Wall clock time and date at job start Tue Mar 31 2020 13:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34232 * 117.00100 * 2 1 4 4 O 1.20826 * 119.99606 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00647 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46522 * 60.00238 * 5 3 2 7 7 C 1.52998 * 109.47221 * 300.00604 * 5 3 2 8 8 C 1.52995 * 109.47390 * 179.97438 * 5 3 2 9 9 C 1.50698 * 109.47015 * 185.00257 * 8 5 3 10 10 C 1.38288 * 119.92407 * 90.00356 * 9 8 5 11 11 C 1.38111 * 120.07382 * 179.69843 * 10 9 8 12 12 C 1.38906 * 119.92343 * 0.28047 * 11 10 9 13 13 N 1.39676 * 120.07135 * 180.02562 * 12 11 10 14 14 C 1.46500 * 119.99636 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46869 * 179.97438 * 14 13 12 16 16 O 1.21291 * 120.00128 * 0.02562 * 15 14 13 17 17 N 1.34784 * 120.00072 * 179.97438 * 15 14 13 18 18 C 1.37090 * 119.99924 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00511 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00003 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99955 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00132 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47022 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46821 * 120.00109 * 22 20 18 25 25 H 1.48500 * 109.46927 * 240.00236 * 22 20 18 26 26 C 1.38908 * 119.85606 * 359.97438 * 12 11 10 27 27 C 1.38112 * 119.92096 * 0.02562 * 26 12 11 28 28 H 1.08998 * 109.47530 * 60.00407 * 1 2 3 29 29 H 1.09006 * 109.46829 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47569 * 299.99957 * 1 2 3 31 31 H 1.09002 * 109.47096 * 59.99582 * 7 5 3 32 32 H 1.09007 * 109.46922 * 179.97438 * 7 5 3 33 33 H 1.08999 * 109.46676 * 299.99555 * 7 5 3 34 34 H 1.09001 * 109.47106 * 65.00756 * 8 5 3 35 35 H 1.09003 * 109.47500 * 305.00323 * 8 5 3 36 36 H 1.08002 * 119.96530 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.03725 * 180.29787 * 11 10 9 38 38 H 0.96995 * 120.00298 * 359.97438 * 13 12 11 39 39 H 1.09004 * 109.47369 * 299.99458 * 14 13 12 40 40 H 1.08999 * 109.47278 * 60.00072 * 14 13 12 41 41 H 0.97001 * 119.99372 * 359.97438 * 17 15 14 42 42 H 0.97000 * 120.00214 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.04221 * 179.97438 * 26 12 11 44 44 H 1.08002 * 119.96339 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9562 0.7808 -0.8892 7 6 4.1129 0.5816 1.2501 8 6 3.9999 2.7422 -0.0002 9 6 5.4997 2.8226 -0.1235 10 6 6.0865 2.8883 -1.3740 11 6 7.4604 2.9683 -1.4904 12 6 8.2531 2.9769 -0.3498 13 7 9.6429 3.0582 -0.4639 14 6 10.4773 3.0677 0.7401 15 6 11.9286 3.1606 0.3447 16 8 12.2356 3.2141 -0.8275 17 7 12.8854 3.1852 1.2937 18 6 14.2055 3.2702 0.9340 19 1 14.4789 3.3179 -0.1098 20 6 15.1919 3.2962 1.9123 21 7 14.8593 3.2397 3.1824 22 14 16.9907 3.4127 1.4223 23 1 17.0981 3.4646 -0.0579 24 1 17.5836 4.6435 2.0045 25 1 17.7203 2.2234 1.9307 26 6 7.6608 2.9054 0.9046 27 6 6.2863 2.8256 1.0138 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.8038 -0.4637 1.2501 32 1 5.2014 0.6384 1.2502 33 1 3.7228 1.0759 2.1398 34 1 3.6862 3.2143 0.9308 35 1 3.5380 3.2573 -0.8425 36 1 5.4696 2.8815 -2.2604 37 1 7.9178 3.0245 -2.4671 38 1 10.0554 3.1085 -1.3404 39 1 10.2133 3.9256 1.3585 40 1 10.3127 2.1492 1.3035 41 1 12.6398 3.1435 2.2312 42 1 15.5479 3.2574 3.8654 43 1 8.2743 2.9114 1.7934 44 1 5.8250 2.7704 1.9888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184363953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:32 Heat of formation + Delta-G solvation = -110.320173 kcal Electronic energy + Delta-G solvation = -25325.333478 eV Core-core repulsion = 21435.059432 eV Total energy + Delta-G solvation = -3890.274046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90651 -39.56091 -38.38842 -37.01889 -35.97900 -34.36899 -33.79472 -31.43403 -30.83102 -30.23432 -28.14315 -27.49217 -25.94449 -24.56688 -23.56549 -22.53398 -21.08095 -20.12539 -19.41191 -18.10388 -17.92797 -17.39608 -17.06729 -16.62529 -15.90805 -15.46048 -15.06720 -14.82194 -14.77051 -14.50542 -14.26085 -14.03376 -13.66574 -13.51667 -13.30127 -13.22309 -13.07967 -12.84134 -12.52223 -12.26247 -12.21059 -12.00786 -11.65717 -11.44170 -11.35043 -11.26850 -11.16698 -11.13451 -10.73300 -10.57503 -10.43287 -10.34642 -9.77384 -9.65862 -8.79900 -8.65499 -8.13442 -7.13152 -6.54933 -3.96707 1.56480 1.66559 1.91207 2.43719 3.08039 3.20444 3.27028 3.65045 3.70358 3.95865 4.10808 4.35139 4.58907 4.68307 4.73631 4.81238 4.83544 4.97153 5.00820 5.07901 5.13301 5.15574 5.19660 5.38454 5.51995 5.54318 5.58956 5.65120 5.79463 5.86725 5.86775 5.91414 5.95138 6.07577 6.10620 6.15784 6.48213 6.53704 6.78597 7.00117 7.43316 7.43977 7.54051 7.90404 8.08085 8.42439 9.02115 9.35959 9.84281 10.62092 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037646 B = 0.001796 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.583401 B =15584.047862 C =15948.679029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.508 6.508 5 C -0.078 4.078 6 H 0.110 0.890 7 C -0.147 4.147 8 C -0.052 4.052 9 C -0.160 4.160 10 C -0.063 4.063 11 C -0.199 4.199 12 C 0.230 3.770 13 N -0.724 5.724 14 C 0.113 3.887 15 C 0.429 3.571 16 O -0.595 6.595 17 N -0.551 5.551 18 C -0.305 4.305 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.896 5.896 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.204 4.204 27 C -0.061 4.061 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.411 0.589 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.395 0.605 42 H 0.274 0.726 43 H 0.122 0.878 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.717 -5.579 -2.264 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.395 6.395 5 C -0.097 4.097 6 H 0.128 0.872 7 C -0.204 4.204 8 C -0.089 4.089 9 C -0.162 4.162 10 C -0.082 4.082 11 C -0.222 4.222 12 C 0.123 3.877 13 N -0.354 5.354 14 C -0.016 4.016 15 C 0.214 3.786 16 O -0.481 6.481 17 N -0.186 5.186 18 C -0.434 4.434 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.536 5.536 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.227 4.227 27 C -0.079 4.079 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.249 0.751 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.229 0.771 42 H 0.083 0.917 43 H 0.140 0.860 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -24.453 -5.243 -2.680 25.152 hybrid contribution 0.743 0.105 0.157 0.766 sum -23.710 -5.138 -2.523 24.392 Atomic orbital electron populations 1.23261 0.76540 1.03657 1.02515 1.86526 1.23279 1.33703 1.84052 1.24045 0.92292 0.81174 0.71787 1.90665 1.67292 1.36381 1.45212 1.21134 0.86047 0.99739 1.02743 0.87193 1.21859 1.02938 1.00408 0.95207 1.20291 0.92143 0.92720 1.03791 1.19302 0.94088 1.09482 0.93326 1.20671 0.93783 0.97211 0.96535 1.20553 0.93580 1.11049 0.97033 1.17919 0.83583 0.92243 0.93914 1.44567 1.01900 1.79682 1.09260 1.20940 0.90586 1.01892 0.88153 1.19756 0.86522 0.85508 0.86785 1.90505 1.82433 1.56980 1.18180 1.41805 1.05935 1.62665 1.08181 1.19783 0.80722 1.47836 0.95077 0.87668 1.25316 1.00854 0.96805 0.94728 1.69614 1.34918 1.49492 0.99568 0.85757 0.81442 0.77856 0.79045 1.19138 1.20598 1.20592 1.20676 0.95086 1.11036 0.95863 1.20727 0.92759 0.96836 0.97627 0.91948 0.88129 0.91930 0.91517 0.89979 0.92209 0.90651 0.90578 0.86566 0.86301 0.75074 0.90669 0.90664 0.77141 0.91651 0.86027 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.55 101.05 1.07 1.27 16 2 O -0.36 -3.15 10.47 -39.26 -0.41 -3.56 16 3 C 0.46 4.55 7.26 36.00 0.26 4.82 16 4 O -0.51 -6.28 15.67 -18.75 -0.29 -6.57 16 5 C -0.08 -0.65 2.81 -91.78 -0.26 -0.90 16 6 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.15 -1.10 8.68 37.16 0.32 -0.78 16 8 C -0.05 -0.48 4.19 -27.89 -0.12 -0.60 16 9 C -0.16 -1.69 4.72 -104.59 -0.49 -2.18 16 10 C -0.06 -0.70 9.69 -39.61 -0.38 -1.08 16 11 C -0.20 -2.55 9.90 -39.38 -0.39 -2.94 16 12 C 0.23 3.28 6.65 -83.79 -0.56 2.72 16 13 N -0.72 -11.79 5.70 -59.81 -0.34 -12.13 16 14 C 0.11 1.92 5.39 -5.19 -0.03 1.89 16 15 C 0.43 9.69 7.85 -10.98 -0.09 9.60 16 16 O -0.59 -15.40 15.24 5.55 0.08 -15.32 16 17 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 18 C -0.30 -8.23 9.68 -14.94 -0.14 -8.37 16 19 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -23.54 13.05 55.50 0.72 -22.81 16 22 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 C -0.20 -2.62 9.31 -39.38 -0.37 -2.98 16 27 C -0.06 -0.67 7.93 -39.61 -0.31 -0.98 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.08 0.65 6.26 -51.93 -0.32 0.33 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.08 0.73 7.90 -51.93 -0.41 0.32 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.41 7.16 7.45 -40.82 -0.30 6.85 16 39 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 40 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 41 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 42 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 43 H 0.12 1.48 6.73 -52.49 -0.35 1.13 16 44 H 0.12 1.06 8.02 -52.49 -0.42 0.64 16 LS Contribution 375.05 15.07 5.65 5.65 Total: -1.00 -31.17 375.05 -7.52 -38.70 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -6.27 Total: 14.09 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.59 Total: 0.04 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.33 Total: -48.40 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.62 Total: -25.45 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.17 -7.52 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184363953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.623 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds