Wall clock time and date at job start Tue Mar 31 2020 13:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 O 1.42905 * 109.47287 * 180.02562 * 17 16 14 19 19 C 1.35706 * 117.00062 * 180.02562 * 18 17 16 20 20 C 1.38996 * 119.91421 * 359.73030 * 19 18 17 21 21 C 1.37701 * 120.08959 * 179.72183 * 20 19 18 22 22 C 1.39741 * 119.90554 * 0.56896 * 21 20 19 23 23 C 1.47606 * 120.08435 * 179.68203 * 22 21 20 24 24 N 1.34781 * 120.00085 * 0.02562 * 23 22 21 25 25 O 1.21580 * 120.00038 * 180.02562 * 23 22 21 26 26 C 1.39731 * 119.82751 * 359.70288 * 22 21 20 27 27 C 1.37700 * 119.91235 * 359.97438 * 26 22 21 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 36 36 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 37 37 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 38 38 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 39 39 H 1.07996 * 119.95434 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.04628 * 180.27385 * 21 20 19 41 41 H 0.97007 * 119.99709 * 0.02562 * 24 23 22 42 42 H 0.96997 * 120.00340 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.04354 * 179.97438 * 26 22 21 44 44 H 1.07997 * 119.96014 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 8 4.6226 -0.4578 -5.3130 19 6 5.3987 0.2592 -6.1646 20 6 5.6908 1.5887 -5.8835 21 6 6.4827 2.3180 -6.7421 22 6 6.9829 1.7231 -7.9034 23 6 7.8263 2.5033 -8.8302 24 7 8.1153 3.7910 -8.5565 25 8 8.2603 1.9843 -9.8403 26 6 6.6822 0.3880 -8.1853 27 6 5.8951 -0.3365 -7.3182 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 3.9016 -1.6021 -3.0168 36 1 2.4483 -1.0887 -3.9070 37 1 3.5409 1.0721 -4.4431 38 1 4.9938 0.5582 -3.5525 39 1 5.2996 2.0492 -4.9884 40 1 6.7129 3.3497 -6.5208 41 1 7.7693 4.2049 -7.7503 42 1 8.6692 4.3038 -9.1656 43 1 7.0666 -0.0752 -9.0820 44 1 5.6619 -1.3683 -7.5355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176300850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:26 Heat of formation + Delta-G solvation = -112.890474 kcal Electronic energy + Delta-G solvation = -25730.601946 eV Core-core repulsion = 21840.216444 eV Total energy + Delta-G solvation = -3890.385502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.52107 -40.83708 -40.23432 -38.11939 -37.16308 -34.89140 -34.82515 -33.26106 -32.04715 -31.32323 -30.53907 -27.56821 -27.29993 -26.04047 -24.63071 -23.57356 -22.39497 -21.51512 -20.02360 -19.48555 -18.83044 -18.45876 -17.90831 -17.71785 -17.44997 -16.98768 -16.48796 -16.14478 -16.09680 -15.98253 -15.77347 -15.12910 -14.73132 -14.57105 -14.34917 -14.32137 -14.17958 -13.69481 -13.58310 -13.51242 -13.13231 -12.97380 -12.84182 -12.72754 -12.63867 -12.56957 -12.17999 -12.12215 -11.83977 -11.78640 -11.22624 -11.19574 -10.72711 -10.72357 -10.48269 -10.13807 -9.34688 -9.32557 -8.14305 -6.30562 -0.16460 0.28793 1.42576 1.44382 1.51661 1.75517 1.79174 1.80273 2.38938 2.56442 2.65568 2.81197 3.13846 3.58693 3.74315 3.78962 3.92485 3.93147 3.97389 4.14063 4.34212 4.38525 4.49753 4.59116 4.70786 4.75208 4.77583 4.80807 4.91523 4.92887 5.07040 5.07917 5.09778 5.21335 5.29854 5.48510 5.59067 5.60179 5.67572 5.87667 6.03359 6.17054 6.25342 6.40347 6.77115 6.81317 7.28133 7.30020 7.45995 8.89723 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.002045 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.009033 B =13686.433446 C =14044.865791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.011 0.989 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.286 1.286 10 H -0.263 1.263 11 H -0.277 1.277 12 N -0.599 5.599 13 C 0.076 3.924 14 C 0.500 3.500 15 O -0.604 6.604 16 C -0.123 4.123 17 C 0.080 3.920 18 O -0.313 6.313 19 C 0.150 3.850 20 C -0.226 4.226 21 C -0.033 4.033 22 C -0.197 4.197 23 C 0.567 3.433 24 N -0.832 5.832 25 O -0.591 6.591 26 C -0.027 4.027 27 C -0.164 4.164 28 H 0.066 0.934 29 H 0.020 0.980 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.141 0.859 40 H 0.161 0.839 41 H 0.415 0.585 42 H 0.413 0.587 43 H 0.144 0.856 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.625 -1.005 -18.792 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.029 0.971 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.211 1.211 10 H -0.187 1.187 11 H -0.203 1.203 12 N -0.329 5.329 13 C -0.066 4.066 14 C 0.289 3.711 15 O -0.487 6.487 16 C -0.163 4.163 17 C 0.004 3.996 18 O -0.226 6.226 19 C 0.103 3.897 20 C -0.245 4.245 21 C -0.051 4.051 22 C -0.201 4.201 23 C 0.354 3.646 24 N -0.396 5.396 25 O -0.474 6.474 26 C -0.045 4.045 27 C -0.182 4.182 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.159 0.841 40 H 0.179 0.821 41 H 0.248 0.752 42 H 0.245 0.755 43 H 0.162 0.838 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.774 -0.975 -19.101 21.043 hybrid contribution 0.125 0.556 1.446 1.554 sum 8.899 -0.419 -17.655 19.775 Atomic orbital electron populations 1.21871 0.97180 1.00108 0.99935 1.18540 0.91603 0.92323 0.81679 0.97113 1.21555 1.31906 1.13116 0.91096 0.91928 1.25740 0.95132 0.95671 1.02045 1.70015 1.37262 1.23846 1.24458 0.85525 0.78407 0.78985 0.78188 1.21105 1.18733 1.20254 1.48225 1.48804 1.13551 1.22299 1.21914 1.01580 0.80347 1.02770 1.20930 0.78465 0.86635 0.85117 1.90638 1.60226 1.19490 1.78324 1.21419 1.02290 0.99542 0.93043 1.22414 0.98094 0.95010 0.84035 1.85931 1.63111 1.40453 1.33079 1.19547 0.89544 0.90675 0.89919 1.21486 1.05262 0.94152 1.03572 1.21334 0.92438 1.00479 0.90897 1.19851 1.05954 0.96080 0.98178 1.18295 0.79131 0.82681 0.84467 1.43605 1.55063 1.11747 1.29233 1.90790 1.55592 1.71521 1.29448 1.21170 0.92935 0.92396 0.98047 1.20573 1.02072 1.02267 0.93284 0.91515 0.96055 0.93493 0.92673 0.91421 0.88752 0.91362 0.85899 0.85556 0.91221 0.91541 0.84111 0.82140 0.75229 0.75510 0.83848 0.82937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.97 71.98 0.65 -5.55 16 2 C 0.26 13.08 2.64 44.24 0.12 13.20 16 3 H 0.01 0.66 6.90 -2.39 -0.02 0.64 16 4 C -0.54 -28.34 7.99 25.60 0.20 -28.13 16 5 H 0.06 3.17 7.33 -2.91 -0.02 3.15 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -51.89 11.32 21.45 0.24 -51.65 16 8 Si 0.96 42.05 29.54 68.60 2.03 44.07 16 9 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 N -0.60 -23.60 2.75 -826.80 -2.28 -25.87 16 13 C 0.08 2.16 9.24 127.77 1.18 3.34 16 14 C 0.50 18.65 7.67 87.66 0.67 19.32 16 15 O -0.60 -28.10 15.31 -3.03 -0.05 -28.15 16 16 C -0.12 -2.98 4.62 29.85 0.14 -2.85 16 17 C 0.08 1.92 4.02 71.98 0.29 2.21 16 18 O -0.31 -6.96 10.12 -90.26 -0.91 -7.87 16 19 C 0.15 3.14 6.70 22.63 0.15 3.29 16 20 C -0.23 -4.29 9.01 22.32 0.20 -4.09 16 21 C -0.03 -0.50 9.53 22.51 0.21 -0.29 16 22 C -0.20 -3.61 5.88 -20.08 -0.12 -3.73 16 23 C 0.57 10.86 8.04 86.72 0.70 11.56 16 24 N -0.83 -8.35 8.82 -175.76 -1.55 -9.90 16 25 O -0.59 -16.22 17.18 -3.97 -0.07 -16.29 16 26 C -0.03 -0.51 9.58 22.50 0.22 -0.29 16 27 C -0.16 -3.05 9.97 22.33 0.22 -2.83 16 28 H 0.07 3.50 6.07 -2.39 -0.01 3.48 16 29 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.05 1.98 7.67 -2.39 -0.02 1.97 16 31 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.94 6.44 -2.38 -0.02 1.93 16 34 H 0.07 2.15 7.02 -2.39 -0.02 2.13 16 35 H 0.12 2.47 7.40 -2.39 -0.02 2.45 16 36 H 0.13 2.42 8.11 -2.39 -0.02 2.40 16 37 H 0.07 1.73 7.60 -2.39 -0.02 1.71 16 38 H 0.07 1.71 7.62 -2.39 -0.02 1.69 16 39 H 0.14 2.66 6.28 -2.91 -0.02 2.64 16 40 H 0.16 1.24 6.39 -2.91 -0.02 1.22 16 41 H 0.42 1.76 6.85 -92.70 -0.64 1.13 16 42 H 0.41 3.09 8.93 -92.71 -0.83 2.27 16 43 H 0.14 2.63 7.64 -2.91 -0.02 2.61 16 44 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -74.98 366.43 2.28 -72.69 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.41 Total: 16.62 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.28 Total: 6.35 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -3.58 Total: -87.42 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -1.03 Total: -52.31 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -74.98 2.28 -72.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176300850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.199 kcal (2) G-P(sol) polarization free energy of solvation -74.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds