Wall clock time and date at job start Tue Mar 31 2020 12:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47288 * 2 1 4 4 O 1.42891 * 109.47145 * 180.02562 * 3 2 1 5 5 C 1.35429 * 117.00015 * 179.97438 * 4 3 2 6 6 N 1.32238 * 119.79999 * 0.26756 * 5 4 3 7 7 C 1.31873 * 121.80301 * 180.26408 * 6 5 4 8 8 C 1.50698 * 119.41094 * 179.72929 * 7 6 5 9 9 C 1.38362 * 121.18557 * 359.75205 * 7 6 5 10 10 C 1.38341 * 119.45423 * 359.97438 * 9 7 6 11 11 C 1.39982 * 118.34888 * 359.97438 * 10 9 7 12 12 C 1.47528 * 120.59685 * 180.02562 * 11 10 9 13 13 O 1.21587 * 120.00187 * 155.49891 * 12 11 10 14 14 N 1.34781 * 119.99432 * 335.49820 * 12 11 10 15 15 C 1.47586 * 134.48663 * 174.59714 * 14 12 11 16 16 C 1.53944 * 86.11439 * 155.35976 * 15 14 12 17 17 O 1.42903 * 113.74269 * 269.15228 * 16 15 14 18 18 C 1.50702 * 113.74483 * 137.95126 * 16 15 14 19 19 H 1.07996 * 119.99650 * 1.92680 * 18 16 15 20 20 C 1.37871 * 120.00254 * 181.92209 * 18 16 15 21 21 N 1.31517 * 120.00340 * 180.02562 * 20 18 16 22 22 Si 1.86807 * 119.99865 * 0.02562 * 20 18 16 23 23 H 1.48494 * 109.46964 * 269.99465 * 22 20 18 24 24 H 1.48496 * 109.47063 * 30.00001 * 22 20 18 25 25 H 1.48501 * 109.47055 * 149.99949 * 22 20 18 26 26 C 1.47812 * 134.46240 * 354.46693 * 14 12 11 27 27 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47160 * 300.00596 * 1 2 3 29 29 H 1.09003 * 109.47083 * 60.00476 * 1 2 3 30 30 H 1.08999 * 109.47491 * 239.99832 * 2 1 3 31 31 H 1.09003 * 109.47083 * 119.99524 * 2 1 3 32 32 H 1.08999 * 109.46992 * 59.99526 * 3 2 1 33 33 H 1.09003 * 109.46670 * 299.99776 * 3 2 1 34 34 H 1.09001 * 109.46690 * 270.02204 * 8 7 6 35 35 H 1.08995 * 109.47275 * 30.02369 * 8 7 6 36 36 H 1.08996 * 109.47698 * 150.02392 * 8 7 6 37 37 H 1.07997 * 120.27427 * 179.97438 * 9 7 6 38 38 H 1.07998 * 120.82040 * 180.02562 * 10 9 7 39 39 H 1.08997 * 113.77481 * 41.05874 * 15 14 12 40 40 H 1.08996 * 113.87077 * 269.67023 * 15 14 12 41 41 H 0.96694 * 114.00441 * 178.07679 * 17 16 15 42 42 H 0.96998 * 120.00383 * 180.02562 * 21 20 18 43 43 H 1.08992 * 113.77322 * 90.37654 * 26 14 12 44 44 H 1.09004 * 113.82986 * 318.91465 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0838 2.6492 -0.0012 6 7 3.3598 3.7557 0.0041 7 6 3.9170 4.9509 -0.0014 8 6 3.0399 6.1764 -0.0011 9 6 5.2926 5.1000 -0.0080 10 6 6.0987 3.9758 -0.0083 11 6 5.4849 2.7178 -0.0012 12 6 6.2969 1.4860 -0.0006 13 8 5.8335 0.4526 0.4417 14 7 7.5524 1.5064 -0.4904 15 6 8.6530 0.5254 -0.5558 16 6 9.1581 1.3297 -1.7674 17 8 8.6455 0.8678 -3.0188 18 6 10.6515 1.5307 -1.7824 19 1 11.2625 1.0973 -1.0045 20 6 11.2379 2.2677 -2.7893 21 7 12.5413 2.4427 -2.8028 22 14 10.1809 3.0179 -4.1346 23 1 10.0491 2.0536 -5.2561 24 1 8.8352 3.3309 -3.5901 25 1 10.8181 4.2656 -4.6269 26 6 8.3785 2.5200 -1.1796 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.8239 6.4688 -1.0287 35 1 2.1071 5.9554 0.5176 36 1 3.5544 6.9913 0.5080 37 1 5.7333 6.0860 -0.0129 38 1 7.1748 4.0666 -0.0129 39 1 8.3272 -0.4847 -0.8040 40 1 9.3237 0.5569 0.3029 41 1 8.9370 1.3885 -3.7796 42 1 12.9537 2.9616 -3.5110 43 1 8.9673 3.1403 -0.5040 44 1 7.8336 3.0994 -1.9250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193984506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:54 Heat of formation + Delta-G solvation = -40.587832 kcal Electronic energy + Delta-G solvation = -27379.706328 eV Core-core repulsion = 23492.456103 eV Total energy + Delta-G solvation = -3887.250225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92636 -39.53878 -38.23884 -37.42071 -34.49366 -34.12454 -33.10530 -32.57151 -31.66839 -29.18306 -28.01476 -26.61090 -25.68134 -25.24696 -23.02239 -22.92357 -21.55617 -20.33992 -19.10639 -18.20800 -17.51242 -16.87009 -16.82569 -16.49508 -16.19227 -15.42094 -14.97224 -14.65418 -14.58550 -14.44461 -13.90336 -13.82875 -13.61604 -13.33655 -13.10942 -13.00325 -12.62979 -12.51987 -12.40285 -12.33306 -12.22767 -12.20597 -12.06294 -11.44762 -11.28335 -11.17371 -10.97483 -10.65831 -10.63708 -10.15559 -10.02898 -9.90476 -9.63975 -9.30695 -9.02323 -8.69171 -8.46966 -7.99310 -6.44911 -4.51273 0.72738 1.21992 2.93078 2.96908 2.99599 3.11672 3.13344 3.33040 3.85225 3.99976 4.00457 4.58230 4.61999 4.74438 4.77662 4.79737 4.89051 5.02345 5.07381 5.19914 5.26525 5.30241 5.32806 5.33573 5.45695 5.48696 5.56045 5.70942 5.78104 5.83729 5.94329 5.97858 6.02993 6.04830 6.07074 6.17167 6.31625 6.35489 6.48200 6.57762 7.17780 7.26437 7.72162 8.00824 8.26637 8.49834 8.59278 8.65666 9.12625 10.67178 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.003831 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.818631 B = 7306.463439 C = 8330.041406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.067 3.933 4 O -0.273 6.273 5 C 0.375 3.625 6 N -0.548 5.548 7 C 0.183 3.817 8 C -0.105 4.105 9 C -0.221 4.221 10 C -0.007 4.007 11 C -0.201 4.201 12 C 0.581 3.419 13 O -0.535 6.535 14 N -0.631 5.631 15 C 0.130 3.870 16 C 0.196 3.804 17 O -0.552 6.552 18 C -0.536 4.536 19 H 0.092 0.908 20 C 0.081 3.919 21 N -0.876 5.876 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.256 1.256 25 H -0.283 1.283 26 C 0.057 3.943 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.151 0.849 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.352 0.648 42 H 0.271 0.729 43 H 0.096 0.904 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.410 7.014 4.397 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.008 4.008 4 O -0.178 6.178 5 C 0.195 3.805 6 N -0.274 5.274 7 C 0.045 3.955 8 C -0.163 4.163 9 C -0.241 4.241 10 C -0.033 4.033 11 C -0.207 4.207 12 C 0.370 3.630 13 O -0.414 6.414 14 N -0.366 5.366 15 C 0.009 3.991 16 C 0.155 3.845 17 O -0.363 6.363 18 C -0.574 4.574 19 H 0.110 0.890 20 C -0.124 4.124 21 N -0.511 5.511 22 Si 0.684 3.316 23 H -0.193 1.193 24 H -0.181 1.181 25 H -0.209 1.209 26 C -0.066 4.066 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.203 0.797 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.773 5.716 5.003 21.182 hybrid contribution 0.646 1.250 -1.184 1.839 sum -19.127 6.966 3.819 20.711 Atomic orbital electron populations 1.21663 0.94353 1.02282 1.02035 1.21513 0.95763 0.95060 1.04017 1.22737 0.77803 0.98112 1.02153 1.86472 1.22128 1.23331 1.85873 1.19690 0.87955 0.84701 0.88202 1.67232 1.40270 0.98179 1.21673 1.21112 0.92136 0.91914 0.90296 1.20781 0.99243 0.92824 1.03405 1.21737 0.93789 0.99929 1.08635 1.21914 1.01379 0.90319 0.89657 1.20044 0.91389 0.95430 1.13813 1.17350 0.80445 0.87293 0.77869 1.90765 1.70800 1.32169 1.47620 1.50012 1.10682 1.18427 1.57442 1.23279 0.84331 0.94401 0.97121 1.20547 0.92489 0.89347 0.82088 1.86484 1.75118 1.58714 1.15934 1.21232 0.88913 1.34346 1.12876 0.89003 1.24996 0.94946 0.95183 0.97322 1.69854 1.09199 1.38771 1.33304 0.87383 0.81142 0.79827 0.83266 1.19284 1.18101 1.20905 1.24760 0.91117 0.95529 0.95157 0.91839 0.92480 0.92483 0.90816 0.90687 0.91716 0.91812 0.89957 0.90363 0.90193 0.83995 0.83179 0.90453 0.88605 0.79671 0.91876 0.88616 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.41 6.30 -26.73 -0.17 -1.58 16 3 C 0.07 0.89 5.31 37.16 0.20 1.08 16 4 O -0.27 -4.83 8.51 -38.02 -0.32 -5.16 16 5 C 0.37 6.49 7.48 -16.61 -0.12 6.36 16 6 N -0.55 -8.10 9.11 -9.21 -0.08 -8.18 16 7 C 0.18 2.23 6.78 -82.53 -0.56 1.67 16 8 C -0.11 -0.83 10.16 36.00 0.37 -0.47 16 9 C -0.22 -2.63 9.71 -39.50 -0.38 -3.02 16 10 C -0.01 -0.11 8.95 -38.89 -0.35 -0.45 16 11 C -0.20 -3.60 5.84 -104.69 -0.61 -4.21 16 12 C 0.58 12.19 7.77 -12.47 -0.10 12.09 16 13 O -0.54 -12.65 16.33 -14.75 -0.24 -12.89 16 14 N -0.63 -12.93 3.58 -179.35 -0.64 -13.57 16 15 C 0.13 2.72 8.23 -2.96 -0.02 2.69 16 16 C 0.20 4.42 1.06 -90.85 -0.10 4.33 16 17 O -0.55 -13.05 13.35 -35.23 -0.47 -13.52 16 18 C -0.54 -13.55 9.19 -34.44 -0.32 -13.86 16 19 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 20 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.88 -24.09 13.96 55.43 0.77 -23.31 16 22 Si 0.86 18.50 24.31 -169.99 -4.13 14.37 16 23 H -0.27 -5.69 7.05 56.52 0.40 -5.29 16 24 H -0.26 -5.16 5.16 56.52 0.29 -4.87 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 C 0.06 1.12 4.79 -2.84 -0.01 1.11 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.46 8.07 -51.93 -0.42 0.05 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.15 2.05 5.65 -52.49 -0.30 1.76 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 40 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 41 H 0.35 7.88 3.57 45.56 0.16 8.04 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.10 1.71 7.72 -51.93 -0.40 1.30 16 44 H 0.07 1.33 6.56 -51.93 -0.34 0.99 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -31.88 360.86 -7.62 -39.50 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.03 Total: 10.43 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.91 Total: 6.89 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.05 Total: -45.07 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.03 Total: -31.57 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.13 Total: 14.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.88 -7.62 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193984506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.084 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds