Wall clock time and date at job start Tue Mar 31 2020 13:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99838 * 2 1 4 4 O 1.20824 * 119.99814 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00084 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47372 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47267 * 180.02562 * 6 5 3 8 8 C 1.38282 * 119.93061 * 90.00314 * 7 6 5 9 9 C 1.38108 * 120.07195 * 180.02562 * 8 7 6 10 10 C 1.38873 * 119.92949 * 359.97438 * 9 8 7 11 11 N 1.39937 * 120.07226 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00063 * 143.70003 * 11 10 9 13 13 O 1.21580 * 119.99915 * 4.69800 * 12 11 10 14 14 N 1.34772 * 119.99993 * 184.70090 * 12 11 10 15 15 C 1.46503 * 119.99997 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.46915 * 35.00533 * 15 14 12 17 17 C 1.52996 * 109.47379 * 275.00064 * 15 14 12 18 18 C 1.50701 * 109.46937 * 155.00039 * 15 14 12 19 19 H 1.08000 * 120.00017 * 5.57342 * 18 15 14 20 20 C 1.37874 * 119.99968 * 185.57050 * 18 15 14 21 21 N 1.31520 * 120.00254 * 197.30411 * 20 18 15 22 22 Si 1.86798 * 120.00033 * 17.58047 * 20 18 15 23 23 H 1.48496 * 109.47451 * 179.72245 * 22 20 18 24 24 H 1.48498 * 109.47291 * 299.72719 * 22 20 18 25 25 H 1.48502 * 109.46980 * 59.72474 * 22 20 18 26 26 C 1.38870 * 119.85556 * 0.25744 * 10 9 8 27 27 C 1.38116 * 119.93044 * 359.49118 * 26 10 9 28 28 H 1.09003 * 109.47175 * 60.00432 * 1 2 3 29 29 H 1.09006 * 109.46931 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47438 * 299.99891 * 1 2 3 31 31 H 1.09000 * 109.47265 * 60.00236 * 5 3 2 32 32 H 1.08996 * 109.47690 * 299.99975 * 5 3 2 33 33 H 1.09000 * 109.46879 * 59.99821 * 6 5 3 34 34 H 1.09009 * 109.46848 * 300.00464 * 6 5 3 35 35 H 1.08003 * 119.96513 * 0.03470 * 8 7 6 36 36 H 1.08000 * 120.03972 * 179.97438 * 9 8 7 37 37 H 0.97005 * 120.00196 * 323.70099 * 11 10 9 38 38 H 0.97005 * 120.00041 * 0.02562 * 14 12 11 39 39 H 1.08997 * 109.46955 * 186.28990 * 17 15 14 40 40 H 1.08994 * 109.47620 * 306.29035 * 17 15 14 41 41 H 1.09007 * 109.47058 * 66.29258 * 17 15 14 42 42 H 0.97002 * 119.99504 * 355.01931 * 21 20 18 43 43 H 1.07998 * 120.03120 * 179.72102 * 26 10 9 44 44 H 1.07995 * 119.96063 * 180.25018 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 6 5.5049 2.8211 0.0011 8 6 6.1939 2.8578 -1.1974 9 6 7.5731 2.9295 -1.2008 10 6 8.2681 2.9655 0.0010 11 7 9.6656 3.0377 0.0010 12 6 10.3029 3.7625 0.9416 13 8 9.6704 4.2834 1.8398 14 7 11.6414 3.9100 0.8865 15 6 12.3342 4.6984 1.9087 16 1 11.8374 4.5642 2.8696 17 6 12.3023 6.1779 1.5202 18 6 13.7651 4.2375 2.0144 19 1 14.1476 3.5010 1.3233 20 6 14.5859 4.7561 2.9933 21 7 15.8911 4.6307 2.8916 22 14 13.8438 5.6301 4.4680 23 1 14.9303 6.0857 5.3718 24 1 13.0601 6.8035 4.0052 25 1 12.9507 4.6958 5.1993 26 6 7.5734 2.9236 1.2027 27 6 6.1939 2.8571 1.1994 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7811 0.8908 33 1 3.6099 3.2361 0.8911 34 1 3.6105 3.2366 -0.8890 35 1 5.6528 2.8304 -2.1317 36 1 8.1107 2.9577 -2.1371 37 1 10.1756 2.5660 -0.6761 38 1 12.1461 3.4948 0.1697 39 1 12.9115 6.7503 2.2197 40 1 12.6980 6.2974 0.5117 41 1 11.2747 6.5400 1.5527 42 1 16.2734 4.1116 2.1667 43 1 8.1113 2.9469 2.1390 44 1 5.6530 2.8287 2.1337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187057258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:01 Heat of formation + Delta-G solvation = -98.676037 kcal Electronic energy + Delta-G solvation = -25501.109147 eV Core-core repulsion = 21611.340029 eV Total energy + Delta-G solvation = -3889.769118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86047 -40.32460 -38.77420 -36.98791 -35.65859 -34.66459 -33.33418 -32.40088 -30.91138 -30.09963 -28.99747 -27.69138 -24.97340 -24.64766 -22.95991 -22.06445 -21.10664 -20.51990 -19.88625 -18.51887 -18.05941 -17.62666 -17.04468 -16.94287 -16.90378 -15.56777 -15.39523 -14.89980 -14.74449 -14.28698 -14.08698 -13.87682 -13.71252 -13.41960 -13.30772 -13.18887 -13.02215 -12.63907 -12.51688 -12.26087 -12.13304 -11.76818 -11.60335 -11.56179 -11.44021 -11.22006 -11.04812 -10.85372 -10.49360 -10.13298 -9.97770 -9.83606 -9.55927 -9.11692 -8.88325 -8.36425 -8.32431 -7.85696 -6.61502 -4.24864 1.27395 1.44160 1.83495 2.35926 3.05027 3.37784 3.43909 3.51513 3.59415 3.89729 4.31336 4.39715 4.60244 4.67224 4.68881 4.73249 4.76396 4.88175 4.93556 5.03894 5.13276 5.14884 5.19327 5.34184 5.40794 5.62753 5.78223 5.81053 6.00012 6.02960 6.30238 6.33254 6.42983 6.54065 6.59257 6.65764 6.67028 6.88298 7.10448 7.15706 7.35632 7.36159 7.43724 7.74447 8.20843 8.56718 8.70444 9.06298 9.44214 10.79521 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.001961 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.038562 B =14275.464511 C =14604.073337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.508 6.508 5 C -0.109 4.109 6 C -0.062 4.062 7 C -0.115 4.115 8 C -0.096 4.096 9 C -0.152 4.152 10 C 0.178 3.822 11 N -0.697 5.697 12 C 0.694 3.306 13 O -0.584 6.584 14 N -0.713 5.713 15 C 0.258 3.742 16 H 0.042 0.958 17 C -0.161 4.161 18 C -0.618 4.618 19 H 0.061 0.939 20 C 0.039 3.961 21 N -0.897 5.897 22 Si 1.042 2.958 23 H -0.283 1.283 24 H -0.271 1.271 25 H -0.280 1.280 26 C -0.117 4.117 27 C -0.094 4.094 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.403 0.597 38 H 0.391 0.609 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.030 0.970 42 H 0.269 0.731 43 H 0.142 0.858 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.448 -9.481 -9.510 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.395 6.395 5 C -0.146 4.146 6 C -0.100 4.100 7 C -0.116 4.116 8 C -0.114 4.114 9 C -0.173 4.173 10 C 0.082 3.918 11 N -0.345 5.345 12 C 0.394 3.606 13 O -0.462 6.462 14 N -0.363 5.363 15 C 0.154 3.846 16 H 0.060 0.940 17 C -0.220 4.220 18 C -0.656 4.656 19 H 0.079 0.921 20 C -0.167 4.167 21 N -0.530 5.530 22 Si 0.870 3.130 23 H -0.209 1.209 24 H -0.197 1.197 25 H -0.206 1.206 26 C -0.138 4.138 27 C -0.113 4.113 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.238 0.762 38 H 0.223 0.777 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.160 0.840 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.704 -7.814 -7.262 27.830 hybrid contribution 0.032 -1.282 -2.230 2.572 sum -25.673 -9.096 -9.492 28.843 Atomic orbital electron populations 1.23270 0.76333 1.03715 1.02589 1.86523 1.23499 1.33701 1.84140 1.23982 0.92420 0.81232 0.72070 1.90683 1.67348 1.36339 1.45170 1.21470 0.86668 1.00090 1.06399 1.20318 0.91552 0.93642 1.04472 1.19609 0.94509 1.04104 0.93413 1.20721 0.93233 1.00129 0.97357 1.20863 0.94360 1.05574 0.96494 1.17590 0.82153 0.98184 0.93829 1.42808 1.04755 1.53169 1.33730 1.16162 0.83032 0.79379 0.82030 1.90867 1.65734 1.53665 1.35936 1.45591 1.03774 1.55190 1.31787 1.18944 0.92214 0.86922 0.86492 0.94025 1.22521 0.99033 0.99112 1.01339 1.22066 0.94813 1.29310 1.19413 0.92078 1.25691 0.94386 0.96532 1.00138 1.70890 1.10720 1.36141 1.35207 0.84073 0.75603 0.77241 0.76103 1.20883 1.19704 1.20563 1.21391 0.94027 0.99877 0.98465 1.20933 0.93676 0.99307 0.97398 0.91888 0.88089 0.91859 0.87384 0.87295 0.90129 0.90233 0.85993 0.85903 0.76165 0.77657 0.91854 0.93786 0.95101 0.92121 0.84024 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.55 101.05 1.07 1.26 16 2 O -0.36 -2.92 10.57 -39.26 -0.41 -3.34 16 3 C 0.46 4.07 7.96 36.00 0.29 4.36 16 4 O -0.51 -5.92 15.73 -18.75 -0.29 -6.21 16 5 C -0.11 -0.74 5.79 -27.88 -0.16 -0.91 16 6 C -0.06 -0.52 4.63 -27.88 -0.13 -0.65 16 7 C -0.12 -1.17 5.14 -104.59 -0.54 -1.70 16 8 C -0.10 -0.94 9.69 -39.61 -0.38 -1.33 16 9 C -0.15 -1.70 9.97 -39.39 -0.39 -2.09 16 10 C 0.18 2.50 6.27 -83.69 -0.52 1.97 16 11 N -0.70 -10.12 5.34 -14.23 -0.08 -10.20 16 12 C 0.69 13.31 8.37 -86.92 -0.73 12.59 16 13 O -0.58 -13.19 13.53 5.30 0.07 -13.12 16 14 N -0.71 -14.19 5.07 -59.82 -0.30 -14.50 16 15 C 0.26 6.15 2.14 -69.08 -0.15 6.01 16 16 H 0.04 1.08 6.23 -51.93 -0.32 0.76 16 17 C -0.16 -3.66 9.16 37.16 0.34 -3.32 16 18 C -0.62 -16.51 9.00 -34.44 -0.31 -16.82 16 19 H 0.06 1.70 7.96 -52.49 -0.42 1.28 16 20 C 0.04 1.09 5.29 -17.82 -0.09 1.00 16 21 N -0.90 -26.43 13.70 55.43 0.76 -25.67 16 22 Si 1.04 24.93 26.29 -169.99 -4.47 20.46 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.09 5.76 56.52 0.33 -5.76 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.12 -1.72 8.69 -39.39 -0.34 -2.06 16 27 C -0.09 -1.11 9.69 -39.61 -0.38 -1.50 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 34 H 0.08 0.66 8.04 -51.92 -0.42 0.25 16 35 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.40 4.48 8.84 -40.82 -0.36 4.12 16 38 H 0.39 6.79 8.55 -40.82 -0.35 6.44 16 39 H 0.06 1.47 4.88 -51.93 -0.25 1.21 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 43 H 0.14 2.42 6.34 -52.49 -0.33 2.09 16 44 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -33.73 371.31 -7.90 -41.63 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.33 Total: 8.54 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.44 Total: -3.20 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.38 Total: -50.36 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.64 Total: -22.67 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.47 Total: 20.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.73 -7.90 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187057258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.050 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds