Wall clock time and date at job start Tue Mar 31 2020 13:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.51563 * 2 1 4 4 C 1.53294 * 109.51580 * 239.89717 * 2 1 3 5 5 N 1.47159 * 108.38420 * 187.72783 * 4 2 1 6 6 C 1.34776 * 120.97507 * 230.51318 * 5 4 2 7 7 O 1.21582 * 119.99690 * 184.64029 * 6 5 4 8 8 N 1.34771 * 120.00532 * 4.63378 * 6 5 4 9 9 C 1.39239 * 120.00356 * 185.85921 * 8 6 5 10 10 C 1.39482 * 119.83735 * 214.36808 * 9 8 6 11 11 C 1.36375 * 120.17211 * 180.26989 * 10 9 8 12 12 C 1.40874 * 119.82660 * 0.02945 * 11 10 9 13 13 C 1.41158 * 120.16330 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00107 * 173.00520 * 13 12 11 15 15 C 1.39892 * 119.99533 * 353.00419 * 13 12 11 16 16 N 1.30874 * 120.00514 * 322.02139 * 15 13 12 17 17 Si 1.86806 * 119.99556 * 142.02246 * 15 13 12 18 18 H 1.48506 * 109.46693 * 84.99915 * 17 15 13 19 19 H 1.48495 * 109.47100 * 204.99405 * 17 15 13 20 20 H 1.48500 * 109.47291 * 324.99963 * 17 15 13 21 21 C 1.40870 * 119.67370 * 359.97438 * 12 11 10 22 22 C 1.36379 * 119.82812 * 359.97438 * 21 12 11 23 23 C 1.47145 * 118.03630 * 50.78020 * 5 4 2 24 24 C 1.53705 * 108.16724 * 309.16271 * 23 5 4 25 25 H 1.09006 * 109.65422 * 292.57525 * 24 23 5 26 26 C 1.52999 * 109.48761 * 172.40052 * 24 23 5 27 27 O 1.42902 * 109.46940 * 175.36241 * 26 24 23 28 28 O 1.42963 * 109.14851 * 52.53560 * 24 23 5 29 29 H 1.08999 * 109.47085 * 180.10059 * 1 2 3 30 30 H 1.08994 * 109.47072 * 300.10263 * 1 2 3 31 31 H 1.09007 * 109.46918 * 60.10812 * 1 2 3 32 32 H 1.08998 * 109.68378 * 67.99976 * 4 2 1 33 33 H 1.09001 * 109.67938 * 307.44412 * 4 2 1 34 34 H 0.97002 * 120.00200 * 5.85750 * 8 6 5 35 35 H 1.07998 * 119.91025 * 0.28088 * 10 9 8 36 36 H 1.07996 * 120.08887 * 179.97438 * 11 10 9 37 37 H 0.97003 * 120.00109 * 180.02562 * 16 15 13 38 38 H 1.07995 * 120.08521 * 179.97438 * 21 12 11 39 39 H 1.07997 * 119.91912 * 179.97438 * 22 21 12 40 40 H 1.09006 * 109.67859 * 68.94521 * 23 5 4 41 41 H 1.09003 * 109.67969 * 189.48982 * 23 5 4 42 42 H 1.09002 * 109.47094 * 295.35981 * 26 24 23 43 43 H 1.09004 * 109.47314 * 55.36305 * 26 24 23 44 44 H 0.96706 * 113.99932 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2500 5 7 3.5015 -0.8747 -1.1343 6 6 4.3189 -0.5019 -2.1390 7 8 5.5139 -0.7110 -2.0597 8 7 3.8116 0.1024 -3.2316 9 6 4.6347 0.3774 -4.3205 10 6 4.4203 1.5278 -5.0795 11 6 5.2189 1.8009 -6.1507 12 6 6.2621 0.9172 -6.4903 13 6 7.0926 1.1927 -7.5980 14 1 7.9591 0.5772 -7.7896 15 6 6.7932 2.2631 -8.4475 16 7 5.5479 2.5341 -8.7448 17 14 8.1712 3.3055 -9.1576 18 1 8.6958 2.6607 -10.3882 19 1 7.6496 4.6555 -9.4900 20 1 9.2635 3.4288 -8.1592 21 6 6.4724 -0.2427 -5.7191 22 6 5.6662 -0.5018 -4.6500 23 6 4.0414 -1.4492 0.1081 24 6 3.4322 -0.6843 1.2940 25 1 3.8032 0.3407 1.2987 26 6 3.8232 -1.3752 2.6020 27 8 3.3484 -0.6049 3.7080 28 8 2.0084 -0.6761 1.1653 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3633 0.5154 0.8890 31 1 -0.3633 0.5122 -0.8910 32 1 1.8024 -0.1394 -2.1377 33 1 1.5766 -1.7077 -1.3210 34 1 2.8730 0.3459 -3.2595 35 1 3.6199 2.2041 -4.8180 36 1 5.0514 2.6918 -6.7377 37 1 5.3404 3.2761 -9.3342 38 1 7.2699 -0.9249 -5.9737 39 1 5.8259 -1.3909 -4.0580 40 1 3.7737 -2.5039 0.1714 41 1 5.1262 -1.3439 0.1201 42 1 3.3785 -2.3699 2.6344 43 1 4.9085 -1.4603 2.6577 44 1 3.5605 -0.9846 4.5717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191069891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:19 Heat of formation + Delta-G solvation = -87.328038 kcal Electronic energy + Delta-G solvation = -26796.189855 eV Core-core repulsion = 22906.912823 eV Total energy + Delta-G solvation = -3889.277032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.60816 -39.01149 -37.32803 -36.89012 -34.68755 -34.58909 -33.45709 -32.85493 -30.04623 -29.49200 -28.85635 -26.78964 -25.95748 -24.42233 -22.21162 -21.80463 -21.18132 -20.65456 -19.35841 -18.13602 -17.68043 -17.38355 -17.12450 -16.47129 -15.75927 -15.45388 -15.28258 -15.09022 -14.55175 -14.36446 -14.18632 -13.98622 -13.58944 -13.06284 -12.98187 -12.77128 -12.69948 -12.47630 -12.28355 -12.05414 -11.95061 -11.72754 -11.38497 -11.28870 -11.10302 -10.99368 -10.83790 -10.54046 -10.41347 -10.21907 -10.15409 -9.66613 -9.64063 -9.22130 -8.64782 -8.51864 -7.51702 -7.17844 -6.94705 -4.22818 2.61641 2.75079 3.00440 3.03224 3.14644 3.19582 3.31834 3.62556 3.85260 3.87998 4.19741 4.44926 4.51047 4.63596 4.78025 4.82584 4.93401 4.96064 5.09414 5.17072 5.26011 5.37512 5.44118 5.61368 5.64521 5.72128 5.75489 5.89668 6.21076 6.32173 6.44374 6.81413 6.81968 6.95575 6.96628 7.10137 7.28528 7.32017 7.35430 7.59949 7.87235 7.98677 8.05859 8.25730 8.45066 8.56823 8.85312 8.91278 9.10773 9.91442 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026335 B = 0.002528 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.948837 B =11071.605245 C =11577.914414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.064 0.936 4 C 0.083 3.917 5 N -0.639 5.639 6 C 0.700 3.300 7 O -0.575 6.575 8 N -0.662 5.662 9 C -0.012 4.012 10 C -0.101 4.101 11 C -0.186 4.186 12 C 0.105 3.895 13 C -0.460 4.460 14 H 0.082 0.918 15 C 0.090 3.910 16 N -0.757 5.757 17 Si 0.896 3.104 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.257 1.257 21 C -0.230 4.230 22 C -0.064 4.064 23 C 0.107 3.893 24 C 0.078 3.922 25 H 0.070 0.930 26 C 0.087 3.913 27 O -0.566 6.566 28 O -0.366 6.366 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.388 0.612 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.284 0.716 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 -4.364 16.496 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 H 0.082 0.918 4 C -0.041 4.041 5 N -0.378 5.378 6 C 0.402 3.598 7 O -0.452 6.452 8 N -0.309 5.309 9 C -0.104 4.104 10 C -0.122 4.122 11 C -0.206 4.206 12 C 0.102 3.898 13 C -0.486 4.486 14 H 0.100 0.900 15 C -0.133 4.133 16 N -0.379 5.379 17 Si 0.719 3.281 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.180 1.180 21 C -0.250 4.250 22 C -0.084 4.084 23 C -0.017 4.017 24 C 0.019 3.981 25 H 0.088 0.912 26 C 0.009 3.991 27 O -0.371 6.371 28 O -0.285 6.285 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.224 0.776 35 H 0.105 0.895 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.797 -4.103 16.016 18.728 hybrid contribution 0.345 0.387 -0.155 0.541 sum -8.453 -3.715 15.861 18.353 Atomic orbital electron populations 1.21727 0.92115 1.03233 1.02948 1.22484 0.95522 0.95529 0.84985 0.91849 1.22369 0.81091 1.01730 0.98910 1.47241 1.05638 1.68129 1.16829 1.15859 0.84821 0.79468 0.79643 1.90904 1.13177 1.61358 1.79775 1.42225 1.11935 1.62083 1.14647 1.16848 1.00838 0.99539 0.93197 1.20115 1.00180 0.94489 0.97405 1.20875 0.99047 1.01710 0.98958 1.17577 0.90646 0.89854 0.91725 1.19530 1.09950 1.11504 1.07665 0.89958 1.26033 0.95965 0.97074 0.94246 1.69988 1.20438 1.23752 1.23732 0.86524 0.82619 0.79144 0.79787 1.19152 1.19961 1.18040 1.20461 1.04012 0.99997 1.00520 1.20195 0.95201 0.97143 0.95835 1.21993 1.00891 0.96812 0.81980 1.22578 0.82207 1.00028 0.93276 0.91180 1.22066 0.97783 0.94130 0.85139 1.86535 1.81783 1.52220 1.16547 1.87982 1.20193 1.77298 1.43074 0.91537 0.91372 0.90641 0.89417 0.90528 0.77638 0.89515 0.86184 0.90469 0.88914 0.88314 0.90958 0.87703 0.92475 0.91631 0.77352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.57 37.16 0.36 -0.76 16 2 C 0.07 0.76 3.40 -26.58 -0.09 0.67 16 3 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.08 0.91 5.93 -3.53 -0.02 0.89 16 5 N -0.64 -9.14 3.01 -177.75 -0.54 -9.67 16 6 C 0.70 13.18 8.02 -86.92 -0.70 12.48 16 7 O -0.58 -13.08 13.59 5.29 0.07 -13.01 16 8 N -0.66 -12.40 5.21 -14.10 -0.07 -12.47 16 9 C -0.01 -0.28 6.26 -83.57 -0.52 -0.80 16 10 C -0.10 -2.38 9.90 -39.79 -0.39 -2.77 16 11 C -0.19 -4.83 8.88 -39.26 -0.35 -5.18 16 12 C 0.10 2.84 5.70 -106.80 -0.61 2.23 16 13 C -0.46 -12.17 8.94 -37.86 -0.34 -12.51 16 14 H 0.08 2.11 8.05 -52.49 -0.42 1.69 16 15 C 0.09 2.21 4.84 -17.34 -0.08 2.13 16 16 N -0.76 -18.77 11.23 55.54 0.62 -18.14 16 17 Si 0.90 18.08 29.68 -169.99 -5.05 13.04 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 21 C -0.23 -5.96 9.74 -39.26 -0.38 -6.35 16 22 C -0.06 -1.58 8.57 -39.79 -0.34 -1.92 16 23 C 0.11 1.32 5.94 -3.32 -0.02 1.30 16 24 C 0.08 0.89 3.07 -26.37 -0.08 0.80 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 C 0.09 0.76 6.72 37.16 0.25 1.01 16 27 O -0.57 -5.37 13.63 -39.98 -0.54 -5.91 16 28 O -0.37 -4.40 9.99 -39.98 -0.40 -4.80 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.87 5.65 -51.93 -0.29 0.57 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 5.89 6.35 -40.82 -0.26 5.63 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.12 3.15 5.76 -52.49 -0.30 2.85 16 37 H 0.28 6.29 8.30 -40.82 -0.34 5.96 16 38 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.10 2.44 6.49 -52.49 -0.34 2.10 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.10 1.40 7.11 -51.93 -0.37 1.04 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.38 1.65 9.12 45.56 0.42 2.07 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -33.00 359.37 -9.17 -42.16 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.36 Total: 12.16 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -3.32 Total: -8.78 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.01 Total: -40.28 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.87 Total: -23.71 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.05 Total: 13.04 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.00 -9.17 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191069891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.163 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds