Wall clock time and date at job start Tue Mar 31 2020 13:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.46500 * 119.99929 * 300.00372 * 12 2 1 14 14 C 1.34781 * 119.99819 * 120.00094 * 12 2 1 15 15 O 1.21274 * 119.99737 * 359.97438 * 14 12 2 16 16 C 1.50697 * 119.99418 * 180.02562 * 14 12 2 17 17 H 1.09002 * 110.85883 * 303.78034 * 16 14 12 18 18 C 1.54629 * 110.97482 * 67.61986 * 16 14 12 19 19 C 1.51280 * 104.19385 * 142.91322 * 18 16 14 20 20 O 1.21288 * 124.93647 * 163.74889 * 19 18 16 21 21 N 1.34417 * 110.11848 * 343.74460 * 19 18 16 22 22 C 1.46502 * 124.34594 * 179.61297 * 21 19 18 23 23 C 1.50701 * 109.46998 * 269.97735 * 22 21 19 24 24 C 1.34511 * 125.78954 * 89.72173 * 23 22 21 25 25 C 1.41385 * 106.84242 * 179.88743 * 24 23 22 26 26 C 1.34510 * 106.84042 * 0.37058 * 25 24 23 27 27 O 1.34303 * 108.42153 * 359.77123 * 26 25 24 28 28 C 1.46760 * 111.30124 * 359.59621 * 21 19 18 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47032 * 89.99688 * 13 12 2 34 34 H 1.08998 * 109.46624 * 209.99482 * 13 12 2 35 35 H 1.08998 * 109.46783 * 329.99227 * 13 12 2 36 36 H 1.08995 * 110.48260 * 261.59186 * 18 16 14 37 37 H 1.08998 * 110.48286 * 24.23568 * 18 16 14 38 38 H 1.08996 * 109.47488 * 29.98137 * 22 21 19 39 39 H 1.09002 * 109.46623 * 149.98181 * 22 21 19 40 40 H 1.08006 * 126.57914 * 0.02562 * 24 23 22 41 41 H 1.07999 * 126.57978 * 180.12043 * 25 24 23 42 42 H 1.07996 * 125.79222 * 179.74971 * 26 25 24 43 43 H 1.09002 * 110.24574 * 258.01380 * 28 21 19 44 44 H 1.08997 * 110.31734 * 136.05136 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0858 1.1256 -1.8915 16 6 3.2952 -0.7460 -3.3139 17 1 3.8486 -1.6455 -3.0442 18 6 2.1302 -1.0791 -4.2745 19 6 2.7167 -0.8743 -5.6539 20 8 2.2310 -1.2913 -6.6841 21 7 3.8541 -0.1628 -5.5717 22 6 4.6823 0.2077 -6.7220 23 6 5.7084 -0.8680 -6.9694 24 6 5.5455 -1.9435 -7.7606 25 6 6.7508 -2.6803 -7.7037 26 6 7.5753 -2.0153 -6.8746 27 8 6.9386 -0.9183 -6.4328 28 6 4.1596 0.1955 -4.1817 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.9026 -0.5283 4.4376 33 1 0.7377 -2.1444 -1.9993 34 1 2.4629 -2.5818 -1.9863 35 1 1.5296 -2.5968 -0.4707 36 1 1.8127 -2.1137 -4.1447 37 1 1.2943 -0.3990 -4.1105 38 1 4.0512 0.3175 -7.6038 39 1 5.1875 1.1515 -6.5169 40 1 4.6639 -2.1948 -8.3318 41 1 6.9666 -3.6025 -8.2227 42 1 8.5788 -2.3131 -6.6089 43 1 3.8915 1.2350 -3.9925 44 1 5.2174 0.0354 -3.9733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264063340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:39 Heat of formation + Delta-G solvation = -56.808786 kcal Electronic energy + Delta-G solvation = -27310.211268 eV Core-core repulsion = 23422.257650 eV Total energy + Delta-G solvation = -3887.953618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.51651 -41.92368 -40.39929 -37.65277 -37.07830 -35.14119 -34.48618 -33.78675 -32.28918 -30.72507 -28.78684 -27.63894 -27.21083 -27.06295 -24.73678 -22.73579 -22.32401 -21.80078 -20.58651 -19.86399 -18.96645 -18.54256 -18.35035 -17.83403 -17.44304 -16.89636 -16.74283 -16.39992 -16.20346 -15.70817 -15.32980 -14.98986 -14.74261 -14.53167 -14.41942 -14.39661 -14.07663 -13.78194 -13.74464 -13.72009 -13.55206 -13.45330 -12.99105 -12.94132 -12.78593 -12.65585 -12.46716 -12.33050 -12.02711 -11.56984 -11.32928 -11.18999 -10.88416 -10.78114 -10.61047 -10.00433 -9.47971 -9.39288 -8.33436 -6.37677 0.62967 1.28363 1.37755 1.39064 1.45678 1.59122 1.66516 1.98513 2.13468 2.28032 2.29203 3.02576 3.13600 3.32207 3.66019 3.72067 3.82984 4.03378 4.10551 4.11133 4.31124 4.41860 4.44600 4.51068 4.51241 4.58283 4.61392 4.63908 4.75527 4.83210 4.87790 4.90919 4.98998 5.03635 5.13706 5.16059 5.31308 5.34182 5.51859 5.54906 5.72016 5.90042 6.18853 6.20563 6.65210 6.72490 6.98799 7.21108 7.34992 8.82444 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.002943 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.498907 B = 9513.422781 C = 9850.232332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.232 3.768 3 H 0.035 0.965 4 C -0.525 4.525 5 H 0.048 0.952 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.940 3.060 9 H -0.256 1.256 10 H -0.299 1.299 11 H -0.259 1.259 12 N -0.589 5.589 13 C 0.074 3.926 14 C 0.515 3.485 15 O -0.588 6.588 16 C -0.108 4.108 17 H 0.135 0.865 18 C -0.134 4.134 19 C 0.523 3.477 20 O -0.559 6.559 21 N -0.610 5.610 22 C 0.205 3.795 23 C -0.053 4.053 24 C -0.201 4.201 25 C -0.232 4.232 26 C -0.032 4.032 27 O -0.186 6.186 28 C 0.121 3.879 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.134 0.866 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.144 0.856 41 H 0.166 0.834 42 H 0.237 0.763 43 H 0.086 0.914 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -2.504 -22.001 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.128 3.872 3 H 0.052 0.948 4 C -0.563 4.563 5 H 0.066 0.934 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.767 3.233 9 H -0.182 1.182 10 H -0.227 1.227 11 H -0.184 1.184 12 N -0.318 5.318 13 C -0.068 4.068 14 C 0.303 3.697 15 O -0.469 6.469 16 C -0.130 4.130 17 H 0.153 0.847 18 C -0.174 4.174 19 C 0.312 3.688 20 O -0.438 6.438 21 N -0.343 5.343 22 C 0.083 3.917 23 C -0.103 4.103 24 C -0.221 4.221 25 C -0.251 4.251 26 C -0.100 4.100 27 O -0.082 6.082 28 C -0.002 4.002 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.183 0.817 42 H 0.253 0.747 43 H 0.105 0.895 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.535 -1.891 -22.092 22.853 hybrid contribution -0.253 0.240 0.741 0.819 sum 5.282 -1.652 -21.351 22.057 Atomic orbital electron populations 1.22315 0.96672 1.02328 0.99915 1.18964 0.91734 0.93534 0.82928 0.94756 1.21391 1.31613 1.13149 0.90174 0.93368 1.25625 0.97144 0.99392 0.95418 1.70000 1.47204 1.42164 0.98610 0.86003 0.79826 0.80355 0.77122 1.18187 1.22664 1.18364 1.47862 1.49002 1.13390 1.21548 1.21995 1.01838 0.80255 1.02757 1.20546 0.78109 0.86473 0.84547 1.90641 1.59574 1.18953 1.77753 1.22116 0.98074 1.00707 0.92103 0.84748 1.22377 0.97989 1.07045 0.89989 1.21080 0.80383 0.76189 0.91131 1.90704 1.65116 1.52567 1.35426 1.48444 1.23828 1.54113 1.07899 1.19845 0.88339 0.94019 0.89462 1.23015 0.85822 1.01347 1.00163 1.21889 1.00368 0.96116 1.03704 1.22176 0.94275 1.03835 1.04823 1.24816 1.00279 0.86161 0.98710 1.84033 1.24820 1.41435 1.57924 1.21990 1.00490 0.99565 0.78121 0.91136 0.92343 0.94236 0.92338 0.90239 0.89219 0.91797 0.84758 0.87036 0.86328 0.86304 0.83831 0.81673 0.74671 0.89550 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.98 8.67 71.98 0.62 -5.36 16 2 C 0.23 10.41 2.23 44.25 0.10 10.51 16 3 H 0.03 1.75 5.96 -2.39 -0.01 1.74 16 4 C -0.52 -28.16 8.57 25.60 0.22 -27.94 16 5 H 0.05 2.82 7.58 -2.91 -0.02 2.80 16 6 C 0.02 1.28 5.45 84.65 0.46 1.74 16 7 N -0.94 -56.47 13.96 21.45 0.30 -56.17 16 8 Si 0.94 43.82 24.37 68.60 1.67 45.49 16 9 H -0.26 -11.03 6.87 99.48 0.68 -10.35 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.26 -11.81 6.53 99.48 0.65 -11.16 16 12 N -0.59 -21.11 2.75 -826.80 -2.28 -23.39 16 13 C 0.07 1.97 8.18 127.77 1.05 3.02 16 14 C 0.52 17.40 6.96 87.66 0.61 18.01 16 15 O -0.59 -24.66 14.83 -3.01 -0.04 -24.71 16 16 C -0.11 -2.48 2.55 -10.48 -0.03 -2.51 16 17 H 0.13 2.58 7.25 -2.39 -0.02 2.57 16 18 C -0.13 -2.69 5.47 30.59 0.17 -2.53 16 19 C 0.52 12.50 8.02 87.90 0.71 13.21 16 20 O -0.56 -16.68 17.59 -3.05 -0.05 -16.73 16 21 N -0.61 -12.82 2.92 -822.31 -2.40 -15.22 16 22 C 0.20 3.65 6.46 85.63 0.55 4.21 16 23 C -0.05 -1.07 6.90 24.83 0.17 -0.90 16 24 C -0.20 -4.17 10.81 22.19 0.24 -3.93 16 25 C -0.23 -3.98 10.91 22.19 0.24 -3.73 16 26 C -0.03 -0.50 12.09 66.97 0.81 0.31 16 27 O -0.19 -3.74 10.65 -2.55 -0.03 -3.77 16 28 C 0.12 2.65 6.71 86.84 0.58 3.23 16 29 H 0.07 2.51 7.67 -2.39 -0.02 2.49 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.61 3.27 -2.38 -0.01 1.60 16 32 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 34 H 0.09 1.81 6.12 -2.39 -0.01 1.80 16 35 H 0.06 2.05 7.02 -2.39 -0.02 2.03 16 36 H 0.13 2.11 7.56 -2.39 -0.02 2.10 16 37 H 0.11 2.30 7.89 -2.39 -0.02 2.28 16 38 H 0.12 2.01 7.92 -2.39 -0.02 1.99 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.24 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.09 2.15 6.96 -2.39 -0.02 2.13 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -74.99 357.79 4.61 -70.38 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.94 Total: 16.78 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.50 Total: 7.33 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -4.37 Total: -94.77 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.13 Total: -45.21 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.67 Total: 45.49 kcal Total: -74.99 4.61 -70.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264063340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.567 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds