Wall clock time and date at job start Tue Mar 31 2020 13:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 O 1.42905 * 109.47287 * 180.02562 * 17 16 14 19 19 C 1.35706 * 117.00062 * 180.02562 * 18 17 16 20 20 C 1.38996 * 119.91421 * 359.73030 * 19 18 17 21 21 C 1.37701 * 120.08959 * 179.72183 * 20 19 18 22 22 C 1.39741 * 119.90554 * 0.56896 * 21 20 19 23 23 C 1.47606 * 120.08435 * 179.68203 * 22 21 20 24 24 N 1.34781 * 120.00085 * 0.02562 * 23 22 21 25 25 O 1.21580 * 120.00038 * 180.02562 * 23 22 21 26 26 C 1.39731 * 119.82751 * 359.70288 * 22 21 20 27 27 C 1.37700 * 119.91235 * 359.97438 * 26 22 21 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 36 36 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 37 37 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 38 38 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 39 39 H 1.07996 * 119.95434 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.04628 * 180.27385 * 21 20 19 41 41 H 0.97007 * 119.99709 * 0.02562 * 24 23 22 42 42 H 0.96997 * 120.00340 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.04354 * 179.97438 * 26 22 21 44 44 H 1.07997 * 119.96014 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 8 4.6226 -0.4578 -5.3130 19 6 5.3987 0.2592 -6.1646 20 6 5.6908 1.5887 -5.8835 21 6 6.4827 2.3180 -6.7421 22 6 6.9829 1.7231 -7.9034 23 6 7.8263 2.5033 -8.8302 24 7 8.1153 3.7910 -8.5565 25 8 8.2603 1.9843 -9.8403 26 6 6.6822 0.3880 -8.1853 27 6 5.8951 -0.3365 -7.3182 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 3.9016 -1.6021 -3.0168 36 1 2.4483 -1.0887 -3.9070 37 1 3.5409 1.0721 -4.4431 38 1 4.9938 0.5582 -3.5525 39 1 5.2996 2.0492 -4.9884 40 1 6.7129 3.3497 -6.5208 41 1 7.7693 4.2049 -7.7503 42 1 8.6692 4.3038 -9.1656 43 1 7.0666 -0.0752 -9.0820 44 1 5.6619 -1.3683 -7.5355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176300850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:27 Heat of formation + Delta-G solvation = -89.442910 kcal Electronic energy + Delta-G solvation = -25729.585183 eV Core-core repulsion = 21840.216444 eV Total energy + Delta-G solvation = -3889.368740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69041 -39.67227 -39.08417 -37.26342 -35.48005 -34.15241 -33.05892 -32.05457 -31.25853 -30.13297 -29.17676 -26.21716 -25.31723 -24.93055 -23.83562 -22.57094 -20.96044 -20.64445 -18.95479 -18.33036 -17.92600 -17.15730 -16.63282 -16.47224 -16.27585 -15.55412 -15.36031 -15.25067 -15.03818 -14.72578 -14.47613 -14.15115 -13.82109 -13.52904 -13.30203 -12.94728 -12.72726 -12.54157 -12.45167 -12.02020 -11.86849 -11.60650 -11.52151 -11.11434 -11.00947 -10.91906 -10.82834 -10.75282 -10.38242 -10.33002 -10.22570 -10.05816 -9.39891 -9.28515 -9.10411 -8.52521 -8.48777 -7.70824 -6.13454 -4.21896 0.61596 1.02602 2.58688 2.79830 3.20173 3.20652 3.23899 3.29198 3.31440 3.57347 3.96664 4.34701 4.35912 4.52978 4.60688 4.77732 4.89222 4.93400 5.07748 5.09226 5.18044 5.30255 5.41701 5.60233 5.63157 5.70796 5.78691 5.86176 5.97227 5.97891 6.01467 6.30517 6.35135 6.45064 6.68523 6.76065 6.98064 6.98836 7.12078 7.31289 7.44695 7.64485 7.93124 7.93596 8.12224 8.41482 8.73410 8.91434 9.44577 10.91806 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.002045 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.009033 B =13686.433446 C =14044.865791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.080 3.920 14 C 0.508 3.492 15 O -0.557 6.557 16 C -0.139 4.139 17 C 0.073 3.927 18 O -0.312 6.312 19 C 0.169 3.831 20 C -0.217 4.217 21 C -0.041 4.041 22 C -0.190 4.190 23 C 0.570 3.430 24 N -0.854 5.854 25 O -0.548 6.548 26 C -0.019 4.019 27 C -0.164 4.164 28 H 0.094 0.906 29 H 0.011 0.989 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.141 0.859 40 H 0.128 0.872 41 H 0.401 0.599 42 H 0.404 0.596 43 H 0.142 0.858 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 0.287 -18.061 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.063 4.063 14 C 0.295 3.705 15 O -0.437 6.437 16 C -0.180 4.180 17 C -0.002 4.002 18 O -0.224 6.224 19 C 0.122 3.878 20 C -0.236 4.236 21 C -0.060 4.060 22 C -0.194 4.194 23 C 0.357 3.643 24 N -0.418 5.418 25 O -0.426 6.426 26 C -0.038 4.038 27 C -0.183 4.183 28 H 0.112 0.888 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.231 0.769 42 H 0.235 0.765 43 H 0.160 0.840 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.246 0.319 -18.363 20.133 hybrid contribution 0.256 0.077 1.277 1.305 sum 8.503 0.396 -17.087 19.089 Atomic orbital electron populations 1.22085 0.98081 0.99471 1.00841 1.18970 0.90953 0.94531 0.79800 0.91851 1.21263 1.32055 1.13108 0.90266 0.92255 1.24903 0.94904 0.94979 0.99009 1.69868 1.36158 1.22504 1.23952 0.86536 0.79233 0.79577 0.81923 1.21142 1.20198 1.20237 1.48234 1.48549 1.11774 1.23386 1.21659 0.98992 0.83095 1.02600 1.19995 0.79528 0.87000 0.84018 1.90663 1.58787 1.17126 1.77081 1.21538 1.01050 0.99760 0.95610 1.22607 0.98534 0.95254 0.83780 1.85974 1.62665 1.40493 1.33311 1.19322 0.88879 0.90075 0.89529 1.21361 1.04838 0.94212 1.03193 1.21057 0.93745 0.99148 0.92047 1.19718 1.05897 0.95959 0.97800 1.18192 0.79363 0.81714 0.85039 1.43768 1.56142 1.13066 1.28786 1.90810 1.53722 1.70380 1.27692 1.21037 0.92839 0.92011 0.97876 1.20442 1.02463 1.01592 0.93798 0.88785 0.97014 0.95101 0.92563 0.93658 0.92585 0.89917 0.88165 0.88323 0.90719 0.90621 0.84107 0.85376 0.76945 0.76546 0.84043 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.97 37.16 0.33 -3.06 16 2 C 0.26 6.34 2.64 -69.09 -0.18 6.15 16 3 H 0.06 1.81 6.90 -51.93 -0.36 1.46 16 4 C -0.53 -13.81 7.99 -34.44 -0.28 -14.09 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.51 11.32 55.43 0.63 -23.88 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.59 -11.83 2.75 -175.26 -0.48 -12.31 16 13 C 0.08 1.25 9.24 59.85 0.55 1.80 16 14 C 0.51 9.64 7.67 -10.99 -0.08 9.55 16 15 O -0.56 -12.61 15.31 5.56 0.09 -12.53 16 16 C -0.14 -1.86 4.62 -27.89 -0.13 -1.99 16 17 C 0.07 0.93 4.02 37.15 0.15 1.08 16 18 O -0.31 -3.75 10.12 -18.82 -0.19 -3.94 16 19 C 0.17 1.88 6.70 -39.02 -0.26 1.62 16 20 C -0.22 -2.20 9.01 -39.50 -0.36 -2.55 16 21 C -0.04 -0.35 9.53 -39.22 -0.37 -0.73 16 22 C -0.19 -1.87 5.88 -104.96 -0.62 -2.48 16 23 C 0.57 5.79 8.04 -12.44 -0.10 5.69 16 24 N -0.85 -5.15 8.82 30.47 0.27 -4.88 16 25 O -0.55 -7.59 17.18 5.30 0.09 -7.50 16 26 C -0.02 -0.19 9.58 -39.22 -0.38 -0.56 16 27 C -0.16 -1.64 9.97 -39.49 -0.39 -2.03 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.69 6.44 -51.92 -0.33 0.36 16 34 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 35 H 0.10 1.20 7.40 -51.93 -0.38 0.81 16 36 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 37 H 0.07 0.95 7.60 -51.93 -0.39 0.56 16 38 H 0.08 0.99 7.62 -51.93 -0.40 0.59 16 39 H 0.14 1.38 6.28 -52.49 -0.33 1.05 16 40 H 0.13 0.68 6.39 -52.49 -0.34 0.35 16 41 H 0.40 1.40 6.85 -40.82 -0.28 1.12 16 42 H 0.40 1.90 8.93 -40.82 -0.36 1.54 16 43 H 0.14 1.32 7.64 -52.49 -0.40 0.92 16 44 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -33.24 366.43 -7.17 -40.41 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.86 Total: 3.56 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.21 Total: 0.04 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.41 Total: -41.07 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.01 Total: -23.97 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.24 -7.17 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176300850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.037 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds