Wall clock time and date at job start Tue Mar 31 2020 13:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 N 1.46495 * 109.47360 * 179.97438 * 15 13 12 17 17 C 1.46503 * 119.99699 * 90.00038 * 16 15 13 18 18 C 1.34776 * 120.00282 * 270.00146 * 16 15 13 19 19 O 1.21504 * 119.99771 * 359.97438 * 18 16 15 20 20 O 1.34633 * 119.99879 * 179.97438 * 18 16 15 21 21 C 1.45202 * 116.99831 * 179.97438 * 20 18 16 22 22 C 1.50704 * 109.47118 * 179.97438 * 21 20 18 23 23 C 1.38233 * 120.00399 * 269.73100 * 22 21 20 24 24 C 1.38233 * 120.00215 * 179.76661 * 23 22 21 25 25 C 1.38242 * 119.99771 * 0.50507 * 24 23 22 26 26 C 1.38237 * 119.99809 * 359.74855 * 25 24 23 27 27 C 1.38234 * 120.00333 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 29 29 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 30 30 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 31 31 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 32 32 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 33 33 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 34 34 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 35 35 H 1.09005 * 109.46986 * 90.00367 * 17 16 15 36 36 H 1.09002 * 109.47018 * 209.99604 * 17 16 15 37 37 H 1.08998 * 109.47129 * 330.00106 * 17 16 15 38 38 H 1.08998 * 109.47286 * 300.00376 * 21 20 18 39 39 H 1.09003 * 109.46532 * 60.00658 * 21 20 18 40 40 H 1.08001 * 119.99675 * 0.02562 * 23 22 21 41 41 H 1.07999 * 120.00356 * 180.22886 * 24 23 22 42 42 H 1.07997 * 119.99879 * 179.71836 * 25 24 23 43 43 H 1.08001 * 119.99866 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00356 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 7 2.6987 0.2126 -4.7090 17 6 3.9146 0.9904 -4.9602 18 6 1.6251 0.3630 -5.5098 19 8 0.6169 -0.2825 -5.3017 20 8 1.6698 1.2283 -6.5402 21 6 0.4771 1.3381 -7.3609 22 6 0.7118 2.3468 -8.4558 23 6 0.4037 3.6781 -8.2469 24 6 0.6235 4.6040 -9.2495 25 6 1.1417 4.1969 -10.4647 26 6 1.4449 2.8648 -10.6754 27 6 1.2295 1.9396 -9.6712 28 1 -0.3632 0.6107 -0.8266 29 1 -0.3633 -1.0211 -0.1156 30 1 -0.3633 0.4106 0.9420 31 1 2.1697 -1.8615 3.4635 32 1 2.2490 -1.6319 -1.1526 33 1 3.6493 -1.1205 -3.3979 34 1 1.9778 -1.5508 -3.8325 35 1 4.5677 0.4361 -5.6343 36 1 3.6481 1.9443 -5.4154 37 1 4.4325 1.1694 -4.0180 38 1 0.2494 0.3681 -7.8027 39 1 -0.3606 1.6616 -6.7429 40 1 -0.0049 3.9954 -7.2988 41 1 0.3862 5.6447 -9.0850 42 1 1.3092 4.9196 -11.2496 43 1 1.8494 2.5467 -11.6250 44 1 1.4660 0.8988 -9.8360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191201346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:09 Heat of formation + Delta-G solvation = -107.656091 kcal Electronic energy + Delta-G solvation = -26277.821449 eV Core-core repulsion = 22387.662927 eV Total energy + Delta-G solvation = -3890.158523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.84820 -40.64346 -40.04069 -37.90973 -36.96678 -36.42583 -34.48644 -33.16975 -31.99522 -31.86190 -29.52423 -28.05528 -26.95767 -26.72011 -23.54845 -23.42536 -22.34050 -21.80201 -21.23746 -19.86042 -19.22443 -18.45740 -18.37193 -17.57919 -17.45275 -17.11538 -16.24586 -16.08086 -15.98536 -15.83358 -15.40658 -14.97876 -14.69358 -14.56649 -14.40043 -14.32671 -14.17541 -13.91712 -13.76803 -13.62821 -13.38823 -13.35708 -13.30778 -12.86142 -12.50510 -12.12928 -12.10089 -12.08594 -11.77059 -11.72627 -11.56149 -11.15708 -11.11233 -10.57333 -9.92928 -9.90137 -9.88333 -9.87724 -8.79240 -6.45189 0.10015 0.44324 1.08679 1.46729 1.48431 1.60588 1.69202 1.69996 2.41872 2.45133 2.70651 3.00084 3.03814 3.65402 3.76594 3.85978 4.02553 4.11106 4.19472 4.20093 4.23975 4.27143 4.31833 4.46745 4.57412 4.65720 4.66869 4.67841 4.75859 4.88450 4.97344 5.03434 5.09738 5.12137 5.17528 5.39015 5.49207 5.55707 5.56792 5.60841 5.63927 6.01132 6.02369 6.10190 6.52178 6.78874 7.08037 7.26592 7.40251 8.59267 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.002409 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.220593 B =11620.073670 C =12116.121616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.246 3.754 3 H 0.023 0.977 4 C -0.608 4.608 5 H 0.046 0.954 6 C -0.005 4.005 7 N -0.928 5.928 8 Si 1.072 2.928 9 H -0.274 1.274 10 H -0.255 1.255 11 H -0.279 1.279 12 N -0.701 5.701 13 C 0.482 3.518 14 O -0.589 6.589 15 C 0.119 3.881 16 N -0.579 5.579 17 C 0.086 3.914 18 C 0.649 3.351 19 O -0.605 6.605 20 O -0.359 6.359 21 C 0.126 3.874 22 C -0.114 4.114 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.110 4.110 26 C -0.126 4.126 27 C -0.101 4.101 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.260 0.740 32 H 0.407 0.593 33 H 0.160 0.840 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 5.913 -30.335 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.141 3.859 3 H 0.041 0.959 4 C -0.646 4.646 5 H 0.064 0.936 6 C -0.206 4.206 7 N -0.563 5.563 8 Si 0.895 3.105 9 H -0.200 1.200 10 H -0.180 1.180 11 H -0.205 1.205 12 N -0.350 5.350 13 C 0.267 3.733 14 O -0.470 6.470 15 C -0.007 4.007 16 N -0.317 5.317 17 C -0.056 4.056 18 C 0.404 3.596 19 O -0.496 6.496 20 O -0.273 6.273 21 C 0.052 3.948 22 C -0.114 4.114 23 C -0.129 4.129 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.144 4.144 27 C -0.119 4.119 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.243 0.757 33 H 0.178 0.822 34 H 0.140 0.860 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.168 0.832 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.829 7.742 -29.261 30.323 hybrid contribution 0.205 -1.927 -0.280 1.958 sum 2.033 5.815 -29.541 30.176 Atomic orbital electron populations 1.22345 0.98252 1.00416 0.99702 1.18738 0.90960 0.93192 0.83032 0.95889 1.22233 1.39934 1.10370 0.92106 0.93597 1.26774 0.93874 1.08145 0.91787 1.70921 1.45768 1.08042 1.31555 0.83724 0.77868 0.72011 0.76924 1.20030 1.17956 1.20502 1.46078 1.65302 1.14384 1.09282 1.21860 0.77824 0.87659 0.85916 1.90635 1.52572 1.18146 1.85660 1.21511 1.06771 0.90977 0.81391 1.46249 1.13536 1.44309 1.27646 1.21976 0.84686 0.95917 1.02995 1.18175 0.83104 0.78697 0.79647 1.90961 1.32346 1.51232 1.75099 1.86298 1.42900 1.58364 1.39699 1.21833 0.84190 0.99357 0.89380 1.19529 1.03485 0.93983 0.94407 1.21291 0.99175 0.92595 0.99835 1.21456 0.99467 1.00324 0.93516 1.21632 0.96928 0.96707 0.97493 1.21506 0.99873 0.93226 0.99805 1.21313 0.97044 1.01044 0.92531 0.95269 0.92969 0.92823 0.93068 0.75734 0.82234 0.85977 0.89079 0.91060 0.90295 0.89584 0.91444 0.86119 0.83930 0.83211 0.83198 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.89 8.76 71.98 0.63 -6.26 16 2 C 0.25 11.85 2.11 44.25 0.09 11.94 16 3 H 0.02 1.21 6.21 -2.39 -0.01 1.20 16 4 C -0.61 -32.86 9.02 25.60 0.23 -32.63 16 5 H 0.05 2.58 7.96 -2.91 -0.02 2.56 16 6 C 0.00 -0.28 5.33 84.65 0.45 0.17 16 7 N -0.93 -55.85 13.69 21.44 0.29 -55.56 16 8 Si 1.07 50.72 26.17 68.60 1.80 52.51 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.26 -11.47 5.53 99.48 0.55 -10.92 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 N -0.70 -27.59 5.07 -446.10 -2.26 -29.86 16 13 C 0.48 18.01 7.86 87.66 0.69 18.70 16 14 O -0.59 -27.21 16.09 -3.03 -0.05 -27.26 16 15 C 0.12 3.06 5.89 85.63 0.50 3.57 16 16 N -0.58 -15.71 2.36 -981.67 -2.32 -18.03 16 17 C 0.09 1.71 10.44 127.77 1.33 3.04 16 18 C 0.65 20.60 8.39 129.79 1.09 21.69 16 19 O -0.60 -22.85 15.71 19.83 0.31 -22.53 16 20 O -0.36 -9.88 9.03 -55.42 -0.50 -10.38 16 21 C 0.13 2.97 5.60 71.24 0.40 3.37 16 22 C -0.11 -2.25 5.52 -19.86 -0.11 -2.36 16 23 C -0.11 -2.07 9.70 22.27 0.22 -1.86 16 24 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 25 C -0.11 -1.29 10.05 22.27 0.22 -1.07 16 26 C -0.13 -1.54 10.05 22.27 0.22 -1.31 16 27 C -0.10 -1.59 9.70 22.27 0.22 -1.37 16 28 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.48 5.06 -2.39 -0.01 2.47 16 31 H 0.26 15.61 8.73 -92.71 -0.81 14.80 16 32 H 0.41 13.66 8.53 -92.71 -0.79 12.87 16 33 H 0.16 2.60 8.07 -2.39 -0.02 2.58 16 34 H 0.12 3.02 7.42 -2.39 -0.02 3.00 16 35 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.07 1.52 7.37 -2.39 -0.02 1.51 16 37 H 0.08 1.54 8.07 -2.39 -0.02 1.52 16 38 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 39 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 40 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 43 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 44 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -77.72 374.64 3.71 -74.00 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.03 Total: 23.11 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 6.42 Total: 13.98 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -4.29 Total: -103.44 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: -0.24 Total: -60.17 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 1.80 Total: 52.51 kcal Total: -77.72 3.71 -74.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191201346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.653 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds