Wall clock time and date at job start Tue Mar 31 2020 13:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46967 * 2 1 4 4 C 1.50698 * 109.46820 * 119.99533 * 2 1 3 5 5 C 1.38384 * 119.85691 * 291.52885 * 4 2 1 6 6 C 1.37933 * 120.14677 * 180.02562 * 5 4 2 7 7 C 1.39595 * 119.85298 * 359.97438 * 6 5 4 8 8 C 1.47847 * 120.14358 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00087 * 218.11418 * 8 7 6 10 10 N 1.34781 * 120.00033 * 38.11600 * 8 7 6 11 11 C 1.46496 * 119.99699 * 356.53477 * 10 8 7 12 12 C 1.46499 * 119.99896 * 176.54198 * 10 8 7 13 13 H 1.08996 * 109.47383 * 359.97438 * 12 10 8 14 14 C 1.52999 * 109.46902 * 239.99548 * 12 10 8 15 15 C 1.50706 * 109.47229 * 119.99586 * 12 10 8 16 16 H 1.08000 * 119.99765 * 359.97438 * 15 12 10 17 17 C 1.37870 * 119.99810 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00437 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99748 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.47266 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47404 * 300.00149 * 19 17 15 22 22 H 1.48496 * 109.47174 * 60.00518 * 19 17 15 23 23 C 1.39555 * 119.71466 * 0.26873 * 7 6 5 24 24 C 1.37984 * 119.84627 * 359.49307 * 23 7 6 25 25 N 1.48019 * 119.92572 * 180.22772 * 24 23 7 26 26 O 1.21807 * 119.99641 * 8.32314 * 25 24 23 27 27 O 1.21798 * 119.99999 * 188.31198 * 25 24 23 28 28 H 1.09000 * 109.47089 * 300.00443 * 1 2 3 29 29 H 1.09003 * 109.46712 * 60.00388 * 1 2 3 30 30 H 1.08992 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47315 * 239.99172 * 2 1 3 32 32 H 1.09000 * 109.47578 * 59.99856 * 3 2 1 33 33 H 1.09001 * 109.46635 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46570 * 299.99434 * 3 2 1 35 35 H 1.07996 * 119.92429 * 0.02562 * 5 4 2 36 36 H 1.07999 * 120.07247 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47388 * 274.98629 * 11 10 8 38 38 H 1.09002 * 109.47207 * 34.99346 * 11 10 8 39 39 H 1.09007 * 109.46746 * 154.99201 * 11 10 8 40 40 H 1.09002 * 109.47057 * 179.97438 * 14 12 10 41 41 H 1.08996 * 109.47117 * 300.00182 * 14 12 10 42 42 H 1.08998 * 109.46854 * 60.00194 * 14 12 10 43 43 H 0.96999 * 120.00323 * 179.97438 * 18 17 15 44 44 H 1.07991 * 120.07810 * 179.72868 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.8467 -0.1415 2.4783 6 6 2.3044 -0.7862 3.6086 7 6 2.9557 -2.0154 3.4917 8 6 3.4495 -2.7117 4.6988 9 8 4.5084 -3.3075 4.6663 10 7 2.7253 -2.6859 5.8353 11 6 1.4872 -1.9053 5.8972 12 6 3.1765 -3.4383 7.0085 13 1 4.1084 -3.9526 6.7740 14 6 2.1111 -4.4656 7.3963 15 6 3.4014 -2.4896 8.1577 16 1 3.2261 -1.4319 8.0270 17 6 3.8308 -2.9719 9.3758 18 7 4.0447 -4.2597 9.5349 19 14 4.1102 -1.7959 10.8000 20 1 4.5674 -2.5585 11.9894 21 1 5.1450 -0.7995 10.4237 22 1 2.8407 -1.0946 11.1192 23 6 3.1442 -2.5811 2.2299 24 6 2.6770 -1.9281 1.1078 25 7 2.8716 -2.5290 -0.2309 26 8 3.3047 -3.6629 -0.3323 27 8 2.5983 -1.8897 -1.2309 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.3423 0.8093 2.5674 36 1 2.1593 -0.3410 4.5817 37 1 1.7220 -0.8707 6.1471 38 1 0.9864 -1.9409 4.9297 39 1 0.8318 -2.3238 6.6612 40 1 2.4470 -5.0257 8.2689 41 1 1.1790 -3.9515 7.6306 42 1 1.9485 -5.1517 6.5651 43 1 4.3471 -4.5990 10.3918 44 1 3.6512 -3.5296 2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189707235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:32 Heat of formation + Delta-G solvation = -11.574991 kcal Electronic energy + Delta-G solvation = -27376.001174 eV Core-core repulsion = 23490.009040 eV Total energy + Delta-G solvation = -3885.992133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.56144 -41.64709 -40.05745 -38.08254 -37.33584 -36.34013 -34.92219 -33.30558 -31.92755 -30.84637 -28.08481 -27.97625 -27.51667 -27.32433 -25.76120 -23.97921 -23.04990 -21.78277 -20.97116 -19.92770 -19.58402 -18.78734 -18.49777 -17.90771 -17.51609 -17.10179 -16.68638 -16.29207 -16.00097 -15.54694 -15.02189 -14.90697 -14.74207 -14.52699 -14.37601 -13.88287 -13.63395 -13.54421 -13.27523 -13.24146 -13.03459 -12.92452 -12.86040 -12.73810 -12.61307 -12.48085 -12.42348 -12.20962 -12.15423 -12.10077 -12.08969 -11.23179 -11.01562 -10.70891 -10.69663 -10.54025 -10.25515 -9.47731 -8.16296 -6.33512 -1.34459 -0.49412 0.15669 0.19902 1.42594 1.45136 1.51981 1.55107 2.04964 2.25671 2.44028 3.09460 3.12726 3.20692 3.44475 3.62213 3.66766 3.90394 4.11279 4.23535 4.29109 4.30009 4.44436 4.59370 4.62176 4.69119 4.76118 4.83226 4.84047 4.85948 4.95169 4.98165 4.98536 5.00787 5.02177 5.28284 5.30666 5.39543 5.40926 5.53076 5.61677 5.68718 5.96388 6.10767 6.46442 6.61828 6.73171 7.12879 7.39068 8.88292 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.003173 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.620141 B = 8822.472372 C = 9527.942422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.131 4.131 3 C -0.137 4.137 4 C 0.020 3.980 5 C -0.105 4.105 6 C -0.025 4.025 7 C -0.133 4.133 8 C 0.538 3.462 9 O -0.595 6.595 10 N -0.585 5.585 11 C 0.069 3.931 12 C 0.261 3.739 13 H 0.009 0.991 14 C -0.135 4.135 15 C -0.539 4.539 16 H 0.068 0.932 17 C 0.015 3.985 18 N -0.919 5.919 19 Si 0.966 3.034 20 H -0.288 1.288 21 H -0.277 1.277 22 H -0.258 1.258 23 C -0.016 4.016 24 C -0.065 4.065 25 N 0.040 4.960 26 O -0.207 6.207 27 O -0.132 6.132 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.198 0.802 36 H 0.179 0.821 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.265 0.735 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.929 14.514 -15.685 24.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C -0.195 4.195 4 C 0.018 3.982 5 C -0.123 4.123 6 C -0.043 4.043 7 C -0.137 4.137 8 C 0.326 3.674 9 O -0.478 6.478 10 N -0.313 5.313 11 C -0.072 4.072 12 C 0.160 3.840 13 H 0.027 0.973 14 C -0.193 4.193 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.791 3.209 20 H -0.213 1.213 21 H -0.202 1.202 22 H -0.183 1.183 23 C -0.036 4.036 24 C -0.148 4.148 25 N 0.552 4.448 26 O -0.412 6.412 27 O -0.350 6.350 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.153 0.847 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.215 0.785 36 H 0.196 0.804 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.428 14.271 -14.871 23.568 hybrid contribution 0.943 -0.735 0.673 1.373 sum -10.485 13.536 -14.198 22.243 Atomic orbital electron populations 1.21791 0.91774 1.01649 1.04033 1.21715 0.98353 0.98582 0.96221 1.21836 1.00647 0.92971 1.04000 1.20489 0.89626 0.88898 0.99172 1.21517 1.00538 1.02129 0.88089 1.22490 0.88609 0.90651 1.02514 1.19718 1.04179 0.98351 0.91424 1.18641 0.84106 0.80740 0.83894 1.90751 1.24666 1.47254 1.85114 1.48154 1.24211 1.47454 1.11516 1.22288 0.85255 0.96187 1.03457 1.18638 0.93267 0.90389 0.81741 0.97312 1.21914 0.98643 0.98412 1.00368 1.21528 1.46290 0.94226 0.95653 0.91358 1.25756 0.94642 0.96736 1.01365 1.70016 1.46127 1.14037 1.25590 0.85486 0.79019 0.78507 0.77871 1.21350 1.20238 1.18275 1.20810 0.93497 0.99506 0.89782 1.20788 1.13802 0.99120 0.81109 1.43823 0.97184 1.00327 1.03432 1.94603 1.48493 1.04401 1.93727 1.94061 1.52387 1.59840 1.28703 0.90661 0.90059 0.94223 0.84736 0.90557 0.93584 0.90207 0.78485 0.80367 0.90247 0.89259 0.90304 0.91195 0.92796 0.96300 0.92624 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.08 71.98 0.65 -0.76 16 2 C -0.13 -1.83 2.86 -11.54 -0.03 -1.86 16 3 C -0.14 -1.34 8.90 71.98 0.64 -0.70 16 4 C 0.02 0.36 4.80 -19.81 -0.10 0.26 16 5 C -0.10 -1.40 8.81 22.23 0.20 -1.21 16 6 C -0.02 -0.46 7.60 22.53 0.17 -0.29 16 7 C -0.13 -3.89 5.24 -20.09 -0.11 -4.00 16 8 C 0.54 21.95 7.37 86.79 0.64 22.59 16 9 O -0.60 -30.76 16.22 -3.87 -0.06 -30.83 16 10 N -0.58 -23.22 2.75 -830.21 -2.29 -25.51 16 11 C 0.07 1.86 8.08 127.77 1.03 2.89 16 12 C 0.26 13.11 2.63 44.25 0.12 13.22 16 13 H 0.01 0.54 6.90 -2.39 -0.02 0.53 16 14 C -0.13 -6.28 8.96 71.98 0.64 -5.63 16 15 C -0.54 -27.81 8.37 25.60 0.21 -27.60 16 16 H 0.07 3.31 7.65 -2.91 -0.02 3.29 16 17 C 0.01 0.78 5.30 84.65 0.45 1.23 16 18 N -0.92 -51.90 11.32 21.44 0.24 -51.66 16 19 Si 0.97 41.28 29.54 68.60 2.03 43.30 16 20 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 23 C -0.02 -0.47 9.13 22.53 0.21 -0.27 16 24 C -0.06 -1.66 6.81 36.34 0.25 -1.41 16 25 N 0.04 1.13 4.45 -46.55 -0.21 0.92 16 26 O -0.21 -6.80 18.47 18.88 0.35 -6.45 16 27 O -0.13 -3.40 15.09 18.89 0.28 -3.11 16 28 H 0.07 0.52 7.93 -2.39 -0.02 0.50 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.14 2.41 3.78 -81.63 -0.31 2.10 16 32 H 0.08 0.45 6.95 -2.39 -0.02 0.43 16 33 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.20 0.89 7.07 -2.91 -0.02 0.87 16 36 H 0.18 2.65 5.21 -2.91 -0.02 2.64 16 37 H 0.08 1.74 6.78 -2.39 -0.02 1.72 16 38 H 0.09 1.77 5.92 -2.39 -0.01 1.76 16 39 H 0.08 2.18 6.44 -2.38 -0.02 2.17 16 40 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 41 H 0.05 2.22 6.66 -2.39 -0.02 2.20 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.14 4.64 7.61 -2.92 -0.02 4.62 16 Total: -1.00 -72.12 357.09 6.06 -66.06 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.74 Total: 10.81 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 4.98 Total: -3.53 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.25 Total: -76.25 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: 0.57 Total: -40.39 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -72.12 6.06 -66.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189707235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.480 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds