Wall clock time and date at job start Tue Mar 31 2020 13:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46731 * 2 1 4 4 C 1.50693 * 109.47090 * 120.00088 * 2 1 3 5 5 H 1.07996 * 120.00051 * 120.00430 * 4 2 1 6 6 C 1.37878 * 120.00217 * 299.99984 * 4 2 1 7 7 N 1.31517 * 119.99743 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00155 * 179.72629 * 6 4 2 9 9 H 1.48498 * 109.47010 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47199 * 120.00019 * 8 6 4 11 11 H 1.48501 * 109.46995 * 240.00012 * 8 6 4 12 12 N 1.46504 * 109.47094 * 240.00242 * 2 1 3 13 13 C 1.46492 * 119.99821 * 300.00045 * 12 2 1 14 14 C 1.34773 * 119.99880 * 120.00043 * 12 2 1 15 15 O 1.21284 * 120.00109 * 184.53046 * 14 12 2 16 16 C 1.50703 * 120.00304 * 4.52882 * 14 12 2 17 17 H 1.08992 * 110.85663 * 35.15353 * 16 14 12 18 18 C 1.54633 * 110.97022 * 271.36686 * 16 14 12 19 19 C 1.51280 * 104.19264 * 217.08443 * 18 16 14 20 20 O 1.21287 * 124.93833 * 196.28556 * 19 18 16 21 21 N 1.34415 * 110.11770 * 16.24874 * 19 18 16 22 22 C 1.46505 * 124.34722 * 180.40908 * 21 19 18 23 23 C 1.50706 * 109.46480 * 89.98149 * 22 21 19 24 24 C 1.34515 * 125.79348 * 90.00302 * 23 22 21 25 25 C 1.41380 * 106.84212 * 179.97438 * 24 23 22 26 26 C 1.34510 * 106.83944 * 359.97438 * 25 24 23 27 27 O 1.34298 * 108.42473 * 359.73692 * 26 25 24 28 28 C 1.46817 * 111.31964 * 0.38110 * 21 19 18 29 29 H 1.08998 * 109.47214 * 59.99978 * 1 2 3 30 30 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46821 * 299.99918 * 1 2 3 32 32 H 0.96995 * 119.99747 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47851 * 91.40493 * 13 12 2 34 34 H 1.09002 * 109.47197 * 211.40415 * 13 12 2 35 35 H 1.09004 * 109.47527 * 331.40189 * 13 12 2 36 36 H 1.09003 * 110.48475 * 335.75771 * 18 16 14 37 37 H 1.08993 * 110.48390 * 98.26785 * 18 16 14 38 38 H 1.08996 * 109.47332 * 209.97536 * 22 21 19 39 39 H 1.08998 * 109.47343 * 329.98325 * 22 21 19 40 40 H 1.08001 * 126.57814 * 0.02687 * 24 23 22 41 41 H 1.07995 * 126.57641 * 179.97438 * 25 24 23 42 42 H 1.08002 * 125.78641 * 180.02562 * 26 25 24 43 43 H 1.09000 * 110.28273 * 224.03276 * 28 21 19 44 44 H 1.08993 * 110.24170 * 102.01151 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3156 -1.1245 4.0079 9 1 3.1357 -2.2946 3.6036 10 1 3.1434 -0.1956 4.8187 11 1 1.1573 -1.5871 4.8138 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.1296 -0.5805 -3.1133 16 6 3.2417 1.3741 -1.7956 17 1 3.4272 1.5126 -0.7305 18 6 2.2084 2.4005 -2.3153 19 6 3.0509 3.5473 -2.8290 20 8 2.6370 4.6633 -3.0618 21 7 4.3248 3.1495 -2.9892 22 6 5.4074 4.0148 -3.4642 23 6 6.0644 4.6891 -2.2874 24 6 7.1090 4.2099 -1.5885 25 6 7.3971 5.1583 -0.5803 26 6 6.5117 6.1606 -0.7238 27 8 5.7109 5.8740 -1.7631 28 6 4.4926 1.7368 -2.6264 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7088 1.1612 3.4843 33 1 0.7511 -2.1442 -2.0207 34 1 2.4738 -2.5881 -1.9647 35 1 1.5051 -2.5906 -0.4714 36 1 1.6165 1.9703 -3.1231 37 1 1.5607 2.7336 -1.5045 38 1 6.1448 3.4148 -3.9973 39 1 5.0002 4.7710 -4.1355 40 1 7.6286 3.2795 -1.7644 41 1 8.1782 5.0908 0.1624 42 1 6.4573 7.0479 -0.1104 43 1 5.3940 1.6048 -2.0280 44 1 4.5411 1.1202 -3.5238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264063339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:36 Heat of formation + Delta-G solvation = -61.242071 kcal Electronic energy + Delta-G solvation = -27712.979391 eV Core-core repulsion = 23824.833532 eV Total energy + Delta-G solvation = -3888.145860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.50265 -41.90970 -40.35244 -37.61643 -37.21247 -34.77750 -34.54023 -33.77300 -31.11152 -30.95503 -28.98730 -28.13671 -27.25163 -26.73258 -23.93919 -22.99451 -22.62163 -21.82374 -20.62813 -19.77626 -18.72836 -18.48484 -18.27163 -17.88655 -16.99404 -16.88942 -16.63429 -16.41851 -16.09202 -15.89907 -15.39697 -14.91241 -14.78006 -14.57363 -14.26724 -14.01872 -13.81270 -13.75165 -13.71437 -13.51950 -13.43461 -13.03150 -12.84659 -12.80877 -12.73534 -12.58827 -12.43400 -12.41055 -12.14814 -11.92092 -11.25482 -11.16780 -10.85367 -10.68330 -10.48325 -9.98604 -9.46899 -9.37852 -8.13408 -6.27658 0.64364 1.34896 1.42871 1.47881 1.55695 1.59566 1.65304 2.05687 2.18633 2.30619 2.47186 3.15197 3.17998 3.42204 3.65364 3.74230 3.83735 4.05182 4.13252 4.14750 4.29529 4.41512 4.51020 4.56799 4.60672 4.69698 4.72559 4.77284 4.89602 4.92876 4.98956 4.99758 5.03710 5.09437 5.17126 5.34669 5.41340 5.58322 5.60139 5.74100 5.86305 5.97250 6.21661 6.22583 6.65403 6.84551 6.96264 7.26377 7.45534 8.89703 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.004235 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.605819 B = 6609.476326 C = 7811.464385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.256 3.744 3 H 0.046 0.954 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.028 3.972 7 N -0.909 5.909 8 Si 0.951 3.049 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.282 1.282 12 N -0.591 5.591 13 C 0.093 3.907 14 C 0.524 3.476 15 O -0.582 6.582 16 C -0.117 4.117 17 H 0.110 0.890 18 C -0.132 4.132 19 C 0.522 3.478 20 O -0.565 6.565 21 N -0.608 5.608 22 C 0.204 3.796 23 C -0.060 4.060 24 C -0.193 4.193 25 C -0.228 4.228 26 C -0.046 4.046 27 O -0.198 6.198 28 C 0.125 3.875 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.152 0.848 39 H 0.093 0.907 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.229 0.771 43 H 0.102 0.898 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.592 4.097 -7.440 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.155 3.845 3 H 0.064 0.936 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.173 4.173 7 N -0.548 5.548 8 Si 0.777 3.223 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.320 5.320 13 C -0.049 4.049 14 C 0.311 3.689 15 O -0.464 6.464 16 C -0.139 4.139 17 H 0.128 0.872 18 C -0.173 4.173 19 C 0.311 3.689 20 O -0.444 6.444 21 N -0.340 5.340 22 C 0.083 3.917 23 C -0.111 4.111 24 C -0.213 4.213 25 C -0.247 4.247 26 C -0.113 4.113 27 O -0.094 6.094 28 C 0.003 3.997 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.170 0.830 39 H 0.112 0.888 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.245 0.755 43 H 0.121 0.879 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.262 4.687 -8.082 13.877 hybrid contribution 0.052 -0.343 1.519 1.558 sum 10.313 4.344 -6.563 12.974 Atomic orbital electron populations 1.21962 0.97499 0.99996 1.00516 1.18926 0.91747 0.92902 0.80943 0.93586 1.21576 1.31832 1.13253 0.91050 0.92383 1.25492 0.94961 0.95494 1.01333 1.69959 1.36854 1.23589 1.24398 0.85611 0.78080 0.78740 0.79823 1.19361 1.20998 1.20840 1.48231 1.48326 1.12600 1.22876 1.21498 1.00129 0.81600 1.01690 1.20134 0.78201 0.87721 0.82813 1.90595 1.59331 1.69711 1.26797 1.22125 0.96755 0.92162 1.02833 0.87234 1.22201 0.97939 0.93717 1.03397 1.20992 0.83666 0.88212 0.76023 1.90691 1.76687 1.23418 1.53576 1.48422 1.08050 1.12004 1.65560 1.19968 0.89124 0.92871 0.89765 1.23208 0.99442 0.86736 1.01685 1.21993 0.99271 1.02458 0.97529 1.22210 1.03824 0.95605 1.03027 1.24797 0.92477 1.02997 0.91074 1.84079 1.51206 1.34755 1.39363 1.22100 0.97337 0.79877 1.00381 0.95303 0.94533 0.90947 0.92615 0.92782 0.91637 0.90770 0.86947 0.87663 0.82998 0.88844 0.81279 0.81345 0.75486 0.87937 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 8.97 71.98 0.65 -5.34 16 2 C 0.26 11.04 2.47 44.24 0.11 11.15 16 3 H 0.05 2.08 5.13 -2.38 -0.01 2.07 16 4 C -0.54 -25.72 7.98 25.60 0.20 -25.51 16 5 H 0.06 2.79 7.36 -2.91 -0.02 2.77 16 6 C 0.03 1.37 5.30 84.65 0.45 1.82 16 7 N -0.91 -46.71 11.32 21.45 0.24 -46.47 16 8 Si 0.95 39.72 29.54 68.60 2.03 41.75 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 N -0.59 -22.61 2.75 -826.80 -2.28 -24.89 16 13 C 0.09 3.21 9.37 127.77 1.20 4.41 16 14 C 0.52 18.80 6.79 87.66 0.60 19.39 16 15 O -0.58 -22.23 15.26 -3.04 -0.05 -22.28 16 16 C -0.12 -3.67 2.48 -10.48 -0.03 -3.70 16 17 H 0.11 3.76 6.64 -2.39 -0.02 3.75 16 18 C -0.13 -4.16 6.23 30.59 0.19 -3.97 16 19 C 0.52 17.29 8.02 87.90 0.71 17.99 16 20 O -0.56 -22.55 17.59 -3.05 -0.05 -22.61 16 21 N -0.61 -16.11 2.92 -822.18 -2.40 -18.51 16 22 C 0.20 4.38 6.46 85.63 0.55 4.93 16 23 C -0.06 -1.49 6.90 24.83 0.17 -1.31 16 24 C -0.19 -4.13 10.81 22.19 0.24 -3.89 16 25 C -0.23 -4.72 10.91 22.19 0.24 -4.48 16 26 C -0.05 -1.01 12.09 66.97 0.81 -0.20 16 27 O -0.20 -5.65 10.65 -2.48 -0.03 -5.68 16 28 C 0.13 3.15 6.85 86.82 0.59 3.75 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 1.48 7.67 -2.39 -0.02 1.47 16 31 H 0.07 3.44 6.07 -2.39 -0.01 3.43 16 32 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 2.15 7.53 -2.39 -0.02 2.14 16 35 H 0.07 2.59 7.04 -2.38 -0.02 2.58 16 36 H 0.11 3.39 7.89 -2.39 -0.02 3.37 16 37 H 0.11 3.50 7.89 -2.39 -0.02 3.48 16 38 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.09 2.13 7.92 -2.39 -0.02 2.11 16 40 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 41 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.23 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.10 2.51 6.86 -2.39 -0.02 2.49 16 Total: -1.00 -63.88 366.04 5.16 -58.72 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 1.01 Total: 24.94 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.68 Total: 15.03 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -4.43 Total: -89.87 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.13 Total: -50.57 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -63.88 5.16 -58.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264063339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.525 kcal (2) G-P(sol) polarization free energy of solvation -63.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds