Wall clock time and date at job start Tue Mar 31 2020 13:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.47286 * 2 1 4 4 C 1.50709 * 109.46725 * 240.00444 * 2 1 3 5 5 H 1.07998 * 119.99737 * 239.99711 * 4 2 1 6 6 C 1.37868 * 120.00186 * 60.27518 * 4 2 1 7 7 N 1.31517 * 119.99848 * 359.72212 * 6 4 2 8 8 Si 1.86799 * 120.00323 * 179.72477 * 6 4 2 9 9 H 1.48496 * 109.46929 * 59.99651 * 8 6 4 10 10 H 1.48498 * 109.47399 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46844 * 300.00001 * 8 6 4 12 12 N 1.46504 * 109.47534 * 120.00640 * 2 1 3 13 13 C 1.46504 * 120.00035 * 59.99521 * 12 2 1 14 14 C 1.34773 * 120.00024 * 240.00064 * 12 2 1 15 15 O 1.21287 * 119.99562 * 354.87872 * 14 12 2 16 16 C 1.50695 * 120.00399 * 174.88274 * 14 12 2 17 17 H 1.09000 * 110.85210 * 38.51998 * 16 14 12 18 18 C 1.54627 * 110.96882 * 274.73675 * 16 14 12 19 19 C 1.51280 * 104.19384 * 217.07958 * 18 16 14 20 20 O 1.21281 * 124.94183 * 196.28225 * 19 18 16 21 21 N 1.34410 * 110.11769 * 16.25468 * 19 18 16 22 22 C 1.46505 * 124.35335 * 180.43064 * 21 19 18 23 23 C 1.50696 * 109.47317 * 89.96942 * 22 21 19 24 24 C 1.34514 * 125.79228 * 90.00092 * 23 22 21 25 25 C 1.41378 * 106.84284 * 180.02562 * 24 23 22 26 26 C 1.34520 * 106.84130 * 0.02562 * 25 24 23 27 27 O 1.34299 * 108.41881 * 359.74025 * 26 25 24 28 28 C 1.46763 * 111.30052 * 0.40408 * 21 19 18 29 29 H 1.08996 * 109.47787 * 59.99883 * 1 2 3 30 30 H 1.09002 * 109.47428 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46911 * 299.99172 * 1 2 3 32 32 H 0.97002 * 120.00317 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46544 * 95.27104 * 13 12 2 34 34 H 1.08993 * 109.47134 * 215.27325 * 13 12 2 35 35 H 1.09000 * 109.46798 * 335.27188 * 13 12 2 36 36 H 1.09001 * 110.48906 * 335.75800 * 18 16 14 37 37 H 1.09000 * 110.48918 * 98.26862 * 18 16 14 38 38 H 1.08999 * 109.47120 * 209.97092 * 22 21 19 39 39 H 1.09003 * 109.46579 * 329.97232 * 22 21 19 40 40 H 1.08002 * 126.57650 * 0.03789 * 24 23 22 41 41 H 1.08006 * 126.57959 * 179.97438 * 25 24 23 42 42 H 1.07994 * 125.78811 * 180.02562 * 26 25 24 43 43 H 1.09001 * 110.24705 * 223.98689 * 28 21 19 44 44 H 1.09001 * 110.24597 * 101.98885 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.7038 -0.2360 -2.4828 7 7 0.9477 0.8333 -2.6033 8 14 2.3327 -1.1119 -4.0081 9 1 1.8383 -2.5122 -4.0139 10 1 1.8416 -0.4091 -5.2205 11 1 3.8177 -1.1113 -4.0023 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0934 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 3.1629 1.0949 1.8468 16 6 3.2004 -0.7084 3.3689 17 1 3.4194 -1.7631 3.2026 18 6 2.1124 -0.5335 4.4536 19 6 2.8933 -0.3535 5.7367 20 8 2.4310 -0.4640 6.8525 21 7 4.1741 -0.0540 5.4602 22 6 5.2067 0.1759 6.4738 23 6 5.8811 -1.1294 6.8089 24 6 6.9671 -1.6339 6.1961 25 6 7.2563 -2.8669 6.8245 26 6 6.3295 -3.0424 7.7835 27 8 5.5023 -1.9844 7.7730 28 6 4.4055 0.0126 4.0125 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.7169 1.1674 -3.4843 33 1 2.4617 -2.7357 1.0539 34 1 1.5322 -2.2629 2.4964 35 1 0.7362 -2.3248 0.9056 36 1 1.5073 0.3496 4.2482 37 1 1.4828 -1.4216 4.5091 38 1 5.9455 0.8778 6.0871 39 1 4.7482 0.5891 7.3722 40 1 7.5133 -1.1834 5.3805 41 1 8.0657 -3.5392 6.5808 42 1 6.2645 -3.8883 8.4518 43 1 5.3328 -0.4992 3.7548 44 1 4.4432 1.0512 3.6839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264063342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:42 Heat of formation + Delta-G solvation = -62.945907 kcal Electronic energy + Delta-G solvation = -27213.138542 eV Core-core repulsion = 23324.918799 eV Total energy + Delta-G solvation = -3888.219743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.49993 -41.88667 -40.32940 -37.63228 -36.99724 -35.07678 -34.48082 -33.75134 -31.60661 -30.57974 -28.77624 -27.61401 -27.28232 -27.06288 -24.61671 -22.71839 -22.23592 -21.79529 -20.60335 -19.83591 -18.71512 -18.38938 -18.33262 -17.83127 -17.27050 -16.77189 -16.71039 -16.36622 -16.08545 -15.82744 -15.35237 -14.82232 -14.68878 -14.61358 -14.33573 -14.09676 -13.84720 -13.72824 -13.67622 -13.52936 -13.43361 -12.95293 -12.88382 -12.82362 -12.69351 -12.61789 -12.40745 -12.35017 -12.14708 -12.10471 -11.20442 -11.14770 -10.84884 -10.62390 -10.44945 -9.98699 -9.46618 -9.31211 -8.11800 -6.27945 0.65052 1.36728 1.44293 1.45860 1.53068 1.60750 1.70489 2.03980 2.18628 2.31375 2.49327 3.16030 3.16803 3.39410 3.68014 3.74376 3.83320 4.05316 4.12068 4.14399 4.30146 4.40351 4.44017 4.52146 4.60837 4.69588 4.77758 4.81610 4.90433 4.92163 4.94404 5.00162 5.08126 5.11982 5.17718 5.33507 5.49684 5.60500 5.65371 5.70035 5.88737 6.05611 6.19658 6.23375 6.80127 6.83502 6.97386 7.32218 7.48383 8.92078 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.002928 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.286836 B = 9559.832398 C =10164.191807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.263 3.737 3 H 0.012 0.988 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.961 3.039 9 H -0.264 1.264 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.595 5.595 13 C 0.079 3.921 14 C 0.512 3.488 15 O -0.592 6.592 16 C -0.109 4.109 17 H 0.137 0.863 18 C -0.133 4.133 19 C 0.521 3.479 20 O -0.564 6.564 21 N -0.608 5.608 22 C 0.202 3.798 23 C -0.057 4.057 24 C -0.193 4.193 25 C -0.228 4.228 26 C -0.042 4.042 27 O -0.196 6.196 28 C 0.119 3.881 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.264 0.736 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.231 0.769 43 H 0.106 0.894 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.987 -8.894 17.092 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.161 3.839 3 H 0.030 0.970 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.325 5.325 13 C -0.063 4.063 14 C 0.299 3.701 15 O -0.473 6.473 16 C -0.130 4.130 17 H 0.155 0.845 18 C -0.173 4.173 19 C 0.310 3.690 20 O -0.443 6.443 21 N -0.341 5.341 22 C 0.081 3.919 23 C -0.108 4.108 24 C -0.213 4.213 25 C -0.247 4.247 26 C -0.110 4.110 27 O -0.092 6.092 28 C -0.003 4.003 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.162 0.838 39 H 0.110 0.890 40 H 0.184 0.816 41 H 0.187 0.813 42 H 0.247 0.753 43 H 0.124 0.876 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.634 -8.189 17.623 21.690 hybrid contribution 0.280 -0.173 -1.229 1.272 sum 9.915 -8.361 16.394 20.904 Atomic orbital electron populations 1.21906 0.97210 1.00202 1.00031 1.18532 0.91476 0.92282 0.81629 0.96970 1.21572 1.31886 1.12985 0.91153 0.91991 1.25699 0.95137 0.95597 1.01961 1.70012 1.37413 1.23856 1.24417 0.85562 0.78493 0.78962 0.78320 1.18828 1.21236 1.20161 1.48178 1.48747 1.13314 1.22228 1.21877 1.01811 0.80365 1.02296 1.20567 0.78286 0.85892 0.85314 1.90645 1.56814 1.21243 1.78630 1.22163 0.96520 1.02970 0.91380 0.84512 1.22260 0.97821 1.06708 0.90487 1.21078 0.83054 0.74574 0.90323 1.90708 1.73956 1.53113 1.26572 1.48420 1.09018 1.69175 1.07477 1.19892 0.90356 0.89660 0.91992 1.23067 0.98749 0.95842 0.93096 1.21976 0.98621 0.97313 1.03367 1.22207 1.03358 0.99483 0.99609 1.24814 0.91530 0.91692 1.02929 1.84085 1.49566 1.28042 1.47532 1.22075 0.98291 1.02589 0.77368 0.91567 0.93314 0.95865 0.92729 0.92149 0.88987 0.90941 0.87948 0.85064 0.83785 0.89043 0.81641 0.81328 0.75290 0.87552 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.96 71.98 0.65 -5.55 16 2 C 0.26 12.92 2.62 44.25 0.12 13.04 16 3 H 0.01 0.73 6.91 -2.39 -0.02 0.71 16 4 C -0.54 -28.00 8.37 25.60 0.21 -27.78 16 5 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 6 C 0.02 0.83 5.31 84.65 0.45 1.28 16 7 N -0.92 -51.72 11.33 21.44 0.24 -51.48 16 8 Si 0.96 41.83 29.54 68.60 2.03 43.86 16 9 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.60 -22.72 2.75 -826.80 -2.28 -25.00 16 13 C 0.08 2.19 9.08 127.77 1.16 3.35 16 14 C 0.51 18.43 6.83 87.66 0.60 19.03 16 15 O -0.59 -26.79 14.90 -3.05 -0.05 -26.83 16 16 C -0.11 -2.62 2.51 -10.49 -0.03 -2.65 16 17 H 0.14 2.57 7.08 -2.39 -0.02 2.56 16 18 C -0.13 -3.11 6.09 30.59 0.19 -2.93 16 19 C 0.52 14.17 8.02 87.90 0.71 14.87 16 20 O -0.56 -19.37 17.59 -3.03 -0.05 -19.42 16 21 N -0.61 -13.70 2.92 -822.34 -2.40 -16.10 16 22 C 0.20 3.81 6.46 85.63 0.55 4.36 16 23 C -0.06 -1.17 6.90 24.83 0.17 -1.00 16 24 C -0.19 -3.35 10.81 22.19 0.24 -3.11 16 25 C -0.23 -3.61 10.91 22.19 0.24 -3.37 16 26 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 27 O -0.20 -4.61 10.65 -2.51 -0.03 -4.63 16 28 C 0.12 2.63 6.83 86.83 0.59 3.22 16 29 H 0.07 3.43 6.08 -2.39 -0.01 3.42 16 30 H 0.05 2.01 6.66 -2.39 -0.02 2.00 16 31 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.80 5.91 -2.39 -0.01 1.79 16 35 H 0.07 2.12 6.44 -2.39 -0.02 2.10 16 36 H 0.10 2.65 7.89 -2.39 -0.02 2.63 16 37 H 0.13 2.48 7.55 -2.39 -0.02 2.46 16 38 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 1.88 7.92 -2.39 -0.02 1.86 16 40 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.23 2.00 8.06 -2.91 -0.02 1.97 16 43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.08 2.20 6.85 -2.39 -0.02 2.18 16 Total: -1.00 -74.68 364.78 5.14 -69.54 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 1.01 Total: 17.19 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.66 Total: 12.88 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -4.43 Total: -92.58 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.13 Total: -50.89 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -74.68 5.14 -69.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264063342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.597 kcal (2) G-P(sol) polarization free energy of solvation -74.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds