Wall clock time and date at job start Tue Mar 31 2020 12:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 O 1.45206 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.34749 * 116.99706 * 179.97438 * 4 3 2 6 6 O 1.21504 * 120.00596 * 0.02562 * 5 4 3 7 7 C 1.47443 * 119.99806 * 179.97438 * 5 4 3 8 8 C 1.39816 * 120.07773 * 0.26157 * 7 5 4 9 9 C 1.37644 * 119.91798 * 180.23074 * 8 7 5 10 10 C 1.39150 * 120.07971 * 359.51103 * 9 8 7 11 11 N 1.39396 * 119.92071 * 180.27828 * 10 9 8 12 12 C 1.34780 * 120.00512 * 144.84351 * 11 10 9 13 13 O 1.21582 * 119.99537 * 4.54427 * 12 11 10 14 14 N 1.34773 * 120.00610 * 184.55115 * 12 11 10 15 15 C 1.46504 * 119.99915 * 359.97438 * 14 12 11 16 16 C 1.46497 * 120.00088 * 180.02562 * 14 12 11 17 17 C 1.50694 * 109.47534 * 89.99528 * 16 14 12 18 18 H 1.07999 * 120.00279 * 359.97438 * 17 16 14 19 19 C 1.37882 * 120.00043 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99753 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99926 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47237 * 89.99665 * 21 19 17 23 23 H 1.48500 * 109.46948 * 209.99604 * 21 19 17 24 24 H 1.48501 * 109.46967 * 329.99770 * 21 19 17 25 25 C 1.39156 * 120.16114 * 0.25428 * 10 9 8 26 26 C 1.37642 * 120.07363 * 359.97438 * 25 10 9 27 27 H 1.09003 * 109.46943 * 59.99717 * 1 2 3 28 28 H 1.08994 * 109.46921 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46577 * 300.00055 * 1 2 3 30 30 H 1.09002 * 109.47238 * 239.99791 * 2 1 3 31 31 H 1.09003 * 109.47406 * 120.00020 * 2 1 3 32 32 H 1.08996 * 109.46860 * 60.00089 * 3 2 1 33 33 H 1.09003 * 109.47306 * 300.00061 * 3 2 1 34 34 H 1.07995 * 120.04671 * 359.97438 * 8 7 5 35 35 H 1.08006 * 119.95936 * 179.79055 * 9 8 7 36 36 H 0.97003 * 120.00379 * 324.84621 * 11 10 9 37 37 H 1.08996 * 109.46559 * 90.00104 * 15 14 12 38 38 H 1.08994 * 109.47367 * 210.00656 * 15 14 12 39 39 H 1.09004 * 109.47278 * 330.00741 * 15 14 12 40 40 H 1.09000 * 109.47204 * 209.99699 * 16 14 12 41 41 H 1.09006 * 109.46794 * 329.99222 * 16 14 12 42 42 H 0.97007 * 119.99640 * 180.02562 * 20 19 17 43 43 H 1.07997 * 119.96267 * 180.02562 * 25 10 9 44 44 H 1.08001 * 120.03503 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4921 1.4424 0.0006 5 6 4.1039 2.6430 0.0002 6 8 3.4422 3.6621 -0.0003 7 6 5.5763 2.7202 0.0013 8 6 6.3393 1.5486 -0.0027 9 6 7.7137 1.6244 0.0032 10 6 8.3437 2.8651 0.0028 11 7 9.7358 2.9380 0.0029 12 6 10.3590 3.9260 -0.6694 13 8 9.7074 4.8005 -1.2069 14 7 11.7044 3.9446 -0.7461 15 6 12.4896 2.8911 -0.0981 16 6 12.3817 5.0188 -1.4765 17 6 12.6711 6.1606 -0.5366 18 1 12.3792 6.0931 0.5011 19 6 13.3075 7.2920 -1.0015 20 7 13.6624 7.3743 -2.2652 21 14 13.6668 8.7070 0.1638 22 1 15.0024 8.5117 0.7828 23 1 13.6534 9.9857 -0.5913 24 1 12.6301 8.7487 1.2263 25 6 7.5875 4.0333 0.0018 26 6 6.2128 3.9650 0.0007 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 5.8511 0.5853 -0.0061 35 1 8.3038 0.7198 0.0036 36 1 10.2561 2.2777 0.4869 37 1 12.6430 2.0698 -0.7980 38 1 13.4555 3.2935 0.2073 39 1 11.9545 2.5262 0.7786 40 1 13.3174 4.6429 -1.8904 41 1 11.7407 5.3680 -2.2860 42 1 14.1105 8.1702 -2.5922 43 1 8.0798 4.9945 0.0011 44 1 5.6265 4.8720 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176550551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:51 Heat of formation + Delta-G solvation = -85.601556 kcal Electronic energy + Delta-G solvation = -25757.645973 eV Core-core repulsion = 21868.443807 eV Total energy + Delta-G solvation = -3889.202166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74407 -40.17570 -38.38693 -36.78138 -35.13354 -34.54199 -34.15976 -32.61268 -31.02558 -30.09289 -27.83755 -27.06332 -25.93992 -24.14614 -22.96897 -22.57712 -21.89923 -20.91471 -19.61563 -18.24284 -17.72030 -17.21091 -16.83378 -16.82462 -16.57072 -15.25283 -15.02511 -14.99544 -14.86567 -14.43586 -14.18543 -13.91297 -13.50701 -13.40855 -13.15043 -12.98592 -12.89692 -12.68887 -12.43689 -12.33782 -12.21000 -11.96216 -11.56031 -11.53137 -11.25885 -11.23413 -10.95764 -10.72674 -10.63418 -10.58998 -10.26260 -10.16138 -9.71596 -9.40216 -8.97523 -8.47733 -8.18527 -7.71726 -6.08569 -4.13731 0.68493 1.40431 2.48032 2.48937 3.03088 3.27768 3.35124 3.39482 3.59467 3.93277 4.30282 4.39891 4.45497 4.49707 4.61137 4.79908 4.89126 4.92278 5.04445 5.17840 5.21509 5.25634 5.28295 5.37715 5.44088 5.52836 5.58921 5.64305 5.74631 5.76127 5.96515 6.02617 6.08591 6.24996 6.31327 6.38956 6.59287 6.70421 7.05377 7.25928 7.39850 7.55154 7.68081 7.88165 8.16837 8.42867 8.85994 9.08888 9.51699 10.99301 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026536 B = 0.002186 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.926066 B =12805.174728 C =13491.041772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.066 3.934 4 O -0.356 6.356 5 C 0.515 3.485 6 O -0.513 6.513 7 C -0.164 4.164 8 C -0.040 4.040 9 C -0.174 4.174 10 C 0.222 3.778 11 N -0.695 5.695 12 C 0.696 3.304 13 O -0.563 6.563 14 N -0.609 5.609 15 C 0.082 3.918 16 C 0.259 3.741 17 C -0.530 4.530 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.137 4.137 26 C -0.030 4.030 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.405 0.595 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.156 0.844 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.222 -18.462 6.409 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.008 4.008 4 O -0.274 6.274 5 C 0.361 3.639 6 O -0.402 6.402 7 C -0.167 4.167 8 C -0.058 4.058 9 C -0.195 4.195 10 C 0.123 3.877 11 N -0.343 5.343 12 C 0.397 3.603 13 O -0.438 6.438 14 N -0.344 5.344 15 C -0.062 4.062 16 C 0.140 3.860 17 C -0.568 4.568 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.157 4.157 26 C -0.049 4.049 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.242 0.758 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.173 0.827 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.669 -17.361 5.819 25.445 hybrid contribution 0.518 0.531 0.848 1.127 sum -17.150 -16.830 6.667 24.937 Atomic orbital electron populations 1.21692 0.94189 1.02517 1.02379 1.21518 0.96108 0.94755 1.03777 1.23117 0.76424 0.98516 1.02715 1.86525 1.23223 1.33070 1.84536 1.21168 0.89158 0.81147 0.72439 1.90831 1.66894 1.36026 1.46486 1.18965 0.88523 0.95109 1.14063 1.21104 0.92878 0.97693 0.94171 1.20829 0.94638 0.96224 1.07800 1.17892 0.82640 0.93744 0.93376 1.43021 1.04529 1.32523 1.54268 1.15943 0.82915 0.81562 0.79837 1.90907 1.64127 1.37812 1.50999 1.47539 1.02801 1.28506 1.55557 1.21623 0.97736 0.90847 0.95981 1.19296 0.91941 0.82867 0.91943 1.21433 1.38206 1.01026 0.96181 0.92431 1.24932 0.95566 0.98301 0.95252 1.69930 1.40401 1.29101 1.13786 0.86483 0.78465 0.81622 0.80762 1.20648 1.21045 1.19898 1.21469 0.92774 0.99686 1.01781 1.21158 0.94081 0.96541 0.93133 0.92282 0.91666 0.92304 0.90709 0.90742 0.91224 0.91186 0.84488 0.85027 0.75766 0.93454 0.90086 0.93138 0.94625 0.93545 0.92639 0.82661 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.77 6.31 -26.73 -0.17 -0.94 16 3 C 0.07 0.59 5.48 37.16 0.20 0.79 16 4 O -0.36 -3.99 9.46 -40.63 -0.38 -4.38 16 5 C 0.51 6.95 7.89 34.48 0.27 7.22 16 6 O -0.51 -8.15 16.13 -19.27 -0.31 -8.46 16 7 C -0.16 -2.18 5.87 -104.97 -0.62 -2.79 16 8 C -0.04 -0.44 9.60 -39.21 -0.38 -0.82 16 9 C -0.17 -1.97 9.94 -39.46 -0.39 -2.36 16 10 C 0.22 3.23 6.30 -83.74 -0.53 2.70 16 11 N -0.69 -10.41 5.19 -14.22 -0.07 -10.49 16 12 C 0.70 14.10 8.11 -86.92 -0.71 13.40 16 13 O -0.56 -13.77 13.33 5.29 0.07 -13.70 16 14 N -0.61 -12.35 2.86 -188.75 -0.54 -12.89 16 15 C 0.08 1.18 10.24 59.85 0.61 1.80 16 16 C 0.26 6.56 5.16 -5.20 -0.03 6.54 16 17 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 18 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 21 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.14 -2.20 8.66 -39.46 -0.34 -2.54 16 26 C -0.03 -0.44 9.58 -39.21 -0.38 -0.81 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.14 1.19 7.60 -52.49 -0.40 0.79 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 36 H 0.40 4.59 6.51 -40.82 -0.27 4.32 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.05 0.56 6.30 -51.93 -0.33 0.23 16 40 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.16 2.92 6.21 -52.49 -0.33 2.60 16 44 H 0.14 1.95 7.64 -52.49 -0.40 1.55 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -34.00 376.16 -8.64 -42.64 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.29 Total: 1.95 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -2.50 Total: 8.48 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.12 Total: -48.77 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.62 Total: -26.54 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.00 -8.64 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176550551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.961 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds