Wall clock time and date at job start Tue Mar 31 2020 12:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47288 * 2 1 4 4 O 1.42891 * 109.47145 * 180.02562 * 3 2 1 5 5 C 1.35429 * 117.00015 * 179.97438 * 4 3 2 6 6 N 1.32238 * 119.79999 * 0.26756 * 5 4 3 7 7 C 1.31873 * 121.80301 * 180.26408 * 6 5 4 8 8 C 1.50698 * 119.41094 * 179.72929 * 7 6 5 9 9 C 1.38362 * 121.18557 * 359.75205 * 7 6 5 10 10 C 1.38341 * 119.45423 * 359.97438 * 9 7 6 11 11 C 1.39982 * 118.34888 * 359.97438 * 10 9 7 12 12 C 1.47528 * 120.59685 * 180.02562 * 11 10 9 13 13 O 1.21587 * 120.00187 * 155.49891 * 12 11 10 14 14 N 1.34781 * 119.99432 * 335.49820 * 12 11 10 15 15 C 1.47586 * 134.48663 * 174.59714 * 14 12 11 16 16 C 1.53944 * 86.11439 * 155.35976 * 15 14 12 17 17 O 1.42903 * 113.74269 * 269.15228 * 16 15 14 18 18 C 1.50702 * 113.74483 * 137.95126 * 16 15 14 19 19 H 1.07996 * 119.99650 * 1.92680 * 18 16 15 20 20 C 1.37871 * 120.00254 * 181.92209 * 18 16 15 21 21 N 1.31517 * 120.00340 * 180.02562 * 20 18 16 22 22 Si 1.86807 * 119.99865 * 0.02562 * 20 18 16 23 23 H 1.48494 * 109.46964 * 269.99465 * 22 20 18 24 24 H 1.48496 * 109.47063 * 30.00001 * 22 20 18 25 25 H 1.48501 * 109.47055 * 149.99949 * 22 20 18 26 26 C 1.47812 * 134.46240 * 354.46693 * 14 12 11 27 27 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47160 * 300.00596 * 1 2 3 29 29 H 1.09003 * 109.47083 * 60.00476 * 1 2 3 30 30 H 1.08999 * 109.47491 * 239.99832 * 2 1 3 31 31 H 1.09003 * 109.47083 * 119.99524 * 2 1 3 32 32 H 1.08999 * 109.46992 * 59.99526 * 3 2 1 33 33 H 1.09003 * 109.46670 * 299.99776 * 3 2 1 34 34 H 1.09001 * 109.46690 * 270.02204 * 8 7 6 35 35 H 1.08995 * 109.47275 * 30.02369 * 8 7 6 36 36 H 1.08996 * 109.47698 * 150.02392 * 8 7 6 37 37 H 1.07997 * 120.27427 * 179.97438 * 9 7 6 38 38 H 1.07998 * 120.82040 * 180.02562 * 10 9 7 39 39 H 1.08997 * 113.77481 * 41.05874 * 15 14 12 40 40 H 1.08996 * 113.87077 * 269.67023 * 15 14 12 41 41 H 0.96694 * 114.00441 * 178.07679 * 17 16 15 42 42 H 0.96998 * 120.00383 * 180.02562 * 21 20 18 43 43 H 1.08992 * 113.77322 * 90.37654 * 26 14 12 44 44 H 1.09004 * 113.82986 * 318.91465 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0838 2.6492 -0.0012 6 7 3.3598 3.7557 0.0041 7 6 3.9170 4.9509 -0.0014 8 6 3.0399 6.1764 -0.0011 9 6 5.2926 5.1000 -0.0080 10 6 6.0987 3.9758 -0.0083 11 6 5.4849 2.7178 -0.0012 12 6 6.2969 1.4860 -0.0006 13 8 5.8335 0.4526 0.4417 14 7 7.5524 1.5064 -0.4904 15 6 8.6530 0.5254 -0.5558 16 6 9.1581 1.3297 -1.7674 17 8 8.6455 0.8678 -3.0188 18 6 10.6515 1.5307 -1.7824 19 1 11.2625 1.0973 -1.0045 20 6 11.2379 2.2677 -2.7893 21 7 12.5413 2.4427 -2.8028 22 14 10.1809 3.0179 -4.1346 23 1 10.0491 2.0536 -5.2561 24 1 8.8352 3.3309 -3.5901 25 1 10.8181 4.2656 -4.6269 26 6 8.3785 2.5200 -1.1796 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.8239 6.4688 -1.0287 35 1 2.1071 5.9554 0.5176 36 1 3.5544 6.9913 0.5080 37 1 5.7333 6.0860 -0.0129 38 1 7.1748 4.0666 -0.0129 39 1 8.3272 -0.4847 -0.8040 40 1 9.3237 0.5569 0.3029 41 1 8.9370 1.3885 -3.7796 42 1 12.9537 2.9616 -3.5110 43 1 8.9673 3.1403 -0.5040 44 1 7.8336 3.0994 -1.9250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193984506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:53 Heat of formation + Delta-G solvation = -64.376830 kcal Electronic energy + Delta-G solvation = -27380.737896 eV Core-core repulsion = 23492.456103 eV Total energy + Delta-G solvation = -3888.281793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13613 -41.10719 -39.34101 -39.08378 -36.26820 -35.03088 -34.55430 -34.22154 -32.63502 -30.75701 -29.10566 -27.83504 -27.21328 -26.83007 -24.12341 -23.98866 -22.57666 -21.91120 -20.64622 -19.45502 -19.29067 -18.42537 -18.21715 -17.77083 -17.58128 -16.87755 -16.41552 -15.75750 -15.70475 -15.52496 -15.44588 -15.27315 -14.87080 -14.76992 -14.62030 -14.07882 -14.04667 -13.92441 -13.72744 -13.29934 -13.21490 -13.07204 -13.00770 -12.97606 -12.68228 -12.45604 -12.30549 -12.05205 -11.93999 -11.61492 -11.53946 -11.13560 -11.02220 -11.01509 -10.80005 -10.43116 -9.76377 -9.47043 -8.42049 -6.54701 -0.40586 0.14744 1.26724 1.27884 1.40424 1.70519 1.76509 1.90436 2.18044 2.64317 2.77214 2.98847 3.21014 3.49136 3.64752 3.76742 3.82270 3.87853 3.92899 4.09550 4.22898 4.28369 4.35544 4.40464 4.49904 4.50656 4.58238 4.64562 4.67269 4.71826 4.80179 4.81077 4.89104 4.93289 4.98422 5.05585 5.10638 5.13292 5.27571 5.28915 5.45834 6.05035 6.17061 6.53410 6.61455 6.67153 6.72898 7.05985 7.13920 8.73148 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.003831 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.818631 B = 7306.463439 C = 8330.041406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.066 3.934 4 O -0.306 6.306 5 C 0.358 3.642 6 N -0.553 5.553 7 C 0.185 3.815 8 C -0.103 4.103 9 C -0.208 4.208 10 C -0.009 4.009 11 C -0.237 4.237 12 C 0.578 3.422 13 O -0.576 6.576 14 N -0.632 5.632 15 C 0.126 3.874 16 C 0.186 3.814 17 O -0.563 6.563 18 C -0.541 4.541 19 H 0.059 0.941 20 C 0.032 3.968 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.230 1.230 25 H -0.278 1.278 26 C 0.074 3.926 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.185 0.815 38 H 0.159 0.841 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.356 0.644 42 H 0.274 0.726 43 H 0.116 0.884 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.764 10.282 3.875 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.009 4.009 4 O -0.211 6.211 5 C 0.179 3.821 6 N -0.279 5.279 7 C 0.047 3.953 8 C -0.159 4.159 9 C -0.227 4.227 10 C -0.034 4.034 11 C -0.243 4.243 12 C 0.369 3.631 13 O -0.457 6.457 14 N -0.366 5.366 15 C 0.004 3.996 16 C 0.145 3.855 17 O -0.375 6.375 18 C -0.579 4.579 19 H 0.077 0.923 20 C -0.170 4.170 21 N -0.559 5.559 22 Si 0.738 3.262 23 H -0.188 1.188 24 H -0.154 1.154 25 H -0.204 1.204 26 C -0.048 4.048 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.202 0.798 38 H 0.176 0.824 39 H 0.085 0.915 40 H 0.126 0.874 41 H 0.209 0.791 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.139 8.993 4.488 24.314 hybrid contribution 1.384 0.249 -0.963 1.704 sum -20.756 9.242 3.525 22.992 Atomic orbital electron populations 1.21634 0.91675 1.03340 1.02915 1.21552 0.97955 0.93836 1.02856 1.22944 0.76091 0.99246 1.02595 1.86438 1.24204 1.24423 1.86054 1.19849 0.88034 0.85320 0.88915 1.67362 1.40072 0.98442 1.22043 1.22017 0.93326 0.92310 0.87640 1.20953 0.98822 0.91332 1.04831 1.22201 0.93426 1.00797 1.06279 1.22090 1.02092 0.89872 0.89348 1.19931 0.91542 0.95163 1.17704 1.17895 0.80289 0.88058 0.76862 1.90724 1.71507 1.34030 1.49436 1.49987 1.10684 1.18321 1.57586 1.23297 0.85015 0.94116 0.97172 1.20604 0.91204 0.91508 0.82165 1.86482 1.75026 1.59463 1.16485 1.21300 0.90323 1.34054 1.12244 0.92297 1.25769 0.96023 0.95530 0.99656 1.69987 1.11230 1.40103 1.34591 0.86409 0.80551 0.79051 0.80146 1.18781 1.15355 1.20376 1.24645 0.90376 0.94431 0.95366 0.90715 0.91533 0.91622 0.92002 0.91845 0.91118 0.91264 0.88311 0.90157 0.87233 0.79754 0.82392 0.91504 0.87381 0.79145 0.91646 0.86608 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 71.98 0.71 -1.38 16 2 C -0.12 -2.83 6.30 30.60 0.19 -2.63 16 3 C 0.07 1.74 5.31 71.98 0.38 2.12 16 4 O -0.31 -11.09 8.51 -68.09 -0.58 -11.67 16 5 C 0.36 12.30 7.48 85.13 0.64 12.93 16 6 N -0.55 -15.32 9.11 -296.06 -2.70 -18.02 16 7 C 0.18 3.82 6.78 42.58 0.29 4.11 16 8 C -0.10 -1.11 10.16 71.24 0.72 -0.39 16 9 C -0.21 -4.06 9.71 22.32 0.22 -3.84 16 10 C -0.01 -0.23 8.95 22.72 0.20 -0.03 16 11 C -0.24 -8.39 5.84 -19.91 -0.12 -8.50 16 12 C 0.58 24.57 7.77 86.69 0.67 25.24 16 13 O -0.58 -28.30 16.33 15.17 0.25 -28.06 16 14 N -0.63 -25.79 3.58 -843.45 -3.02 -28.81 16 15 C 0.13 5.36 8.23 86.48 0.71 6.07 16 16 C 0.19 8.31 1.06 -10.88 -0.01 8.30 16 17 O -0.56 -26.18 13.35 -148.98 -1.99 -28.17 16 18 C -0.54 -27.74 9.19 25.60 0.24 -27.51 16 19 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 20 C 0.03 1.63 5.47 84.65 0.46 2.09 16 21 N -0.92 -51.47 13.96 21.45 0.30 -51.17 16 22 Si 0.91 37.03 24.31 68.60 1.67 38.70 16 23 H -0.26 -10.40 7.05 99.48 0.70 -9.70 16 24 H -0.23 -8.27 5.16 99.48 0.51 -7.75 16 25 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 26 C 0.07 2.77 4.79 86.44 0.41 3.19 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 33 H 0.07 1.70 8.11 -2.39 -0.02 1.68 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.61 8.07 -2.39 -0.02 0.59 16 37 H 0.19 2.02 8.06 -2.91 -0.02 1.99 16 38 H 0.16 3.85 5.65 -2.91 -0.02 3.83 16 39 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.11 4.25 8.09 -2.39 -0.02 4.23 16 41 H 0.36 15.32 3.57 -74.06 -0.26 15.06 16 42 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 43 H 0.12 3.87 7.72 -2.39 -0.02 3.85 16 44 H 0.08 2.93 6.56 -2.38 -0.02 2.91 16 Total: -1.00 -72.48 360.86 0.21 -72.27 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.56 Total: 35.17 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 5.73 Total: 19.76 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -5.42 Total: -98.00 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -2.32 Total: -67.89 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 1.67 Total: 38.70 kcal Total: -72.48 0.21 -72.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193984506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.892 kcal (2) G-P(sol) polarization free energy of solvation -72.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds