Wall clock time and date at job start Tue Mar 31 2020 13:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 N 1.46495 * 109.47360 * 179.97438 * 15 13 12 17 17 C 1.46503 * 119.99699 * 90.00038 * 16 15 13 18 18 C 1.34776 * 120.00282 * 270.00146 * 16 15 13 19 19 O 1.21504 * 119.99771 * 359.97438 * 18 16 15 20 20 O 1.34633 * 119.99879 * 179.97438 * 18 16 15 21 21 C 1.45202 * 116.99831 * 179.97438 * 20 18 16 22 22 C 1.50704 * 109.47118 * 179.97438 * 21 20 18 23 23 C 1.38233 * 120.00399 * 269.73100 * 22 21 20 24 24 C 1.38233 * 120.00215 * 179.76661 * 23 22 21 25 25 C 1.38242 * 119.99771 * 0.50507 * 24 23 22 26 26 C 1.38237 * 119.99809 * 359.74855 * 25 24 23 27 27 C 1.38234 * 120.00333 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 29 29 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 30 30 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 31 31 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 32 32 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 33 33 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 34 34 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 35 35 H 1.09005 * 109.46986 * 90.00367 * 17 16 15 36 36 H 1.09002 * 109.47018 * 209.99604 * 17 16 15 37 37 H 1.08998 * 109.47129 * 330.00106 * 17 16 15 38 38 H 1.08998 * 109.47286 * 300.00376 * 21 20 18 39 39 H 1.09003 * 109.46532 * 60.00658 * 21 20 18 40 40 H 1.08001 * 119.99675 * 0.02562 * 23 22 21 41 41 H 1.07999 * 120.00356 * 180.22886 * 24 23 22 42 42 H 1.07997 * 119.99879 * 179.71836 * 25 24 23 43 43 H 1.08001 * 119.99866 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00356 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 7 2.6987 0.2126 -4.7090 17 6 3.9146 0.9904 -4.9602 18 6 1.6251 0.3630 -5.5098 19 8 0.6169 -0.2825 -5.3017 20 8 1.6698 1.2283 -6.5402 21 6 0.4771 1.3381 -7.3609 22 6 0.7118 2.3468 -8.4558 23 6 0.4037 3.6781 -8.2469 24 6 0.6235 4.6040 -9.2495 25 6 1.1417 4.1969 -10.4647 26 6 1.4449 2.8648 -10.6754 27 6 1.2295 1.9396 -9.6712 28 1 -0.3632 0.6107 -0.8266 29 1 -0.3633 -1.0211 -0.1156 30 1 -0.3633 0.4106 0.9420 31 1 2.1697 -1.8615 3.4635 32 1 2.2490 -1.6319 -1.1526 33 1 3.6493 -1.1205 -3.3979 34 1 1.9778 -1.5508 -3.8325 35 1 4.5677 0.4361 -5.6343 36 1 3.6481 1.9443 -5.4154 37 1 4.4325 1.1694 -4.0180 38 1 0.2494 0.3681 -7.8027 39 1 -0.3606 1.6616 -6.7429 40 1 -0.0049 3.9954 -7.2988 41 1 0.3862 5.6447 -9.0850 42 1 1.3092 4.9196 -11.2496 43 1 1.8494 2.5467 -11.6250 44 1 1.4660 0.8988 -9.8360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191201346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:10 Heat of formation + Delta-G solvation = -83.970574 kcal Electronic energy + Delta-G solvation = -26276.794368 eV Core-core repulsion = 22387.662927 eV Total energy + Delta-G solvation = -3889.131441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68460 -39.56339 -38.91022 -36.75764 -35.54373 -34.78522 -32.50234 -32.40222 -31.26397 -30.26055 -28.24343 -27.16746 -25.83067 -24.78490 -22.94389 -22.02824 -21.45516 -20.37440 -19.57428 -18.18335 -17.87433 -17.47834 -16.94798 -16.73543 -16.18931 -15.57649 -15.45210 -15.21700 -14.59325 -14.46668 -14.01924 -13.76078 -13.72409 -13.45639 -13.19465 -12.87635 -12.77467 -12.66442 -12.56778 -12.44668 -12.26863 -11.88190 -11.56195 -11.45169 -11.43844 -11.30036 -10.73011 -10.54877 -10.53604 -10.12029 -9.73166 -9.57861 -9.27417 -9.23759 -9.02505 -8.64559 -8.41478 -8.16014 -6.56964 -4.22254 0.79715 1.05108 2.10698 2.82734 3.19983 3.38199 3.41225 3.45499 3.60349 3.84238 4.07169 4.43572 4.43974 4.46809 4.65337 4.77031 4.92446 5.03247 5.11166 5.13014 5.17809 5.20073 5.29231 5.29876 5.37657 5.47677 5.58916 5.68259 5.73055 6.05991 6.14279 6.15676 6.22040 6.24634 6.41850 6.57560 6.60834 6.70303 6.97805 7.23286 7.30449 7.38914 7.65805 8.22866 8.25284 8.46292 8.69840 8.95880 9.46315 10.82302 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.002409 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.220593 B =11620.073670 C =12116.121616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.243 3.757 3 H 0.042 0.958 4 C -0.616 4.616 5 H 0.062 0.938 6 C 0.040 3.960 7 N -0.899 5.899 8 Si 1.039 2.961 9 H -0.284 1.284 10 H -0.267 1.267 11 H -0.284 1.284 12 N -0.701 5.701 13 C 0.484 3.516 14 O -0.547 6.547 15 C 0.110 3.890 16 N -0.578 5.578 17 C 0.089 3.911 18 C 0.656 3.344 19 O -0.570 6.570 20 O -0.361 6.361 21 C 0.128 3.872 22 C -0.096 4.096 23 C -0.092 4.092 24 C -0.124 4.124 25 C -0.111 4.111 26 C -0.125 4.125 27 C -0.094 4.094 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.269 0.731 32 H 0.393 0.607 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 5.291 -27.813 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.139 3.861 3 H 0.059 0.941 4 C -0.654 4.654 5 H 0.080 0.920 6 C -0.167 4.167 7 N -0.532 5.532 8 Si 0.866 3.134 9 H -0.211 1.211 10 H -0.192 1.192 11 H -0.210 1.210 12 N -0.350 5.350 13 C 0.268 3.732 14 O -0.425 6.425 15 C -0.016 4.016 16 N -0.317 5.317 17 C -0.054 4.054 18 C 0.410 3.590 19 O -0.458 6.458 20 O -0.275 6.275 21 C 0.053 3.947 22 C -0.096 4.096 23 C -0.110 4.110 24 C -0.142 4.142 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.112 4.112 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.226 0.774 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.843 7.136 -26.702 27.652 hybrid contribution 0.466 -1.736 -0.960 2.038 sum 1.309 5.401 -27.662 28.215 Atomic orbital electron populations 1.22434 0.98960 0.99951 0.99923 1.19050 0.90507 0.94175 0.82324 0.94063 1.22095 1.41095 1.11161 0.91000 0.91980 1.25677 0.93912 1.05448 0.91646 1.70826 1.43407 1.08300 1.30676 0.84180 0.77544 0.75349 0.76354 1.21067 1.19247 1.20964 1.46251 1.65131 1.13722 1.09865 1.20937 0.79148 0.88074 0.85083 1.90655 1.50902 1.16043 1.84923 1.21408 1.04229 0.91743 0.84173 1.46011 1.13128 1.44208 1.28322 1.21771 0.85587 0.95931 1.02089 1.17877 0.83132 0.78786 0.79165 1.90996 1.30934 1.49809 1.74072 1.86278 1.41926 1.59194 1.40120 1.21699 0.85198 0.98379 0.89386 1.19557 1.01681 0.94132 0.94256 1.21177 0.98324 0.92243 0.99270 1.21189 0.99736 0.99704 0.93535 1.21250 0.98241 0.96091 0.97297 1.21158 1.00643 0.93344 0.99199 1.21108 0.97270 1.00009 0.92821 0.95199 0.93757 0.92501 0.92058 0.77370 0.87012 0.86897 0.92437 0.90380 0.90607 0.90232 0.90114 0.85549 0.85666 0.85884 0.85760 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.76 37.16 0.33 -3.30 16 2 C 0.24 5.92 2.11 -69.08 -0.15 5.78 16 3 H 0.04 1.09 6.21 -51.93 -0.32 0.77 16 4 C -0.62 -16.64 9.02 -34.44 -0.31 -16.96 16 5 H 0.06 1.74 7.96 -52.48 -0.42 1.32 16 6 C 0.04 1.12 5.33 -17.82 -0.09 1.02 16 7 N -0.90 -26.82 13.69 55.43 0.76 -26.06 16 8 Si 1.04 25.25 26.17 -169.99 -4.45 20.81 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.27 -6.22 5.53 56.52 0.31 -5.91 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.70 -14.19 5.07 -54.93 -0.28 -14.47 16 13 C 0.48 9.36 7.86 -10.99 -0.09 9.27 16 14 O -0.55 -12.73 16.09 5.56 0.09 -12.64 16 15 C 0.11 1.55 5.89 -5.20 -0.03 1.52 16 16 N -0.58 -8.34 2.36 -188.81 -0.45 -8.78 16 17 C 0.09 0.99 10.44 59.85 0.63 1.61 16 18 C 0.66 10.58 8.39 54.06 0.45 11.03 16 19 O -0.57 -10.73 15.71 -19.27 -0.30 -11.04 16 20 O -0.36 -5.00 9.03 -40.31 -0.36 -5.36 16 21 C 0.13 1.47 5.60 36.01 0.20 1.67 16 22 C -0.10 -0.96 5.52 -104.62 -0.58 -1.53 16 23 C -0.09 -0.86 9.70 -39.59 -0.38 -1.25 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.11 -0.79 10.05 -39.58 -0.40 -1.19 16 26 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 27 C -0.09 -0.80 9.70 -39.58 -0.38 -1.18 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.34 5.06 -51.93 -0.26 1.08 16 31 H 0.27 7.93 8.73 -40.82 -0.36 7.58 16 32 H 0.39 6.88 8.53 -40.82 -0.35 6.54 16 33 H 0.11 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.11 1.53 7.42 -51.93 -0.39 1.14 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.89 7.37 -51.93 -0.38 0.50 16 37 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -35.64 374.64 -7.37 -43.00 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.42 Total: 5.09 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.60 Total: 3.80 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.03 Total: -49.31 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.58 Total: -29.04 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -4.45 Total: 20.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.64 -7.37 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191201346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.966 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds