 * 24 22 20 26 26 H 1.48502 * 109.46875 * 30.00525 * 24 22 20 27 27 H 1.48497 * 109.46993 * 150.00421 * 24 22 20 28 28 H 1.09001 * 109.46557 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47210 * 299.99930 * 1 2 3 30 30 H 1.09003 * 109.46951 * 60.00284 * 1 2 3 31 31 H 1.07997 * 120.04026 * 359.97438 * 6 5 3 32 32 H 1.07997 * 119.83250 * 179.74341 * 7 6 5 33 33 H 1.08005 * 119.78774 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.96616 * 179.97438 * 9 8 7 35 35 H 0.97000 * 120.00235 * 154.77699 * 11 10 9 36 36 H 1.09000 * 109.47193 * 60.00485 * 14 12 11 37 37 H 1.08997 * 109.47581 * 300.00346 * 14 12 11 38 38 H 1.09001 * 109.47166 * 296.03955 * 16 15 14 39 39 H 1.08992 * 109.47157 * 56.04829 * 16 15 14 40 40 H 1.09008 * 109.46738 * 176.04867 * 16 15 14 41 41 H 1.08997 * 109.46510 * 300.00267 * 19 17 15 42 42 H 1.08993 * 109.46970 * 59.99670 * 19 17 15 43 43 H 1.09002 * 109.46895 * 179.97438 * 19 17 15 44 44 H 0.97000 * 119.99452 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4018 2.2198 -0.0005 5 6 3.5355 1.2780 0.0006 6 6 4.3007 0.1137 -0.1086 7 6 5.6762 0.1923 -0.1022 8 6 6.3065 1.4217 0.0063 9 6 5.5644 2.5808 0.1098 10 6 4.1772 2.5216 0.1051 11 7 3.4265 3.6899 0.2088 12 6 3.9527 4.7783 0.8044 13 8 5.0395 4.7115 1.3384 14 6 3.1907 6.0785 0.8067 15 7 3.9721 7.1028 1.5124 16 6 4.1059 6.7736 2.9378 17 6 3.3782 8.4344 1.3332 18 1 2.3625 8.4354 1.7288 19 6 3.3457 8.7820 -0.1565 20 6 4.2048 9.4565 2.0702 21 1 5.0837 9.1479 2.6166 22 6 3.8396 10.7858 2.0458 23 7 2.7695 11.1617 1.3799 24 14 4.8646 12.0528 2.9587 25 1 4.3552 12.1949 4.3464 26 1 6.2817 11.6104 2.9944 27 1 4.7717 13.3604 2.2611 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.8144 -0.8469 -0.1934 32 1 6.2662 -0.7087 -0.1825 33 1 7.3853 1.4731 0.0100 34 1 6.0632 3.5349 0.1944 35 1 2.5248 3.7202 -0.1475 36 1 2.2348 5.9385 1.3113 37 1 3.0158 6.3989 -0.2203 38 1 3.1220 6.7835 3.4069 39 1 4.5481 5.7829 3.0419 40 1 4.7468 7.5103 3.4223 41 1 4.3613 8.7809 -0.5520 42 1 2.7476 8.0427 -0.6891 43 1 2.9045 9.7699 -0.2895 44 1 2.5124 12.0968 1.3631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175994068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:13 Heat of formation + Delta-G solvation = -64.949440 kcal Electronic energy + Delta-G solvation = -26938.787399 eV Core-core repulsion = 23050.480776 eV Total energy + Delta-G solvation = -3888.306623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23101 -40.05536 -38.51627 -36.83525 -36.49900 -34.60992 -32.74853 -31.74509 -30.31663 -29.17573 -28.14458 -27.63083 -24.93373 -24.24271 -23.71243 -22.77107 -21.34262 -20.38966 -19.33591 -18.21109 -17.66027 -17.10591 -17.03869 -16.66088 -16.19030 -15.49331 -15.23712 -15.04532 -14.52629 -14.41543 -13.94793 -13.84592 -13.69084 -13.63248 -13.41934 -12.84390 -12.62064 -12.51903 -12.33313 -12.19458 -11.75683 -11.68629 -11.14032 -11.12632 -11.01677 -10.89402 -10.73499 -10.66369 -10.48026 -10.15667 -10.11077 -9.95293 -9.37018 -9.17693 -8.88067 -8.42578 -8.21776 -7.20431 -6.01506 -4.05264 0.45092 1.15959 2.28270 2.38549 2.77930 3.04710 3.32076 3.38449 3.43779 3.64644 4.39402 4.42015 4.63013 4.76192 4.79134 4.88262 4.91503 5.07058 5.08628 5.19874 5.25340 5.31532 5.35197 5.72189 5.74217 5.83208 5.97121 5.99458 6.05057 6.29023 6.29954 6.39386 6.45226 6.77740 6.79977 6.91176 7.00844 7.11880 7.37383 7.45316 7.51549 7.68568 7.83461 8.15334 8.28060 8.31173 8.56158 9.01198 9.59574 11.05693 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.002841 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.693015 B = 9853.145174 C =10770.973328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.518 3.482 4 O -0.515 6.515 5 C -0.183 4.183 6 C -0.040 4.040 7 C -0.165 4.165 8 C -0.056 4.056 9 C -0.151 4.151 10 C 0.235 3.765 11 N -0.672 5.672 12 C 0.514 3.486 13 O -0.494 6.494 14 C 0.033 3.967 15 N -0.519 5.519 16 C 0.033 3.967 17 C 0.212 3.788 18 H 0.000 1.000 19 C -0.136 4.136 20 C -0.502 4.502 21 H 0.065 0.935 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.282 1.282 26 H -0.273 1.273 27 H -0.287 1.287 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.424 0.576 36 H 0.056 0.944 37 H 0.109 0.891 38 H 0.006 0.994 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.007 0.993 43 H 0.088 0.912 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 -24.623 -5.202 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.366 3.634 4 O -0.405 6.405 5 C -0.187 4.187 6 C -0.058 4.058 7 C -0.184 4.184 8 C -0.075 4.075 9 C -0.171 4.171 10 C 0.136 3.864 11 N -0.323 5.323 12 C 0.303 3.697 13 O -0.367 6.367 14 C -0.098 4.098 15 N -0.244 5.244 16 C -0.115 4.115 17 C 0.106 3.894 18 H 0.018 0.982 19 C -0.194 4.194 20 C -0.540 4.540 21 H 0.084 0.916 22 C -0.143 4.143 23 N -0.534 5.534 24 Si 0.726 3.274 25 H -0.208 1.208 26 H -0.198 1.198 27 H -0.213 1.213 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.176 0.824 35 H 0.269 0.731 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.025 0.975 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.106 0.894 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.486 -24.055 -5.057 24.586 hybrid contribution -1.105 0.732 0.619 1.463 sum -1.592 -23.323 -4.439 23.795 Atomic orbital electron populations 1.23312 0.75739 1.03819 1.02904 1.86542 1.23727 1.32302 1.84336 1.21078 0.88762 0.81451 0.72140 1.90622 1.66709 1.35669 1.47465 1.18744 0.88885 0.93633 1.17446 1.21199 0.93832 0.96857 0.93939 1.21063 0.94191 0.98210 1.04900 1.21379 1.00500 0.91853 0.93724 1.21558 0.91429 1.01258 1.02885 1.17848 0.91379 0.84703 0.92512 1.44360 1.20057 1.10017 1.57882 1.21416 0.86843 0.84983 0.76435 1.90603 1.20738 1.83932 1.41410 1.22026 0.94942 0.89789 1.03077 1.61929 1.49477 1.01977 1.11004 1.22352 0.99167 1.01368 0.88639 1.19324 0.93242 0.82848 0.93944 0.98195 1.21895 0.99238 1.01793 0.96442 1.21139 1.11034 0.91248 1.30581 0.91650 1.24929 0.95279 0.98425 0.95629 1.69890 1.24867 1.16731 1.41917 0.86490 0.80728 0.80605 0.79577 1.20794 1.19772 1.21266 0.87927 0.91634 0.91634 0.84435 0.85233 0.84989 0.82350 0.73117 0.92648 0.87340 0.97500 0.92162 0.90448 0.94420 0.97416 0.89371 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.46 9.83 -40.67 -0.40 -3.86 16 3 C 0.52 6.25 7.88 34.45 0.27 6.52 16 4 O -0.51 -7.11 13.55 -19.28 -0.26 -7.37 16 5 C -0.18 -2.18 5.89 -104.83 -0.62 -2.80 16 6 C -0.04 -0.37 9.61 -39.18 -0.38 -0.75 16 7 C -0.16 -1.40 10.02 -39.62 -0.40 -1.80 16 8 C -0.06 -0.56 10.03 -39.54 -0.40 -0.95 16 9 C -0.15 -1.99 8.70 -39.44 -0.34 -2.34 16 10 C 0.24 3.25 6.43 -83.48 -0.54 2.71 16 11 N -0.67 -9.98 4.96 -9.68 -0.05 -10.03 16 12 C 0.51 8.97 7.32 -10.99 -0.08 8.88 16 13 O -0.49 -9.68 11.51 5.56 0.06 -9.61 16 14 C 0.03 0.62 5.27 -4.97 -0.03 0.59 16 15 N -0.52 -11.67 4.36 -237.72 -1.04 -12.71 16 16 C 0.03 0.71 8.88 60.07 0.53 1.24 16 17 C 0.21 5.39 2.06 -68.86 -0.14 5.25 16 18 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 19 C -0.14 -3.28 8.77 37.16 0.33 -2.96 16 20 C -0.50 -13.90 7.93 -34.44 -0.27 -14.17 16 21 H 0.07 1.83 6.39 -52.49 -0.34 1.49 16 22 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 23 N -0.89 -25.47 11.32 55.43 0.63 -24.85 16 24 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.14 0.98 7.62 -52.49 -0.40 0.58 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.16 2.40 5.81 -52.49 -0.30 2.09 16 35 H 0.42 5.97 5.82 -40.82 -0.24 5.73 16 36 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 37 H 0.11 1.91 5.83 -51.93 -0.30 1.61 16 38 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.06 1.24 5.82 -51.93 -0.30 0.94 16 40 H 0.08 1.75 6.23 -51.92 -0.32 1.43 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.01 0.15 6.20 -51.93 -0.32 -0.17 16 43 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -31.75 358.21 -7.54 -39.30 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.78 Total: 4.92 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.09 Total: 2.29 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.46 Total: -47.58 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.60 Total: -20.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.75 -7.54 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175994068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.651 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds