Wall clock time and date at job start Tue Mar 31 2020 13:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.46500 * 119.99929 * 300.00372 * 12 2 1 14 14 C 1.34781 * 119.99819 * 120.00094 * 12 2 1 15 15 O 1.21274 * 119.99737 * 359.97438 * 14 12 2 16 16 C 1.50697 * 119.99418 * 180.02562 * 14 12 2 17 17 H 1.09002 * 110.85883 * 303.78034 * 16 14 12 18 18 C 1.54629 * 110.97482 * 67.61986 * 16 14 12 19 19 C 1.51280 * 104.19385 * 142.91322 * 18 16 14 20 20 O 1.21288 * 124.93647 * 163.74889 * 19 18 16 21 21 N 1.34417 * 110.11848 * 343.74460 * 19 18 16 22 22 C 1.46502 * 124.34594 * 179.61297 * 21 19 18 23 23 C 1.50701 * 109.46998 * 269.97735 * 22 21 19 24 24 C 1.34511 * 125.78954 * 89.72173 * 23 22 21 25 25 C 1.41385 * 106.84242 * 179.88743 * 24 23 22 26 26 C 1.34510 * 106.84042 * 0.37058 * 25 24 23 27 27 O 1.34303 * 108.42153 * 359.77123 * 26 25 24 28 28 C 1.46760 * 111.30124 * 359.59621 * 21 19 18 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47032 * 89.99688 * 13 12 2 34 34 H 1.08998 * 109.46624 * 209.99482 * 13 12 2 35 35 H 1.08998 * 109.46783 * 329.99227 * 13 12 2 36 36 H 1.08995 * 110.48260 * 261.59186 * 18 16 14 37 37 H 1.08998 * 110.48286 * 24.23568 * 18 16 14 38 38 H 1.08996 * 109.47488 * 29.98137 * 22 21 19 39 39 H 1.09002 * 109.46623 * 149.98181 * 22 21 19 40 40 H 1.08006 * 126.57914 * 0.02562 * 24 23 22 41 41 H 1.07999 * 126.57978 * 180.12043 * 25 24 23 42 42 H 1.07996 * 125.79222 * 179.74971 * 26 25 24 43 43 H 1.09002 * 110.24574 * 258.01380 * 28 21 19 44 44 H 1.08997 * 110.31734 * 136.05136 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0858 1.1256 -1.8915 16 6 3.2952 -0.7460 -3.3139 17 1 3.8486 -1.6455 -3.0442 18 6 2.1302 -1.0791 -4.2745 19 6 2.7167 -0.8743 -5.6539 20 8 2.2310 -1.2913 -6.6841 21 7 3.8541 -0.1628 -5.5717 22 6 4.6823 0.2077 -6.7220 23 6 5.7084 -0.8680 -6.9694 24 6 5.5455 -1.9435 -7.7606 25 6 6.7508 -2.6803 -7.7037 26 6 7.5753 -2.0153 -6.8746 27 8 6.9386 -0.9183 -6.4328 28 6 4.1596 0.1955 -4.1817 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.9026 -0.5283 4.4376 33 1 0.7377 -2.1444 -1.9993 34 1 2.4629 -2.5818 -1.9863 35 1 1.5296 -2.5968 -0.4707 36 1 1.8127 -2.1137 -4.1447 37 1 1.2943 -0.3990 -4.1105 38 1 4.0512 0.3175 -7.6038 39 1 5.1875 1.1515 -6.5169 40 1 4.6639 -2.1948 -8.3318 41 1 6.9666 -3.6025 -8.2227 42 1 8.5788 -2.3131 -6.6089 43 1 3.8915 1.2350 -3.9925 44 1 5.2174 0.0354 -3.9733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264063340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:40 Heat of formation + Delta-G solvation = -34.093230 kcal Electronic energy + Delta-G solvation = -27309.226247 eV Core-core repulsion = 23422.257650 eV Total energy + Delta-G solvation = -3886.968597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.76974 -40.83597 -39.07885 -36.47581 -35.59171 -34.03347 -33.11177 -32.64387 -30.74121 -29.71680 -27.78555 -26.37210 -26.28971 -25.19424 -23.50268 -21.94394 -21.07185 -20.81526 -19.64893 -18.49440 -17.75768 -17.36967 -17.05686 -16.65132 -16.03216 -15.81289 -15.64496 -15.24844 -14.90960 -14.47152 -14.14748 -13.72069 -13.61975 -13.53430 -13.03665 -13.00385 -12.91885 -12.85635 -12.70634 -12.49756 -12.28046 -12.06838 -11.83880 -11.69966 -11.41936 -11.37690 -11.17439 -10.78657 -10.21974 -10.16890 -10.06625 -9.70093 -9.43136 -9.19900 -9.05022 -8.72086 -8.69278 -7.86577 -6.20609 -4.22020 1.39118 2.29118 2.40435 2.79052 2.94115 3.05200 3.19549 3.33291 3.34784 3.57758 4.16024 4.29822 4.30317 4.43053 4.71126 4.75548 4.81808 4.85472 5.00518 5.10065 5.15081 5.19417 5.40975 5.47435 5.56549 5.58080 5.69454 5.73021 5.84533 5.85643 5.89936 6.17847 6.20279 6.21779 6.26662 6.29539 6.41793 6.75691 6.80499 6.95400 7.02935 7.24073 7.54580 7.96039 8.05089 8.37929 8.69572 8.80645 9.39927 10.91943 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.002943 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.498907 B = 9513.422781 C = 9850.232332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.063 0.937 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.580 5.580 13 C 0.078 3.922 14 C 0.518 3.482 15 O -0.547 6.547 16 C -0.122 4.122 17 H 0.114 0.886 18 C -0.141 4.141 19 C 0.525 3.475 20 O -0.530 6.530 21 N -0.616 5.616 22 C 0.208 3.792 23 C -0.040 4.040 24 C -0.185 4.185 25 C -0.218 4.218 26 C -0.036 4.036 27 O -0.173 6.173 28 C 0.116 3.884 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.266 0.734 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.203 0.797 43 H 0.098 0.902 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 -2.171 -20.329 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.128 3.872 3 H 0.081 0.919 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.310 5.310 13 C -0.066 4.066 14 C 0.304 3.696 15 O -0.426 6.426 16 C -0.144 4.144 17 H 0.132 0.868 18 C -0.182 4.182 19 C 0.313 3.687 20 O -0.406 6.406 21 N -0.350 5.350 22 C 0.086 3.914 23 C -0.091 4.091 24 C -0.205 4.205 25 C -0.238 4.238 26 C -0.104 4.104 27 O -0.068 6.068 28 C -0.007 4.007 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.117 0.883 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.219 0.781 43 H 0.116 0.884 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.785 -1.539 -20.389 21.249 hybrid contribution -0.458 0.195 0.281 0.571 sum 5.328 -1.343 -20.108 20.845 Atomic orbital electron populations 1.22452 0.98945 1.01197 0.99297 1.19324 0.90051 0.95199 0.82666 0.91883 1.21139 1.32902 1.14353 0.88456 0.90256 1.24860 0.95613 0.96579 0.95615 1.69870 1.45058 1.40143 0.98022 0.86914 0.80443 0.83785 0.77533 1.20373 1.22129 1.18785 1.47831 1.48703 1.11877 1.22588 1.21770 0.99076 0.82647 1.03106 1.19822 0.79250 0.86833 0.83695 1.90660 1.58388 1.16935 1.76616 1.22223 0.97350 1.00526 0.94251 0.86807 1.22361 0.98693 1.05621 0.91498 1.20896 0.80218 0.76469 0.91084 1.90713 1.64292 1.51184 1.34403 1.48407 1.24062 1.54862 1.07676 1.19656 0.88434 0.93377 0.89890 1.22923 0.85487 1.01017 0.99717 1.21730 0.99826 0.95529 1.03463 1.21879 0.94669 1.02995 1.04208 1.24085 0.99251 0.87291 0.99756 1.84035 1.24703 1.40531 1.57574 1.22080 1.00154 1.00376 0.78053 0.92492 0.94804 0.93135 0.92358 0.93359 0.92368 0.89391 0.87032 0.87125 0.86744 0.88263 0.83299 0.83451 0.78073 0.88429 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.67 37.16 0.32 -2.97 16 2 C 0.23 5.21 2.23 -69.08 -0.15 5.06 16 3 H 0.06 1.60 5.96 -51.93 -0.31 1.29 16 4 C -0.53 -14.03 8.57 -34.44 -0.30 -14.33 16 5 H 0.08 2.25 7.58 -52.49 -0.40 1.85 16 6 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 8 Si 0.88 21.22 24.37 -169.99 -4.14 17.08 16 9 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.21 6.53 56.52 0.37 -5.85 16 12 N -0.58 -10.81 2.75 -175.26 -0.48 -11.30 16 13 C 0.08 1.13 8.18 59.85 0.49 1.62 16 14 C 0.52 9.10 6.96 -10.98 -0.08 9.03 16 15 O -0.55 -11.55 14.83 5.56 0.08 -11.46 16 16 C -0.12 -1.54 2.55 -90.14 -0.23 -1.77 16 17 H 0.11 1.29 7.25 -51.93 -0.38 0.91 16 18 C -0.14 -1.63 5.47 -26.74 -0.15 -1.77 16 19 C 0.53 6.79 8.02 -10.86 -0.09 6.71 16 20 O -0.53 -8.27 17.59 5.55 0.10 -8.17 16 21 N -0.62 -7.02 2.92 -173.78 -0.51 -7.53 16 22 C 0.21 2.01 6.46 -5.19 -0.03 1.97 16 23 C -0.04 -0.44 6.90 -35.63 -0.25 -0.68 16 24 C -0.19 -2.02 10.81 -39.70 -0.43 -2.45 16 25 C -0.22 -2.07 10.91 -39.70 -0.43 -2.50 16 26 C -0.04 -0.32 12.09 29.41 0.36 0.04 16 27 O -0.17 -1.90 10.65 5.69 0.06 -1.84 16 28 C 0.12 1.37 6.71 -3.12 -0.02 1.35 16 29 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.06 0.69 6.12 -51.93 -0.32 0.37 16 35 H 0.09 1.46 7.02 -51.93 -0.36 1.09 16 36 H 0.11 1.11 7.56 -51.93 -0.39 0.71 16 37 H 0.11 1.30 7.89 -51.93 -0.41 0.89 16 38 H 0.11 1.02 7.92 -51.93 -0.41 0.61 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.10 1.26 6.96 -51.93 -0.36 0.90 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 357.79 15.07 5.39 5.39 Total: -1.00 -33.72 357.79 -5.86 -39.58 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.05 Total: 2.38 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.08 Total: 1.32 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.22 Total: -44.28 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.24 Total: -21.47 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.72 -5.86 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264063340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.485 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds