Wall clock time and date at job start Tue Mar 31 2020 12:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 O 1.45206 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.34749 * 116.99706 * 179.97438 * 4 3 2 6 6 O 1.21504 * 120.00596 * 0.02562 * 5 4 3 7 7 C 1.47443 * 119.99806 * 179.97438 * 5 4 3 8 8 C 1.39816 * 120.07773 * 0.26157 * 7 5 4 9 9 C 1.37644 * 119.91798 * 180.23074 * 8 7 5 10 10 C 1.39150 * 120.07971 * 359.51103 * 9 8 7 11 11 N 1.39396 * 119.92071 * 180.27828 * 10 9 8 12 12 C 1.34780 * 120.00512 * 144.84351 * 11 10 9 13 13 O 1.21582 * 119.99537 * 4.54427 * 12 11 10 14 14 N 1.34773 * 120.00610 * 184.55115 * 12 11 10 15 15 C 1.46504 * 119.99915 * 359.97438 * 14 12 11 16 16 C 1.46497 * 120.00088 * 180.02562 * 14 12 11 17 17 C 1.50694 * 109.47534 * 89.99528 * 16 14 12 18 18 H 1.07999 * 120.00279 * 359.97438 * 17 16 14 19 19 C 1.37882 * 120.00043 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99753 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99926 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47237 * 89.99665 * 21 19 17 23 23 H 1.48500 * 109.46948 * 209.99604 * 21 19 17 24 24 H 1.48501 * 109.46967 * 329.99770 * 21 19 17 25 25 C 1.39156 * 120.16114 * 0.25428 * 10 9 8 26 26 C 1.37642 * 120.07363 * 359.97438 * 25 10 9 27 27 H 1.09003 * 109.46943 * 59.99717 * 1 2 3 28 28 H 1.08994 * 109.46921 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46577 * 300.00055 * 1 2 3 30 30 H 1.09002 * 109.47238 * 239.99791 * 2 1 3 31 31 H 1.09003 * 109.47406 * 120.00020 * 2 1 3 32 32 H 1.08996 * 109.46860 * 60.00089 * 3 2 1 33 33 H 1.09003 * 109.47306 * 300.00061 * 3 2 1 34 34 H 1.07995 * 120.04671 * 359.97438 * 8 7 5 35 35 H 1.08006 * 119.95936 * 179.79055 * 9 8 7 36 36 H 0.97003 * 120.00379 * 324.84621 * 11 10 9 37 37 H 1.08996 * 109.46559 * 90.00104 * 15 14 12 38 38 H 1.08994 * 109.47367 * 210.00656 * 15 14 12 39 39 H 1.09004 * 109.47278 * 330.00741 * 15 14 12 40 40 H 1.09000 * 109.47204 * 209.99699 * 16 14 12 41 41 H 1.09006 * 109.46794 * 329.99222 * 16 14 12 42 42 H 0.97007 * 119.99640 * 180.02562 * 20 19 17 43 43 H 1.07997 * 119.96267 * 180.02562 * 25 10 9 44 44 H 1.08001 * 120.03503 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4921 1.4424 0.0006 5 6 4.1039 2.6430 0.0002 6 8 3.4422 3.6621 -0.0003 7 6 5.5763 2.7202 0.0013 8 6 6.3393 1.5486 -0.0027 9 6 7.7137 1.6244 0.0032 10 6 8.3437 2.8651 0.0028 11 7 9.7358 2.9380 0.0029 12 6 10.3590 3.9260 -0.6694 13 8 9.7074 4.8005 -1.2069 14 7 11.7044 3.9446 -0.7461 15 6 12.4896 2.8911 -0.0981 16 6 12.3817 5.0188 -1.4765 17 6 12.6711 6.1606 -0.5366 18 1 12.3792 6.0931 0.5011 19 6 13.3075 7.2920 -1.0015 20 7 13.6624 7.3743 -2.2652 21 14 13.6668 8.7070 0.1638 22 1 15.0024 8.5117 0.7828 23 1 13.6534 9.9857 -0.5913 24 1 12.6301 8.7487 1.2263 25 6 7.5875 4.0333 0.0018 26 6 6.2128 3.9650 0.0007 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 5.8511 0.5853 -0.0061 35 1 8.3038 0.7198 0.0036 36 1 10.2561 2.2777 0.4869 37 1 12.6430 2.0698 -0.7980 38 1 13.4555 3.2935 0.2073 39 1 11.9545 2.5262 0.7786 40 1 13.3174 4.6429 -1.8904 41 1 11.7407 5.3680 -2.2860 42 1 14.1105 8.1702 -2.5922 43 1 8.0798 4.9945 0.0011 44 1 5.6265 4.8720 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176550551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:50 Heat of formation + Delta-G solvation = -105.996023 kcal Electronic energy + Delta-G solvation = -25758.530344 eV Core-core repulsion = 21868.443807 eV Total energy + Delta-G solvation = -3890.086537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92124 -41.41410 -39.60081 -37.77311 -36.75147 -35.95462 -34.78599 -34.61230 -32.08522 -31.32661 -29.59986 -27.81861 -27.33263 -25.60795 -24.25518 -23.93802 -22.46494 -21.99712 -21.05431 -19.48194 -18.91115 -18.63626 -18.43885 -17.95951 -17.68016 -16.85646 -16.65317 -16.04099 -15.79432 -15.73156 -15.47649 -14.94883 -14.87821 -14.61110 -14.35011 -14.05124 -13.87309 -13.80013 -13.57424 -13.46702 -13.45458 -13.12509 -13.04182 -12.82691 -12.52566 -12.37145 -12.20034 -12.13279 -12.06418 -11.74796 -11.66351 -11.51996 -11.43875 -10.99683 -10.63607 -10.04693 -9.62763 -9.15732 -8.22126 -6.36673 -0.41287 0.36648 1.35635 1.37531 1.39898 1.49451 1.55636 1.67817 2.13608 2.38603 2.78278 3.00148 3.08188 3.59755 3.82286 3.93218 3.94092 3.95514 4.22108 4.28092 4.29904 4.32071 4.52122 4.53389 4.57458 4.66742 4.76935 4.81921 4.94793 4.98614 5.06429 5.12895 5.18727 5.19130 5.22957 5.26962 5.30649 5.42051 5.46577 5.53980 5.76465 5.88964 6.02933 6.05320 6.65902 6.72005 6.99104 7.30083 7.56465 8.84258 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026536 B = 0.002186 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.926066 B =12805.174728 C =13491.041772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.058 3.942 4 O -0.348 6.348 5 C 0.518 3.482 6 O -0.545 6.545 7 C -0.168 4.168 8 C -0.023 4.023 9 C -0.149 4.149 10 C 0.202 3.798 11 N -0.672 5.672 12 C 0.691 3.309 13 O -0.616 6.616 14 N -0.617 5.617 15 C 0.076 3.924 16 C 0.274 3.726 17 C -0.543 4.543 18 H 0.053 0.947 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.966 3.034 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.276 1.276 25 C -0.159 4.159 26 C -0.040 4.040 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.174 0.826 35 H 0.176 0.824 36 H 0.425 0.575 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.032 0.968 41 H 0.000 1.000 42 H 0.267 0.733 43 H 0.117 0.883 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.614 -21.769 8.004 29.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.015 4.015 4 O -0.264 6.264 5 C 0.365 3.635 6 O -0.437 6.437 7 C -0.170 4.170 8 C -0.042 4.042 9 C -0.169 4.169 10 C 0.105 3.895 11 N -0.322 5.322 12 C 0.393 3.607 13 O -0.496 6.496 14 N -0.351 5.351 15 C -0.066 4.066 16 C 0.153 3.847 17 C -0.582 4.582 18 H 0.071 0.929 19 C -0.190 4.190 20 N -0.566 5.566 21 Si 0.791 3.209 22 H -0.187 1.187 23 H -0.208 1.208 24 H -0.201 1.201 25 C -0.179 4.179 26 C -0.059 4.059 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.267 0.733 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.019 0.981 42 H 0.076 0.924 43 H 0.135 0.865 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.058 -20.765 7.465 28.513 hybrid contribution 0.515 1.464 0.344 1.589 sum -17.543 -19.302 7.808 27.226 Atomic orbital electron populations 1.21706 0.93147 1.03411 1.02434 1.21526 0.96850 0.92674 1.04369 1.23417 0.75004 1.00569 1.02518 1.86511 1.24610 1.31472 1.83856 1.21213 0.89215 0.81377 0.71696 1.90820 1.67568 1.37249 1.48024 1.19072 0.88802 0.95320 1.13824 1.21501 0.92703 0.98148 0.91836 1.21193 0.94859 0.96006 1.04877 1.18109 0.82127 0.94547 0.94729 1.42575 1.04830 1.31415 1.53406 1.16129 0.82747 0.81965 0.79854 1.90882 1.65313 1.40182 1.53224 1.47379 1.03344 1.28721 1.55669 1.21951 0.97168 0.89741 0.97770 1.18730 0.90926 0.84099 0.90961 1.21714 1.38061 1.02178 0.96238 0.92905 1.25816 0.95374 1.00971 0.96862 1.70043 1.41099 1.29976 1.15475 0.85442 0.78860 0.78139 0.78503 1.18688 1.20800 1.20061 1.21201 0.93535 0.99129 1.04079 1.21042 0.93489 0.97326 0.94067 0.92364 0.90325 0.92208 0.90216 0.90002 0.91364 0.91621 0.80839 0.80655 0.73305 0.90603 0.90767 0.89285 0.95009 0.98149 0.92406 0.86505 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 71.98 0.71 -0.41 16 2 C -0.12 -1.17 6.31 30.59 0.19 -0.97 16 3 C 0.06 0.95 5.48 71.98 0.39 1.34 16 4 O -0.35 -7.07 9.46 -56.60 -0.54 -7.61 16 5 C 0.52 13.54 7.89 70.25 0.55 14.09 16 6 O -0.54 -17.55 16.13 19.82 0.32 -17.24 16 7 C -0.17 -4.26 5.87 -20.09 -0.12 -4.38 16 8 C -0.02 -0.43 9.60 22.51 0.22 -0.22 16 9 C -0.15 -2.77 9.94 22.35 0.22 -2.55 16 10 C 0.20 5.64 6.30 38.38 0.24 5.88 16 11 N -0.67 -19.15 5.19 -317.17 -1.65 -20.80 16 12 C 0.69 28.50 8.11 179.05 1.45 29.96 16 13 O -0.62 -32.01 13.33 -3.98 -0.05 -32.06 16 14 N -0.62 -25.17 2.86 -869.33 -2.48 -27.66 16 15 C 0.08 2.01 10.24 127.77 1.31 3.32 16 16 C 0.27 14.49 5.16 85.63 0.44 14.93 16 17 C -0.54 -30.91 9.39 25.60 0.24 -30.67 16 18 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 19 C 0.01 0.51 5.46 84.66 0.46 0.98 16 20 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 21 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.16 -5.36 8.66 22.35 0.19 -5.16 16 26 C -0.04 -1.22 9.58 22.51 0.22 -1.00 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.17 2.03 7.60 -2.91 -0.02 2.01 16 35 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.43 8.18 6.51 -92.71 -0.60 7.58 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 39 H 0.09 1.65 6.30 -2.39 -0.02 1.64 16 40 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 41 H 0.00 0.02 7.42 -2.38 -0.02 0.00 16 42 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 43 H 0.12 4.86 6.21 -2.91 -0.02 4.84 16 44 H 0.13 3.97 7.64 -2.91 -0.02 3.95 16 Total: -1.00 -79.32 376.16 5.06 -74.26 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.41 Total: 14.36 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 6.73 Total: 25.13 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -3.84 Total: -103.74 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -0.27 Total: -56.90 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -79.32 5.06 -74.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176550551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.733 kcal (2) G-P(sol) polarization free energy of solvation -79.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds