Wall clock time and date at job start Tue Mar 31 2020 13:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.50700 * 109.47096 * 120.00086 * 2 1 3 5 5 H 1.08003 * 120.00276 * 119.99373 * 4 2 1 6 6 C 1.37882 * 120.00054 * 300.00105 * 4 2 1 7 7 N 1.31512 * 119.99850 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99951 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47148 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46698 * 119.99880 * 8 6 4 11 11 H 1.48490 * 109.47069 * 239.99735 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 13 13 C 1.34784 * 119.99893 * 85.00288 * 12 2 1 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 2 16 16 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 17 17 C 1.52999 * 109.46969 * 299.99631 * 15 13 12 18 18 N 1.46507 * 109.47005 * 180.02562 * 15 13 12 19 19 C 1.34767 * 119.99839 * 205.00217 * 18 15 13 20 20 O 1.21507 * 120.00519 * 359.97438 * 19 18 15 21 21 O 1.34646 * 119.99952 * 179.97438 * 19 18 15 22 22 C 1.45194 * 117.00048 * 179.97438 * 21 19 18 23 23 C 1.50704 * 109.47184 * 179.97438 * 22 21 19 24 24 C 1.38231 * 120.00043 * 269.72829 * 23 22 21 25 25 C 1.38240 * 119.99895 * 179.76197 * 24 23 22 26 26 C 1.38234 * 119.99793 * 0.51353 * 25 24 23 27 27 C 1.38234 * 119.99972 * 359.73537 * 26 25 24 28 28 C 1.38231 * 120.00362 * 0.02562 * 27 26 25 29 29 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 30 30 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 31 31 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99952 * 180.02562 * 7 6 4 33 33 H 0.97005 * 120.00261 * 265.00500 * 12 2 1 34 34 H 1.08996 * 109.47277 * 60.00292 * 17 15 13 35 35 H 1.09003 * 109.47126 * 180.02562 * 17 15 13 36 36 H 1.09001 * 109.47339 * 300.00351 * 17 15 13 37 37 H 0.96995 * 119.99549 * 24.99018 * 18 15 13 38 38 H 1.08998 * 109.47229 * 299.99396 * 22 21 19 39 39 H 1.09004 * 109.47272 * 59.99864 * 22 21 19 40 40 H 1.08004 * 120.00198 * 359.97438 * 24 23 22 41 41 H 1.07996 * 119.99834 * 180.23072 * 25 24 23 42 42 H 1.08001 * 120.00048 * 179.72506 * 26 25 24 43 43 H 1.08002 * 119.99741 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.00466 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8301 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.1453 -2.2878 3.6038 10 1 3.1465 -0.1874 4.8165 11 1 1.1660 -1.5867 4.8160 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3572 14 8 1.8591 1.1586 -2.4115 15 6 2.6552 -0.7272 -3.5860 16 1 1.9867 -1.5521 -3.8322 17 6 4.0594 -1.2718 -3.3166 18 7 2.7040 0.2140 -4.7077 19 6 2.6297 -0.2421 -5.9737 20 8 2.5228 -1.4339 -6.1849 21 8 2.6740 0.6229 -7.0046 22 6 2.5894 0.0610 -8.3407 23 6 2.6541 1.1713 -9.3577 24 6 1.4909 1.7769 -9.7948 25 6 1.5507 2.7987 -10.7240 26 6 2.7729 3.2077 -11.2239 27 6 3.9357 2.5986 -10.7905 28 6 3.8763 1.5802 -9.8577 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7094 1.1617 3.4844 33 1 2.2490 -1.6319 -1.1526 34 1 4.0236 -1.9719 -2.4820 35 1 4.4272 -1.7843 -4.2056 36 1 4.7280 -0.4469 -3.0704 37 1 2.7895 1.1653 -4.5391 38 1 3.4205 -0.6261 -8.4992 39 1 1.6475 -0.4766 -8.4498 40 1 0.5356 1.4540 -9.4079 41 1 0.6422 3.2743 -11.0627 42 1 2.8193 4.0029 -11.9531 43 1 4.8905 2.9179 -11.1814 44 1 4.7847 1.1041 -9.5194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194661614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:03 Heat of formation + Delta-G solvation = -118.748770 kcal Electronic energy + Delta-G solvation = -25793.050153 eV Core-core repulsion = 21902.410615 eV Total energy + Delta-G solvation = -3890.639537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83116 -40.78484 -40.03921 -37.91121 -36.84659 -36.03132 -34.43123 -33.25651 -32.06592 -31.84831 -30.29259 -27.56451 -27.33837 -25.73932 -23.53951 -23.43424 -22.33833 -22.03457 -21.20123 -20.38697 -18.79227 -18.30045 -17.72406 -17.55761 -17.34570 -17.10345 -16.48918 -16.31893 -16.04016 -15.91636 -15.30436 -14.92492 -14.57843 -14.53916 -14.39757 -14.23787 -13.92503 -13.74705 -13.58969 -13.34739 -13.30055 -12.99272 -12.89066 -12.73994 -12.65690 -12.27363 -12.12882 -12.10511 -12.07839 -11.79471 -11.69822 -11.09105 -10.88700 -10.60318 -10.39506 -9.87022 -9.86652 -9.81502 -8.16788 -6.33657 0.10665 0.45594 1.12372 1.45976 1.47694 1.58294 1.59223 1.67653 2.32119 2.52257 2.78399 3.14341 3.20259 3.67390 3.77089 3.80276 3.97050 4.06801 4.09164 4.22757 4.24990 4.29766 4.58205 4.60803 4.69418 4.73461 4.77853 4.91977 4.99056 5.06774 5.09298 5.10830 5.15909 5.26131 5.42519 5.50478 5.56726 5.57552 5.58666 5.67499 5.87921 6.03644 6.09383 6.24237 6.73417 6.83580 7.15767 7.29863 7.45079 8.89650 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030565 B = 0.002031 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.873184 B =13782.107370 C =14158.604521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.004 0.996 4 C -0.543 4.543 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.258 1.258 10 H -0.285 1.285 11 H -0.281 1.281 12 N -0.693 5.693 13 C 0.500 3.500 14 O -0.588 6.588 15 C 0.151 3.849 16 H 0.123 0.877 17 C -0.153 4.153 18 N -0.689 5.689 19 C 0.656 3.344 20 O -0.595 6.595 21 O -0.368 6.368 22 C 0.127 3.873 23 C -0.116 4.116 24 C -0.108 4.108 25 C -0.131 4.131 26 C -0.112 4.112 27 C -0.130 4.130 28 C -0.105 4.105 29 H 0.067 0.933 30 H 0.012 0.988 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.408 0.592 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.416 0.584 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 -1.085 -25.415 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.182 1.182 10 H -0.211 1.211 11 H -0.207 1.207 12 N -0.342 5.342 13 C 0.286 3.714 14 O -0.469 6.469 15 C 0.044 3.956 16 H 0.140 0.860 17 C -0.211 4.211 18 N -0.349 5.349 19 C 0.409 3.591 20 O -0.486 6.486 21 O -0.282 6.282 22 C 0.053 3.947 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.130 4.130 27 C -0.148 4.148 28 C -0.123 4.123 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.244 0.756 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.253 0.747 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.548 -0.727 -25.471 26.078 hybrid contribution 0.006 -0.088 1.136 1.140 sum 5.554 -0.815 -24.335 24.974 Atomic orbital electron populations 1.21926 0.98347 0.99590 0.99653 1.18401 0.91066 0.92154 0.81618 0.97823 1.21569 1.32456 1.13565 0.90542 0.90478 1.25795 0.94936 0.95605 1.02351 1.70054 1.37058 1.23943 1.24528 0.85292 0.78006 0.78552 0.78444 1.18182 1.21138 1.20717 1.46181 1.64430 1.14422 1.09191 1.20889 0.77904 0.87173 0.85480 1.90656 1.52976 1.17811 1.85452 1.20777 1.00985 0.91319 0.82511 0.85978 1.22137 0.92887 1.02046 1.04041 1.44401 1.76489 1.12299 1.01696 1.17953 0.75915 0.83315 0.81922 1.90965 1.56892 1.15650 1.85097 1.86337 1.86352 1.39692 1.15798 1.21894 1.03915 0.93933 0.74937 1.19592 0.94833 0.99159 0.98083 1.21334 0.98075 0.96035 0.97172 1.21479 0.99335 0.96932 0.97156 1.21625 0.92299 0.99612 0.99441 1.21494 0.99870 0.96061 0.97337 1.21338 0.97099 0.97087 0.96740 0.91430 0.96887 0.93994 0.92602 0.75565 0.88711 0.90220 0.91787 0.74678 0.89481 0.90059 0.85319 0.83816 0.83419 0.83539 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.75 9.26 71.98 0.67 -6.09 16 2 C 0.27 13.51 2.56 44.24 0.11 13.62 16 3 H 0.00 0.23 7.58 -2.39 -0.02 0.21 16 4 C -0.54 -27.64 8.73 25.60 0.22 -27.42 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -51.61 11.32 21.45 0.24 -51.37 16 8 Si 0.97 41.06 29.54 68.60 2.03 43.08 16 9 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 10 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.69 -26.99 4.96 -446.10 -2.21 -29.20 16 13 C 0.50 18.78 7.19 87.65 0.63 19.41 16 14 O -0.59 -26.91 15.50 -3.04 -0.05 -26.96 16 15 C 0.15 4.33 2.99 44.24 0.13 4.47 16 16 H 0.12 3.34 7.58 -2.39 -0.02 3.32 16 17 C -0.15 -3.54 9.38 71.98 0.68 -2.87 16 18 N -0.69 -19.99 4.96 -573.73 -2.84 -22.83 16 19 C 0.66 19.06 8.71 129.79 1.13 20.19 16 20 O -0.59 -19.12 15.80 19.82 0.31 -18.81 16 21 O -0.37 -9.64 10.25 -55.55 -0.57 -10.21 16 22 C 0.13 2.64 5.60 71.24 0.40 3.04 16 23 C -0.12 -2.18 5.52 -19.86 -0.11 -2.29 16 24 C -0.11 -1.86 9.70 22.27 0.22 -1.65 16 25 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 26 C -0.11 -1.38 10.05 22.27 0.22 -1.16 16 27 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16 28 C -0.10 -1.69 9.70 22.27 0.22 -1.47 16 29 H 0.07 3.68 6.07 -2.38 -0.01 3.67 16 30 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.41 13.10 7.97 -92.70 -0.74 12.36 16 34 H 0.09 1.90 7.57 -2.39 -0.02 1.88 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.42 12.35 7.90 -92.71 -0.73 11.62 16 38 H 0.09 1.65 8.08 -2.39 -0.02 1.64 16 39 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 40 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 44 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -68.03 378.14 1.88 -66.16 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.45 Total: 34.30 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.41 Total: 15.84 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -4.81 Total: -103.40 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -0.30 Total: -55.98 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -68.03 1.88 -66.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194661614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.592 kcal (2) G-P(sol) polarization free energy of solvation -68.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds