Wall clock time and date at job start Tue Mar 31 2020 13:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34232 * 117.00100 * 2 1 4 4 O 1.20826 * 119.99606 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00647 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46522 * 60.00238 * 5 3 2 7 7 C 1.52998 * 109.47221 * 300.00604 * 5 3 2 8 8 C 1.52995 * 109.47390 * 179.97438 * 5 3 2 9 9 C 1.50698 * 109.47015 * 185.00257 * 8 5 3 10 10 C 1.38288 * 119.92407 * 90.00356 * 9 8 5 11 11 C 1.38111 * 120.07382 * 179.69843 * 10 9 8 12 12 C 1.38906 * 119.92343 * 0.28047 * 11 10 9 13 13 N 1.39676 * 120.07135 * 180.02562 * 12 11 10 14 14 C 1.46500 * 119.99636 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46869 * 179.97438 * 14 13 12 16 16 O 1.21291 * 120.00128 * 0.02562 * 15 14 13 17 17 N 1.34784 * 120.00072 * 179.97438 * 15 14 13 18 18 C 1.37090 * 119.99924 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00511 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00003 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99955 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00132 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47022 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46821 * 120.00109 * 22 20 18 25 25 H 1.48500 * 109.46927 * 240.00236 * 22 20 18 26 26 C 1.38908 * 119.85606 * 359.97438 * 12 11 10 27 27 C 1.38112 * 119.92096 * 0.02562 * 26 12 11 28 28 H 1.08998 * 109.47530 * 60.00407 * 1 2 3 29 29 H 1.09006 * 109.46829 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47569 * 299.99957 * 1 2 3 31 31 H 1.09002 * 109.47096 * 59.99582 * 7 5 3 32 32 H 1.09007 * 109.46922 * 179.97438 * 7 5 3 33 33 H 1.08999 * 109.46676 * 299.99555 * 7 5 3 34 34 H 1.09001 * 109.47106 * 65.00756 * 8 5 3 35 35 H 1.09003 * 109.47500 * 305.00323 * 8 5 3 36 36 H 1.08002 * 119.96530 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.03725 * 180.29787 * 11 10 9 38 38 H 0.96995 * 120.00298 * 359.97438 * 13 12 11 39 39 H 1.09004 * 109.47369 * 299.99458 * 14 13 12 40 40 H 1.08999 * 109.47278 * 60.00072 * 14 13 12 41 41 H 0.97001 * 119.99372 * 359.97438 * 17 15 14 42 42 H 0.97000 * 120.00214 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.04221 * 179.97438 * 26 12 11 44 44 H 1.08002 * 119.96339 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9562 0.7808 -0.8892 7 6 4.1129 0.5816 1.2501 8 6 3.9999 2.7422 -0.0002 9 6 5.4997 2.8226 -0.1235 10 6 6.0865 2.8883 -1.3740 11 6 7.4604 2.9683 -1.4904 12 6 8.2531 2.9769 -0.3498 13 7 9.6429 3.0582 -0.4639 14 6 10.4773 3.0677 0.7401 15 6 11.9286 3.1606 0.3447 16 8 12.2356 3.2141 -0.8275 17 7 12.8854 3.1852 1.2937 18 6 14.2055 3.2702 0.9340 19 1 14.4789 3.3179 -0.1098 20 6 15.1919 3.2962 1.9123 21 7 14.8593 3.2397 3.1824 22 14 16.9907 3.4127 1.4223 23 1 17.0981 3.4646 -0.0579 24 1 17.5836 4.6435 2.0045 25 1 17.7203 2.2234 1.9307 26 6 7.6608 2.9054 0.9046 27 6 6.2863 2.8256 1.0138 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.8038 -0.4637 1.2501 32 1 5.2014 0.6384 1.2502 33 1 3.7228 1.0759 2.1398 34 1 3.6862 3.2143 0.9308 35 1 3.5380 3.2573 -0.8425 36 1 5.4696 2.8815 -2.2604 37 1 7.9178 3.0245 -2.4671 38 1 10.0554 3.1085 -1.3404 39 1 10.2133 3.9256 1.3585 40 1 10.3127 2.1492 1.3035 41 1 12.6398 3.1435 2.2312 42 1 15.5479 3.2574 3.8654 43 1 8.2743 2.9114 1.7934 44 1 5.8250 2.7704 1.9888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184363953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:31 Heat of formation + Delta-G solvation = -129.139138 kcal Electronic energy + Delta-G solvation = -25326.149530 eV Core-core repulsion = 21435.059432 eV Total energy + Delta-G solvation = -3891.090097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64453 -40.68886 -39.98524 -37.79103 -36.99597 -36.06372 -34.97926 -33.37790 -31.77249 -31.22794 -28.98702 -28.44287 -27.04945 -26.09456 -24.40762 -23.55180 -21.99965 -21.20876 -20.79863 -20.01280 -18.71483 -18.63631 -17.76596 -17.30973 -17.13608 -17.08270 -16.33838 -16.30960 -16.00136 -15.73313 -15.33123 -14.98695 -14.80479 -14.45907 -14.37414 -14.16172 -14.10983 -13.81612 -13.68414 -13.53410 -13.16205 -13.13576 -12.90675 -12.84394 -12.46035 -12.20601 -12.15001 -12.10839 -12.04221 -11.77480 -11.61447 -11.58902 -11.32842 -10.79868 -10.53988 -10.09694 -9.71979 -8.52236 -8.21241 -6.01899 0.63779 0.72565 1.17202 1.34294 1.41987 1.55579 1.80348 1.92095 2.21979 2.47762 3.02446 3.15330 3.18647 3.67597 3.90980 3.99125 4.11748 4.19146 4.22109 4.28494 4.33342 4.34129 4.42505 4.43731 4.50332 4.58966 4.66335 4.72878 4.86998 4.89817 4.95767 5.04070 5.20770 5.24846 5.32487 5.37152 5.41830 5.51359 5.59784 5.88841 5.89022 6.06928 6.43101 6.52580 6.72554 6.83018 7.04267 7.44942 7.97154 8.64773 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037646 B = 0.001796 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.583401 B =15584.047862 C =15948.679029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.538 6.538 5 C -0.074 4.074 6 H 0.121 0.879 7 C -0.144 4.144 8 C -0.047 4.047 9 C -0.149 4.149 10 C -0.065 4.065 11 C -0.208 4.208 12 C 0.206 3.794 13 N -0.737 5.737 14 C 0.130 3.870 15 C 0.429 3.571 16 O -0.631 6.631 17 N -0.560 5.560 18 C -0.339 4.339 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.914 5.914 22 Si 0.995 3.005 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.211 4.211 27 C -0.060 4.060 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.402 0.598 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.400 0.600 42 H 0.280 0.720 43 H 0.127 0.873 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.045 -6.238 -1.603 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.311 3.689 4 O -0.428 6.428 5 C -0.093 4.093 6 H 0.139 0.861 7 C -0.201 4.201 8 C -0.085 4.085 9 C -0.151 4.151 10 C -0.083 4.083 11 C -0.231 4.231 12 C 0.102 3.898 13 N -0.368 5.368 14 C 0.002 3.998 15 C 0.216 3.784 16 O -0.519 6.519 17 N -0.196 5.196 18 C -0.468 4.468 19 H 0.099 0.901 20 C -0.209 4.209 21 N -0.554 5.554 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.234 4.234 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.239 0.761 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.234 0.766 42 H 0.090 0.910 43 H 0.145 0.855 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.832 -5.920 -1.989 26.576 hybrid contribution 0.961 0.275 -0.080 1.003 sum -24.870 -5.646 -2.069 25.587 Atomic orbital electron populations 1.23528 0.75095 1.05591 1.02434 1.86516 1.24761 1.33071 1.83606 1.24261 0.92726 0.81011 0.70868 1.90655 1.68029 1.37333 1.46793 1.21123 0.85294 0.99185 1.03709 0.86136 1.21841 1.02625 1.00795 0.94837 1.20237 0.90984 0.93488 1.03765 1.19487 0.94773 1.07746 0.93064 1.20926 0.93256 0.96457 0.97691 1.20714 0.94322 1.11151 0.96866 1.18131 0.82633 0.93975 0.95066 1.44509 1.02681 1.81386 1.08236 1.20789 0.86587 1.03601 0.88841 1.20703 0.88536 0.83202 0.85940 1.90476 1.83671 1.57946 1.19813 1.41838 1.05600 1.63443 1.08707 1.19731 0.82522 1.50184 0.94403 0.90088 1.26066 1.04394 0.95844 0.94599 1.69665 1.36294 1.49324 1.00130 0.84846 0.76674 0.78392 0.78270 1.19801 1.19555 1.19489 1.20846 0.96001 1.11045 0.95476 1.20971 0.92082 0.95927 0.98841 0.92064 0.85255 0.92038 0.90836 0.90222 0.91867 0.90617 0.90783 0.84498 0.86161 0.76138 0.88875 0.88691 0.76560 0.91050 0.85539 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.55 113.37 1.20 1.48 16 2 O -0.36 -5.71 10.47 -51.44 -0.54 -6.25 16 3 C 0.47 8.40 7.26 71.23 0.52 8.92 16 4 O -0.54 -12.69 15.67 21.96 0.34 -12.35 16 5 C -0.07 -1.07 2.81 -11.54 -0.03 -1.11 16 6 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 7 C -0.14 -1.82 8.68 71.98 0.62 -1.19 16 8 C -0.05 -0.77 4.19 29.85 0.12 -0.65 16 9 C -0.15 -2.81 4.72 -19.84 -0.09 -2.90 16 10 C -0.06 -1.31 9.69 22.25 0.22 -1.10 16 11 C -0.21 -5.14 9.90 22.40 0.22 -4.91 16 12 C 0.21 5.70 6.65 38.21 0.25 5.96 16 13 N -0.74 -23.96 5.70 -343.13 -1.96 -25.92 16 14 C 0.13 4.37 5.39 85.63 0.46 4.83 16 15 C 0.43 19.71 7.85 87.66 0.69 20.39 16 16 O -0.63 -33.68 15.24 -3.06 -0.05 -33.73 16 17 N -0.56 -27.74 5.29 -306.97 -1.62 -29.36 16 18 C -0.34 -18.73 9.68 84.04 0.81 -17.92 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 21 N -0.91 -47.75 13.05 21.66 0.28 -47.46 16 22 Si 0.99 41.73 29.55 68.60 2.03 43.76 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 C -0.21 -5.08 9.31 22.40 0.21 -4.87 16 27 C -0.06 -1.18 7.93 22.25 0.18 -1.00 16 28 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 29 H 0.13 0.56 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 31 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 32 H 0.08 1.07 6.26 -2.38 -0.01 1.05 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 35 H 0.07 1.27 7.90 -2.39 -0.02 1.26 16 36 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.40 14.36 7.45 -92.71 -0.69 13.67 16 39 H 0.09 2.80 7.95 -2.39 -0.02 2.78 16 40 H 0.10 2.82 7.95 -2.39 -0.02 2.80 16 41 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 42 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 43 H 0.13 2.85 6.73 -2.91 -0.02 2.83 16 44 H 0.14 2.11 8.02 -2.91 -0.02 2.09 16 Total: -1.00 -67.41 375.05 3.94 -63.46 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: -0.39 Total: 41.88 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 5.84 Total: 5.97 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -3.30 Total: -102.74 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.24 Total: -52.33 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -67.41 3.94 -63.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184363953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.675 kcal (2) G-P(sol) polarization free energy of solvation -67.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds