Wall clock time and date at job start Tue Mar 31 2020 13:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46967 * 2 1 4 4 C 1.50698 * 109.46820 * 119.99533 * 2 1 3 5 5 C 1.38384 * 119.85691 * 291.52885 * 4 2 1 6 6 C 1.37933 * 120.14677 * 180.02562 * 5 4 2 7 7 C 1.39595 * 119.85298 * 359.97438 * 6 5 4 8 8 C 1.47847 * 120.14358 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00087 * 218.11418 * 8 7 6 10 10 N 1.34781 * 120.00033 * 38.11600 * 8 7 6 11 11 C 1.46496 * 119.99699 * 356.53477 * 10 8 7 12 12 C 1.46499 * 119.99896 * 176.54198 * 10 8 7 13 13 H 1.08996 * 109.47383 * 359.97438 * 12 10 8 14 14 C 1.52999 * 109.46902 * 239.99548 * 12 10 8 15 15 C 1.50706 * 109.47229 * 119.99586 * 12 10 8 16 16 H 1.08000 * 119.99765 * 359.97438 * 15 12 10 17 17 C 1.37870 * 119.99810 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00437 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99748 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.47266 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47404 * 300.00149 * 19 17 15 22 22 H 1.48496 * 109.47174 * 60.00518 * 19 17 15 23 23 C 1.39555 * 119.71466 * 0.26873 * 7 6 5 24 24 C 1.37984 * 119.84627 * 359.49307 * 23 7 6 25 25 N 1.48019 * 119.92572 * 180.22772 * 24 23 7 26 26 O 1.21807 * 119.99641 * 8.32314 * 25 24 23 27 27 O 1.21798 * 119.99999 * 188.31198 * 25 24 23 28 28 H 1.09000 * 109.47089 * 300.00443 * 1 2 3 29 29 H 1.09003 * 109.46712 * 60.00388 * 1 2 3 30 30 H 1.08992 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47315 * 239.99172 * 2 1 3 32 32 H 1.09000 * 109.47578 * 59.99856 * 3 2 1 33 33 H 1.09001 * 109.46635 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46570 * 299.99434 * 3 2 1 35 35 H 1.07996 * 119.92429 * 0.02562 * 5 4 2 36 36 H 1.07999 * 120.07247 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47388 * 274.98629 * 11 10 8 38 38 H 1.09002 * 109.47207 * 34.99346 * 11 10 8 39 39 H 1.09007 * 109.46746 * 154.99201 * 11 10 8 40 40 H 1.09002 * 109.47057 * 179.97438 * 14 12 10 41 41 H 1.08996 * 109.47117 * 300.00182 * 14 12 10 42 42 H 1.08998 * 109.46854 * 60.00194 * 14 12 10 43 43 H 0.96999 * 120.00323 * 179.97438 * 18 17 15 44 44 H 1.07991 * 120.07810 * 179.72868 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.8467 -0.1415 2.4783 6 6 2.3044 -0.7862 3.6086 7 6 2.9557 -2.0154 3.4917 8 6 3.4495 -2.7117 4.6988 9 8 4.5084 -3.3075 4.6663 10 7 2.7253 -2.6859 5.8353 11 6 1.4872 -1.9053 5.8972 12 6 3.1765 -3.4383 7.0085 13 1 4.1084 -3.9526 6.7740 14 6 2.1111 -4.4656 7.3963 15 6 3.4014 -2.4896 8.1577 16 1 3.2261 -1.4319 8.0270 17 6 3.8308 -2.9719 9.3758 18 7 4.0447 -4.2597 9.5349 19 14 4.1102 -1.7959 10.8000 20 1 4.5674 -2.5585 11.9894 21 1 5.1450 -0.7995 10.4237 22 1 2.8407 -1.0946 11.1192 23 6 3.1442 -2.5811 2.2299 24 6 2.6770 -1.9281 1.1078 25 7 2.8716 -2.5290 -0.2309 26 8 3.3047 -3.6629 -0.3323 27 8 2.5983 -1.8897 -1.2309 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.3423 0.8093 2.5674 36 1 2.1593 -0.3410 4.5817 37 1 1.7220 -0.8707 6.1471 38 1 0.9864 -1.9409 4.9297 39 1 0.8318 -2.3238 6.6612 40 1 2.4470 -5.0257 8.2689 41 1 1.1790 -3.9515 7.6306 42 1 1.9485 -5.1517 6.5651 43 1 4.3471 -4.5990 10.3918 44 1 3.6512 -3.5296 2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189707235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:33 Heat of formation + Delta-G solvation = 4.848276 kcal Electronic energy + Delta-G solvation = -27375.289007 eV Core-core repulsion = 23490.009040 eV Total energy + Delta-G solvation = -3885.279967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48531 -40.42079 -38.78786 -36.99646 -35.65683 -35.42733 -33.20652 -32.13502 -30.73844 -29.30386 -27.46700 -26.84769 -26.33695 -25.35358 -24.63111 -22.94289 -21.55916 -20.93704 -19.58831 -18.81035 -18.28719 -17.69292 -16.78974 -16.65960 -16.23060 -15.60696 -15.49813 -14.81824 -14.60860 -14.55680 -14.14565 -13.92293 -13.59445 -13.16105 -12.89576 -12.77965 -12.62078 -12.43119 -12.37226 -12.15594 -11.72525 -11.59075 -11.46328 -11.43793 -11.34375 -11.29015 -11.16388 -10.92097 -10.84979 -10.39698 -10.28540 -9.90427 -9.76335 -9.43445 -9.34582 -9.17134 -8.54142 -7.84659 -6.17933 -4.27161 -0.30104 0.55259 1.18041 1.24027 2.76287 3.20455 3.26713 3.27098 3.41160 3.59056 4.02925 4.13517 4.29650 4.50533 4.61230 4.66533 4.80218 4.84261 4.89739 5.11438 5.13530 5.30345 5.32187 5.43232 5.46067 5.50628 5.60235 5.62477 5.71025 5.79801 5.84404 5.87529 5.90841 6.05515 6.12860 6.59582 6.62399 6.67551 6.89514 7.20572 7.33116 7.55683 7.57703 7.86311 8.03481 8.27464 8.61567 8.79538 9.39613 10.87445 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.003173 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.620141 B = 8822.472372 C = 9527.942422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C -0.138 4.138 4 C 0.008 3.992 5 C -0.128 4.128 6 C -0.040 4.040 7 C -0.118 4.118 8 C 0.544 3.456 9 O -0.535 6.535 10 N -0.580 5.580 11 C 0.077 3.923 12 C 0.258 3.742 13 H 0.066 0.934 14 C -0.148 4.148 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.900 3.100 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.004 4.004 24 C -0.055 4.055 25 N 0.040 4.960 26 O -0.148 6.148 27 O -0.167 6.167 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.154 0.846 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.031 0.969 42 H 0.013 0.987 43 H 0.266 0.734 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 10.017 -15.287 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C -0.196 4.196 4 C 0.006 3.994 5 C -0.146 4.146 6 C -0.058 4.058 7 C -0.122 4.122 8 C 0.330 3.670 9 O -0.413 6.413 10 N -0.310 5.310 11 C -0.066 4.066 12 C 0.159 3.841 13 H 0.084 0.916 14 C -0.207 4.207 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.728 3.272 20 H -0.211 1.211 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.024 4.024 24 C -0.138 4.138 25 N 0.555 4.445 26 O -0.368 6.368 27 O -0.373 6.373 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.170 0.830 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.572 9.867 -14.500 19.521 hybrid contribution 0.113 0.538 0.696 0.887 sum -8.459 10.405 -13.804 19.245 Atomic orbital electron populations 1.21767 0.93422 1.01932 1.02257 1.21715 0.97154 0.97807 0.98267 1.21808 1.01246 0.94333 1.02175 1.20024 0.91591 0.90363 0.97406 1.21060 1.02241 1.01291 0.90026 1.22292 0.90250 0.92648 1.00650 1.20218 1.01436 0.96639 0.93935 1.17947 0.84948 0.81401 0.82705 1.90793 1.21931 1.44565 1.84042 1.48216 1.22655 1.47403 1.12716 1.21935 0.87467 0.95778 1.01449 1.19061 0.94909 0.89903 0.80276 0.91598 1.22121 0.98363 0.98788 1.01409 1.21222 1.46634 0.93714 0.95304 0.92266 1.24887 0.94850 0.95294 0.98622 1.69854 1.45224 1.12177 1.25114 0.86527 0.78628 0.80735 0.81335 1.21077 1.20198 1.20186 1.21023 0.92694 0.99763 0.88942 1.20722 1.12637 0.98156 0.82298 1.43629 0.97476 1.00479 1.02911 1.94581 1.45509 1.03285 1.93407 1.94061 1.54682 1.60404 1.28143 0.92631 0.91521 0.92888 0.83006 0.92650 0.92553 0.91627 0.83278 0.82469 0.92814 0.92671 0.89990 0.88513 0.94960 0.96816 0.92446 0.82179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.08 37.16 0.34 -0.70 16 2 C -0.13 -1.19 2.86 -91.77 -0.26 -1.45 16 3 C -0.14 -1.02 8.90 37.16 0.33 -0.69 16 4 C 0.01 0.08 4.80 -104.53 -0.50 -0.42 16 5 C -0.13 -1.19 8.81 -39.64 -0.35 -1.54 16 6 C -0.04 -0.45 7.60 -39.19 -0.30 -0.75 16 7 C -0.12 -1.76 5.24 -104.97 -0.55 -2.31 16 8 C 0.54 10.72 7.37 -12.33 -0.09 10.63 16 9 O -0.53 -12.78 16.22 5.32 0.09 -12.69 16 10 N -0.58 -11.47 2.75 -176.38 -0.49 -11.95 16 11 C 0.08 1.14 8.08 59.84 0.48 1.62 16 12 C 0.26 6.25 2.63 -69.08 -0.18 6.07 16 13 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 14 C -0.15 -3.37 8.96 37.16 0.33 -3.03 16 15 C -0.53 -13.61 8.37 -34.44 -0.29 -13.90 16 16 H 0.06 1.48 7.65 -52.49 -0.40 1.07 16 17 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 19 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.00 -0.06 9.13 -39.18 -0.36 -0.42 16 24 C -0.05 -0.72 6.81 -80.00 -0.55 -1.26 16 25 N 0.04 0.56 4.45 33.94 0.15 0.71 16 26 O -0.15 -2.25 18.47 -29.46 -0.54 -2.79 16 27 O -0.17 -2.23 15.09 -29.46 -0.44 -2.67 16 28 H 0.05 0.37 7.93 -51.93 -0.41 -0.04 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.15 1.58 3.78 -56.94 -0.21 1.37 16 32 H 0.05 0.35 6.95 -51.93 -0.36 -0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.15 0.95 7.07 -52.49 -0.37 0.58 16 36 H 0.16 1.58 5.21 -52.49 -0.27 1.31 16 37 H 0.05 0.71 6.78 -51.93 -0.35 0.35 16 38 H 0.05 0.65 5.92 -51.93 -0.31 0.35 16 39 H 0.08 1.25 6.44 -51.92 -0.33 0.91 16 40 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 41 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.16 2.41 7.61 -52.49 -0.40 2.01 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -30.09 357.09 -7.98 -38.07 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.70 Total: 0.85 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.03 Total: -6.52 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.29 Total: -34.86 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.90 Total: -18.15 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.09 -7.98 -38.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189707235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.921 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds