Wall clock time and date at job start Tue Mar 31 2020 13:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.46388 * 2 1 4 4 C 1.54802 * 109.47073 * 119.99216 * 2 1 3 5 5 N 1.45118 * 109.54171 * 187.88012 * 4 2 1 6 6 C 1.34783 * 118.75778 * 90.73891 * 5 4 2 7 7 O 1.21587 * 119.99811 * 354.20017 * 6 5 4 8 8 N 1.34777 * 119.99889 * 174.19885 * 6 5 4 9 9 C 1.39940 * 119.99676 * 187.23201 * 8 6 5 10 10 C 1.38954 * 120.03856 * 33.48315 * 9 8 6 11 11 C 1.38159 * 120.06788 * 179.97438 * 10 9 8 12 12 C 1.38162 * 120.14117 * 0.02562 * 11 10 9 13 13 C 1.38918 * 120.06685 * 359.97438 * 12 11 10 14 14 O 1.35748 * 120.03235 * 180.02562 * 13 12 11 15 15 C 1.34833 * 116.99924 * 174.43779 * 14 13 12 16 16 H 1.07996 * 120.00023 * 5.15533 * 15 14 13 17 17 C 1.38649 * 119.99997 * 185.15523 * 15 14 13 18 18 N 1.31561 * 120.00104 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00106 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47138 * 90.00330 * 19 17 15 21 21 H 1.48502 * 109.47489 * 209.99885 * 19 17 15 22 22 H 1.48504 * 109.47197 * 330.00210 * 19 17 15 23 23 C 1.38711 * 120.03140 * 213.21543 * 9 8 6 24 24 C 1.47509 * 122.48914 * 270.72428 * 5 4 2 25 25 C 1.53568 * 111.02957 * 41.62390 * 24 5 4 26 26 C 1.51538 * 109.58007 * 39.98169 * 25 24 5 27 27 O 1.38009 * 109.47074 * 240.00593 * 2 1 3 28 28 H 1.08999 * 109.47010 * 299.99772 * 1 2 3 29 29 H 1.08995 * 109.47547 * 59.99916 * 1 2 3 30 30 H 1.08997 * 109.46691 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46387 * 307.90560 * 4 2 1 32 32 H 1.09004 * 109.45523 * 67.87107 * 4 2 1 33 33 H 0.96994 * 120.00216 * 7.22487 * 8 6 5 34 34 H 1.08002 * 119.96617 * 0.02562 * 10 9 8 35 35 H 1.08002 * 119.93009 * 180.02562 * 11 10 9 36 36 H 1.08003 * 119.97154 * 180.02562 * 12 11 10 37 37 H 0.96995 * 120.00267 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.06811 * 359.97349 * 23 9 8 39 39 H 1.08998 * 109.16924 * 162.02498 * 24 5 4 40 40 H 1.09004 * 109.16649 * 281.28470 * 24 5 4 41 41 H 1.08999 * 109.45719 * 160.01281 * 25 24 5 42 42 H 1.09002 * 109.45606 * 279.94815 * 25 24 5 43 43 H 1.08998 * 109.58843 * 28.37533 * 26 25 24 44 44 H 1.08999 * 109.59051 * 148.67143 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0461 -0.7296 1.2641 5 7 3.4851 -0.5702 1.3631 6 6 3.9754 0.4794 2.0519 7 8 3.2203 1.3278 2.4861 8 7 5.3026 0.5884 2.2596 9 6 5.7992 1.5912 3.0999 10 6 5.0634 1.9997 4.2056 11 6 5.5534 2.9893 5.0359 12 6 6.7755 3.5762 4.7697 13 6 7.5159 3.1722 3.6658 14 8 8.7168 3.7490 3.4052 15 6 9.4357 3.2329 2.3879 16 1 9.0147 2.4537 1.7699 17 6 10.7156 3.7026 2.1353 18 7 11.4169 3.1994 1.1425 19 14 11.4435 5.0508 3.2038 20 1 12.1623 4.4397 4.3506 21 1 12.3931 5.8614 2.3997 22 1 10.3539 5.9233 3.7107 23 6 7.0291 2.1746 2.8330 24 6 4.4315 -1.5137 0.7386 25 6 3.9601 -1.9188 -0.6657 26 6 3.3881 -0.7096 -1.3778 27 8 1.9901 -0.6505 -1.1269 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.5719 -0.3037 2.1482 32 1 1.8021 -1.7898 1.1964 33 1 5.9135 -0.0281 1.8266 34 1 4.1080 1.5426 4.4166 35 1 4.9799 3.3048 5.8950 36 1 7.1561 4.3493 5.4208 37 1 12.3121 3.5282 0.9655 38 1 7.6050 1.8555 1.9769 39 1 5.4112 -1.0417 0.6649 40 1 4.5100 -2.4058 1.3600 41 1 4.8046 -2.3087 -1.2338 42 1 3.1924 -2.6882 -0.5830 43 1 3.8654 0.1954 -1.0021 44 1 3.5658 -0.7987 -2.4495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263651101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:33 Heat of formation + Delta-G solvation = -54.148826 kcal Electronic energy + Delta-G solvation = -27269.518505 eV Core-core repulsion = 23381.680232 eV Total energy + Delta-G solvation = -3887.838273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.05682 -39.51106 -38.68335 -36.73385 -35.65757 -34.41922 -33.66964 -32.36373 -30.65000 -29.48386 -28.79906 -27.12030 -25.82002 -25.19355 -22.71420 -21.89580 -21.55945 -21.45046 -19.53588 -18.74601 -17.78704 -17.66102 -16.90028 -16.55153 -16.26976 -15.39421 -15.34837 -15.10184 -14.88231 -14.24563 -14.15425 -13.94391 -13.79610 -13.54579 -13.24245 -13.15780 -13.05483 -12.65705 -12.34591 -12.23005 -12.15906 -11.95057 -11.69637 -11.57654 -11.40182 -11.15804 -10.92482 -10.79423 -10.75669 -10.29561 -10.06074 -9.85594 -9.69116 -9.49898 -8.86598 -8.78242 -7.78671 -7.28100 -6.43950 -4.11168 1.95777 2.28248 2.51262 3.17322 3.21988 3.25270 3.40291 3.42743 3.73192 4.22649 4.36985 4.50048 4.51332 4.66847 4.83453 4.85690 4.90466 4.99169 5.07958 5.16391 5.22059 5.29672 5.36548 5.45048 5.52741 5.59993 5.66400 5.72652 5.82692 5.90768 5.93822 5.98047 6.11804 6.16873 6.32967 6.45993 6.67090 6.90335 7.07771 7.20017 7.22332 7.41185 7.59549 7.75869 7.87224 8.01425 8.53837 8.91801 9.54392 10.63786 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.003128 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.481528 B = 8949.338381 C = 9959.925128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.083 3.917 3 H 0.055 0.945 4 C 0.101 3.899 5 N -0.629 5.629 6 C 0.701 3.299 7 O -0.566 6.566 8 N -0.682 5.682 9 C 0.198 3.802 10 C -0.197 4.197 11 C -0.063 4.063 12 C -0.202 4.202 13 C 0.176 3.824 14 O -0.216 6.216 15 C -0.390 4.390 16 H 0.104 0.896 17 C 0.064 3.936 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.247 4.247 24 C 0.105 3.895 25 C -0.164 4.164 26 C 0.074 3.926 27 O -0.388 6.388 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.403 0.597 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.279 0.721 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.566 -11.342 -2.116 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.023 3.977 3 H 0.073 0.927 4 C -0.023 4.023 5 N -0.366 5.366 6 C 0.403 3.597 7 O -0.442 6.442 8 N -0.331 5.331 9 C 0.104 3.896 10 C -0.218 4.218 11 C -0.082 4.082 12 C -0.222 4.222 13 C 0.123 3.877 14 O -0.121 6.121 15 C -0.465 4.465 16 H 0.122 0.878 17 C -0.139 4.139 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.269 4.269 24 C -0.018 4.018 25 C -0.203 4.203 26 C -0.002 4.002 27 O -0.307 6.307 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.240 0.760 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.152 0.848 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.933 -10.674 -1.953 20.112 hybrid contribution 1.152 0.135 0.098 1.164 sum -15.782 -10.540 -1.854 19.068 Atomic orbital electron populations 1.21703 0.92356 1.02773 1.02843 1.22043 0.95044 0.95509 0.85085 0.92666 1.22247 0.78916 1.01207 0.99911 1.47144 1.06641 1.26938 1.55908 1.15938 0.82472 0.82000 0.79307 1.90942 1.57152 1.40462 1.55619 1.42864 1.05958 1.34467 1.49848 1.17210 0.93343 0.89540 0.89506 1.20591 1.01715 1.03454 0.96069 1.20518 0.94337 0.95216 0.98120 1.20237 0.96821 1.06030 0.99135 1.18774 0.86187 0.90426 0.92266 1.83603 1.25942 1.52772 1.49783 1.20717 0.97087 1.21744 1.06982 0.87837 1.24452 0.94847 0.98091 0.96550 1.69639 1.11672 1.42058 1.28573 0.86180 0.79245 0.81520 0.79974 1.19875 1.20827 1.18281 1.20872 0.98335 1.02981 1.04677 1.21939 0.92164 0.93407 0.94325 1.22469 1.02513 0.99913 0.95368 1.22155 0.80940 0.97135 0.99953 1.86225 1.23392 1.77034 1.44034 0.90728 0.91655 0.91836 0.88940 0.90060 0.75970 0.86204 0.86452 0.86386 0.91076 0.84762 0.90305 0.91085 0.89212 0.89971 0.92832 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.56 37.16 0.36 -0.82 16 2 C 0.08 0.90 3.25 -25.78 -0.08 0.81 16 3 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 4 C 0.10 1.06 4.82 -3.83 -0.02 1.05 16 5 N -0.63 -7.33 2.19 -178.20 -0.39 -7.72 16 6 C 0.70 10.90 7.91 -86.91 -0.69 10.21 16 7 O -0.57 -10.65 13.62 5.29 0.07 -10.58 16 8 N -0.68 -10.69 5.21 -14.24 -0.07 -10.77 16 9 C 0.20 3.78 6.26 -83.72 -0.52 3.26 16 10 C -0.20 -3.72 8.65 -39.35 -0.34 -4.06 16 11 C -0.06 -1.14 10.03 -39.64 -0.40 -1.53 16 12 C -0.20 -4.08 9.99 -39.36 -0.39 -4.47 16 13 C 0.18 4.07 6.65 -39.13 -0.26 3.81 16 14 O -0.22 -5.66 8.58 0.05 0.00 -5.66 16 15 C -0.39 -10.82 9.94 30.88 0.31 -10.51 16 16 H 0.10 2.91 5.43 -52.49 -0.29 2.62 16 17 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.06 13.96 55.48 0.77 -24.28 16 19 Si 0.91 21.51 28.62 -169.99 -4.86 16.64 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.25 -5.30 9.08 -39.21 -0.36 -5.66 16 24 C 0.10 0.90 6.00 -3.19 -0.02 0.88 16 25 C -0.16 -1.21 5.78 -27.18 -0.16 -1.37 16 26 C 0.07 0.70 6.38 36.42 0.23 0.93 16 27 O -0.39 -4.22 9.46 -26.51 -0.25 -4.47 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 1.06 7.36 -51.93 -0.38 0.68 16 32 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.40 5.21 6.27 -40.82 -0.26 4.96 16 34 H 0.12 2.23 6.49 -52.49 -0.34 1.89 16 35 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 37 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.13 2.96 5.63 -52.49 -0.30 2.66 16 39 H 0.08 0.66 5.78 -51.93 -0.30 0.36 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.60 8.01 -51.93 -0.42 0.18 16 43 H 0.05 0.60 7.40 -51.93 -0.38 0.22 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -32.20 354.68 -7.85 -40.05 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.02 Total: 7.23 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.44 Total: -5.79 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.31 Total: -42.77 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.18 Total: -20.71 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.20 -7.85 -40.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263651101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.097 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds