Wall clock time and date at job start Tue Mar 31 2020 13:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99838 * 2 1 4 4 O 1.20824 * 119.99814 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00084 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47372 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47267 * 180.02562 * 6 5 3 8 8 C 1.38282 * 119.93061 * 90.00314 * 7 6 5 9 9 C 1.38108 * 120.07195 * 180.02562 * 8 7 6 10 10 C 1.38873 * 119.92949 * 359.97438 * 9 8 7 11 11 N 1.39937 * 120.07226 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00063 * 143.70003 * 11 10 9 13 13 O 1.21580 * 119.99915 * 4.69800 * 12 11 10 14 14 N 1.34772 * 119.99993 * 184.70090 * 12 11 10 15 15 C 1.46503 * 119.99997 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.46915 * 35.00533 * 15 14 12 17 17 C 1.52996 * 109.47379 * 275.00064 * 15 14 12 18 18 C 1.50701 * 109.46937 * 155.00039 * 15 14 12 19 19 H 1.08000 * 120.00017 * 5.57342 * 18 15 14 20 20 C 1.37874 * 119.99968 * 185.57050 * 18 15 14 21 21 N 1.31520 * 120.00254 * 197.30411 * 20 18 15 22 22 Si 1.86798 * 120.00033 * 17.58047 * 20 18 15 23 23 H 1.48496 * 109.47451 * 179.72245 * 22 20 18 24 24 H 1.48498 * 109.47291 * 299.72719 * 22 20 18 25 25 H 1.48502 * 109.46980 * 59.72474 * 22 20 18 26 26 C 1.38870 * 119.85556 * 0.25744 * 10 9 8 27 27 C 1.38116 * 119.93044 * 359.49118 * 26 10 9 28 28 H 1.09003 * 109.47175 * 60.00432 * 1 2 3 29 29 H 1.09006 * 109.46931 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47438 * 299.99891 * 1 2 3 31 31 H 1.09000 * 109.47265 * 60.00236 * 5 3 2 32 32 H 1.08996 * 109.47690 * 299.99975 * 5 3 2 33 33 H 1.09000 * 109.46879 * 59.99821 * 6 5 3 34 34 H 1.09009 * 109.46848 * 300.00464 * 6 5 3 35 35 H 1.08003 * 119.96513 * 0.03470 * 8 7 6 36 36 H 1.08000 * 120.03972 * 179.97438 * 9 8 7 37 37 H 0.97005 * 120.00196 * 323.70099 * 11 10 9 38 38 H 0.97005 * 120.00041 * 0.02562 * 14 12 11 39 39 H 1.08997 * 109.46955 * 186.28990 * 17 15 14 40 40 H 1.08994 * 109.47620 * 306.29035 * 17 15 14 41 41 H 1.09007 * 109.47058 * 66.29258 * 17 15 14 42 42 H 0.97002 * 119.99504 * 355.01931 * 21 20 18 43 43 H 1.07998 * 120.03120 * 179.72102 * 26 10 9 44 44 H 1.07995 * 119.96063 * 180.25018 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 6 5.5049 2.8211 0.0011 8 6 6.1939 2.8578 -1.1974 9 6 7.5731 2.9295 -1.2008 10 6 8.2681 2.9655 0.0010 11 7 9.6656 3.0377 0.0010 12 6 10.3029 3.7625 0.9416 13 8 9.6704 4.2834 1.8398 14 7 11.6414 3.9100 0.8865 15 6 12.3342 4.6984 1.9087 16 1 11.8374 4.5642 2.8696 17 6 12.3023 6.1779 1.5202 18 6 13.7651 4.2375 2.0144 19 1 14.1476 3.5010 1.3233 20 6 14.5859 4.7561 2.9933 21 7 15.8911 4.6307 2.8916 22 14 13.8438 5.6301 4.4680 23 1 14.9303 6.0857 5.3718 24 1 13.0601 6.8035 4.0052 25 1 12.9507 4.6958 5.1993 26 6 7.5734 2.9236 1.2027 27 6 6.1939 2.8571 1.1994 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7811 0.8908 33 1 3.6099 3.2361 0.8911 34 1 3.6105 3.2366 -0.8890 35 1 5.6528 2.8304 -2.1317 36 1 8.1107 2.9577 -2.1371 37 1 10.1756 2.5660 -0.6761 38 1 12.1461 3.4948 0.1697 39 1 12.9115 6.7503 2.2197 40 1 12.6980 6.2974 0.5117 41 1 11.2747 6.5400 1.5527 42 1 16.2734 4.1116 2.1667 43 1 8.1113 2.9469 2.1390 44 1 5.6530 2.8287 2.1337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187057258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:00 Heat of formation + Delta-G solvation = -120.763111 kcal Electronic energy + Delta-G solvation = -25502.066914 eV Core-core repulsion = 21611.340029 eV Total energy + Delta-G solvation = -3890.726886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67272 -41.45085 -39.90294 -37.68379 -37.12480 -36.07669 -34.63345 -34.02964 -31.82152 -31.59505 -30.02306 -28.34101 -26.88701 -25.58503 -23.95711 -23.31541 -22.13625 -21.56472 -21.34353 -20.20906 -19.12283 -18.71178 -18.40591 -17.64888 -17.53977 -16.85640 -16.50603 -16.16716 -16.04648 -15.51322 -15.13467 -14.90852 -14.88991 -14.58639 -14.40399 -14.36141 -14.16538 -13.99502 -13.71462 -13.57372 -13.38382 -13.14066 -12.79667 -12.46068 -12.42631 -12.29790 -11.96407 -11.88638 -11.75851 -11.67327 -11.55656 -11.32513 -11.15347 -10.96831 -10.47351 -10.00109 -9.80518 -8.95117 -8.79485 -6.45137 0.33572 0.53115 1.18366 1.46454 1.51334 1.67634 1.76205 1.80457 2.12344 2.41332 2.89864 3.00781 3.34456 3.69841 3.93072 4.00268 4.13338 4.19856 4.27594 4.33564 4.34603 4.45901 4.53956 4.58246 4.62737 4.70326 4.72899 4.74541 4.77854 4.96743 5.04496 5.14086 5.17958 5.35232 5.37990 5.44189 5.45496 5.58428 5.62309 5.66744 5.74142 5.99607 6.14776 6.16333 6.52040 6.72761 7.12133 7.28366 7.57904 8.59100 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.001961 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.038562 B =14275.464511 C =14604.073337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.462 3.538 4 O -0.542 6.542 5 C -0.103 4.103 6 C -0.058 4.058 7 C -0.102 4.102 8 C -0.090 4.090 9 C -0.142 4.142 10 C 0.148 3.852 11 N -0.679 5.679 12 C 0.694 3.306 13 O -0.621 6.621 14 N -0.713 5.713 15 C 0.262 3.738 16 H 0.023 0.977 17 C -0.153 4.153 18 C -0.613 4.613 19 H 0.042 0.958 20 C -0.004 4.004 21 N -0.926 5.926 22 Si 1.072 2.928 23 H -0.281 1.281 24 H -0.248 1.248 25 H -0.274 1.274 26 C -0.143 4.143 27 C -0.100 4.100 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.420 0.580 38 H 0.403 0.597 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.036 0.964 42 H 0.258 0.742 43 H 0.107 0.893 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.789 -9.990 -11.220 31.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.432 6.432 5 C -0.140 4.140 6 C -0.095 4.095 7 C -0.103 4.103 8 C -0.108 4.108 9 C -0.163 4.163 10 C 0.053 3.947 11 N -0.328 5.328 12 C 0.395 3.605 13 O -0.501 6.501 14 N -0.365 5.365 15 C 0.157 3.843 16 H 0.041 0.959 17 C -0.212 4.212 18 C -0.651 4.651 19 H 0.060 0.940 20 C -0.205 4.205 21 N -0.560 5.560 22 Si 0.895 3.105 23 H -0.207 1.207 24 H -0.172 1.172 25 H -0.200 1.200 26 C -0.163 4.163 27 C -0.119 4.119 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.174 0.826 36 H 0.166 0.834 37 H 0.258 0.742 38 H 0.237 0.763 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.125 0.875 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.073 -8.377 -9.038 30.659 hybrid contribution 0.600 -1.246 -1.783 2.257 sum -27.473 -9.624 -10.821 31.056 Atomic orbital electron populations 1.23516 0.75085 1.05555 1.02423 1.86516 1.24821 1.33247 1.83744 1.24316 0.93067 0.80929 0.70997 1.90674 1.68209 1.37372 1.46929 1.21475 0.85397 0.99189 1.07989 1.20265 0.90030 0.94818 1.04408 1.19795 0.95382 1.02227 0.92898 1.21139 0.92831 0.98299 0.98550 1.21133 0.94980 1.03961 0.96193 1.17844 0.81581 1.00464 0.94807 1.42486 1.05323 1.52150 1.32821 1.16216 0.82482 0.79486 0.82358 1.90847 1.66367 1.55264 1.37635 1.45269 1.04363 1.55401 1.31514 1.18629 0.90513 0.88186 0.86984 0.95903 1.22390 0.99315 0.97860 1.01615 1.22224 0.96278 1.28183 1.18387 0.93975 1.26793 0.94208 0.97234 1.02264 1.70989 1.11803 1.37758 1.35491 0.83685 0.75423 0.77557 0.73847 1.20711 1.17238 1.19967 1.21257 0.95274 1.02217 0.97598 1.21058 0.92655 0.99280 0.98881 0.91932 0.85313 0.92212 0.85200 0.86182 0.90928 0.89715 0.82572 0.83361 0.74182 0.76257 0.92448 0.92914 0.94488 0.93221 0.87462 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.55 113.37 1.20 1.46 16 2 O -0.37 -5.19 10.57 -51.43 -0.54 -5.74 16 3 C 0.46 7.29 7.96 71.23 0.57 7.86 16 4 O -0.54 -11.96 15.73 21.97 0.35 -11.62 16 5 C -0.10 -1.12 5.79 29.85 0.17 -0.94 16 6 C -0.06 -0.81 4.63 29.85 0.14 -0.68 16 7 C -0.10 -1.79 5.14 -19.85 -0.10 -1.89 16 8 C -0.09 -1.42 9.69 22.25 0.22 -1.21 16 9 C -0.14 -2.72 9.97 22.39 0.22 -2.50 16 10 C 0.15 3.96 6.27 38.15 0.24 4.20 16 11 N -0.68 -19.06 5.34 -317.18 -1.69 -20.76 16 12 C 0.69 26.54 8.37 179.06 1.50 28.04 16 13 O -0.62 -28.47 13.53 -3.97 -0.05 -28.52 16 14 N -0.71 -28.21 5.07 -461.42 -2.34 -30.55 16 15 C 0.26 12.47 2.14 44.24 0.09 12.56 16 16 H 0.02 1.20 6.23 -2.39 -0.01 1.18 16 17 C -0.15 -6.80 9.16 71.98 0.66 -6.14 16 18 C -0.61 -33.03 9.00 25.60 0.23 -32.80 16 19 H 0.04 2.38 7.96 -2.91 -0.02 2.36 16 20 C 0.00 -0.22 5.29 84.65 0.45 0.23 16 21 N -0.93 -55.40 13.70 21.45 0.29 -55.10 16 22 Si 1.07 50.15 26.29 68.60 1.80 51.95 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.25 -10.61 5.76 99.48 0.57 -10.03 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 C -0.14 -4.21 8.69 22.39 0.19 -4.02 16 27 C -0.10 -2.27 9.69 22.25 0.22 -2.05 16 28 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 29 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.61 8.13 -2.38 -0.02 0.59 16 31 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.17 8.04 -2.39 -0.02 1.15 16 34 H 0.08 1.15 8.04 -2.38 -0.02 1.13 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.42 8.64 8.84 -92.70 -0.82 7.82 16 38 H 0.40 13.76 8.55 -92.70 -0.79 12.97 16 39 H 0.06 2.59 4.88 -2.39 -0.01 2.57 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.26 15.47 8.73 -92.71 -0.81 14.66 16 43 H 0.11 3.88 6.34 -2.91 -0.02 3.86 16 44 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -74.35 371.31 3.06 -71.29 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.75 Total: 26.91 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.99 Total: 2.13 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.74 Total: -106.41 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.25 Total: -45.87 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.80 Total: 51.95 kcal Total: -74.35 3.06 -71.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187057258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.469 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds