Wall clock time and date at job start Tue Mar 31 2020 12:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.67949 * 2 1 4 4 C 1.53295 * 109.68074 * 239.44558 * 2 1 3 5 5 H 1.09002 * 109.51497 * 172.65523 * 4 2 1 6 6 C 1.53004 * 109.51466 * 52.50150 * 4 2 1 7 7 O 1.42961 * 109.22485 * 292.57842 * 4 2 1 8 8 C 1.42969 * 114.16675 * 297.41916 * 7 4 2 9 9 C 1.53295 * 109.21992 * 62.58100 * 8 7 4 10 10 N 1.47152 * 108.38415 * 307.69491 * 9 8 7 11 11 C 1.34777 * 120.98521 * 230.51925 * 10 9 8 12 12 O 1.21586 * 120.00109 * 173.87453 * 11 10 9 13 13 N 1.34774 * 119.99677 * 353.86446 * 11 10 9 14 14 C 1.39945 * 119.99992 * 187.09027 * 13 11 10 15 15 C 1.38962 * 120.03700 * 33.47002 * 14 13 11 16 16 C 1.38156 * 120.06549 * 179.97438 * 15 14 13 17 17 C 1.38159 * 120.14106 * 0.03178 * 16 15 14 18 18 C 1.38902 * 120.07377 * 359.97342 * 17 16 15 19 19 O 1.35746 * 120.03891 * 180.02562 * 18 17 16 20 20 C 1.34833 * 117.00365 * 174.68973 * 19 18 17 21 21 H 1.07998 * 119.99988 * 2.84326 * 20 19 18 22 22 C 1.38649 * 120.00164 * 182.84818 * 20 19 18 23 23 N 1.31562 * 120.00084 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00080 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47151 * 89.99833 * 24 22 20 26 26 H 1.48504 * 109.47031 * 209.99743 * 24 22 20 27 27 H 1.48506 * 109.46965 * 329.99297 * 24 22 20 28 28 C 1.38708 * 120.03339 * 213.20493 * 14 13 11 29 29 H 1.08998 * 109.46831 * 299.47891 * 1 2 3 30 30 H 1.08990 * 109.47364 * 59.48013 * 1 2 3 31 31 H 1.09001 * 109.47025 * 179.48407 * 1 2 3 32 32 H 1.08998 * 109.46760 * 300.25697 * 6 4 2 33 33 H 1.08996 * 109.46524 * 60.25288 * 6 4 2 34 34 H 1.08998 * 109.47127 * 180.25407 * 6 4 2 35 35 H 1.09004 * 109.51176 * 182.50130 * 8 7 4 36 36 H 1.08996 * 109.51134 * 302.60336 * 8 7 4 37 37 H 1.08997 * 109.68594 * 67.41907 * 9 8 7 38 38 H 1.09005 * 109.68168 * 187.97773 * 9 8 7 39 39 H 0.97000 * 120.00372 * 7.09367 * 13 11 10 40 40 H 1.07997 * 119.96486 * 0.02562 * 15 14 13 41 41 H 1.08010 * 119.92589 * 180.02562 * 16 15 14 42 42 H 1.08009 * 119.96271 * 179.97438 * 17 16 15 43 43 H 0.97002 * 120.00028 * 180.02562 * 23 22 20 44 44 H 1.07996 * 120.07241 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0463 -0.7338 -1.2430 5 1 3.1283 -0.6205 -1.3095 6 6 1.3918 -0.1434 -2.4936 7 8 1.7168 -2.1212 -1.1414 8 6 2.3260 -2.7878 -0.0330 9 6 1.8240 -2.1592 1.2719 10 7 2.0257 -0.7037 1.1936 11 6 2.6456 -0.0347 2.1859 12 8 2.9023 1.1466 2.0548 13 7 2.9807 -0.6750 3.3234 14 6 3.4880 0.0472 4.4095 15 6 3.0459 1.3422 4.6512 16 6 3.5459 2.0555 5.7235 17 6 4.4871 1.4844 6.5583 18 6 4.9332 0.1904 6.3221 19 8 5.8576 -0.3702 7.1430 20 6 6.1659 -1.6645 6.9244 21 1 5.7180 -2.1938 6.0964 22 6 7.0578 -2.3158 7.7626 23 7 7.6038 -1.6709 8.7709 24 14 7.4855 -4.1088 7.4592 25 1 8.6601 -4.1912 6.5545 26 1 7.8086 -4.7660 8.7511 27 1 6.3276 -4.7944 6.8311 28 6 4.4287 -0.5309 5.2491 29 1 -0.3633 0.5057 0.8946 30 1 -0.3633 0.5218 -0.8852 31 1 -0.3633 -1.0276 -0.0093 32 1 0.3098 -0.2554 -2.4247 33 1 1.6434 0.9143 -2.5704 34 1 1.7559 -0.6686 -3.3766 35 1 2.0610 -3.8449 -0.0535 36 1 3.4091 -2.6827 -0.0956 37 1 0.7637 -2.3765 1.4000 38 1 2.3864 -2.5629 2.1140 39 1 2.8704 -1.6365 3.3894 40 1 2.3100 1.7912 4.0006 41 1 3.2003 3.0618 5.9095 42 1 4.8763 2.0448 7.3956 43 1 8.2281 -2.1265 9.3571 44 1 4.7705 -1.5389 5.0662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272317329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:41 Heat of formation + Delta-G solvation = -56.082222 kcal Electronic energy + Delta-G solvation = -27156.353901 eV Core-core repulsion = 23268.431789 eV Total energy + Delta-G solvation = -3887.922112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02503 -39.47452 -38.51061 -36.52344 -35.06150 -34.67427 -33.61431 -32.23225 -29.71109 -29.12243 -28.99999 -28.18752 -25.36859 -24.93553 -23.77250 -22.32166 -21.82524 -20.50148 -19.33256 -18.70318 -17.92789 -17.37368 -16.79303 -16.27278 -15.91115 -15.63493 -15.27195 -15.00026 -14.92605 -14.40538 -14.24862 -13.98549 -13.64093 -13.47613 -13.34810 -13.12744 -12.92724 -12.63757 -12.35908 -12.21489 -12.10781 -11.90960 -11.75323 -11.56020 -11.31641 -11.12540 -11.00183 -10.78733 -10.76884 -10.47001 -10.37105 -10.02896 -9.64783 -9.46846 -8.82271 -8.75344 -7.71191 -7.14024 -6.45549 -4.05196 2.03620 2.35886 2.45093 3.09863 3.10293 3.15424 3.22796 3.35419 3.73952 3.94608 4.30337 4.52481 4.59346 4.62368 4.65385 4.78942 4.94308 5.06147 5.09997 5.12984 5.23026 5.27694 5.37059 5.42609 5.45105 5.56957 5.58873 5.68529 5.82553 5.96592 5.99438 6.07726 6.12304 6.24633 6.33330 6.54661 6.76574 6.80518 7.00063 7.08699 7.20664 7.33420 7.42726 7.82010 7.89451 7.98797 8.55390 8.99749 9.70501 10.72624 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.003179 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.092728 B = 8805.897699 C =10207.952847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 H 0.109 0.891 4 C 0.078 3.922 5 H 0.064 0.936 6 C -0.146 4.146 7 O -0.375 6.375 8 C 0.049 3.951 9 C 0.073 3.927 10 N -0.630 5.630 11 C 0.710 3.290 12 O -0.566 6.566 13 N -0.682 5.682 14 C 0.198 3.802 15 C -0.205 4.205 16 C -0.062 4.062 17 C -0.202 4.202 18 C 0.170 3.830 19 O -0.176 6.176 20 C -0.392 4.392 21 H 0.090 0.910 22 C 0.039 3.961 23 N -0.863 5.863 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.277 1.277 27 H -0.269 1.269 28 C -0.259 4.259 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.400 0.600 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.270 0.730 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 -2.015 -18.501 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.127 0.873 4 C 0.019 3.981 5 H 0.082 0.918 6 C -0.203 4.203 7 O -0.293 6.293 8 C -0.028 4.028 9 C -0.050 4.050 10 N -0.369 5.369 11 C 0.412 3.588 12 O -0.442 6.442 13 N -0.330 5.330 14 C 0.105 3.895 15 C -0.226 4.226 16 C -0.080 4.080 17 C -0.222 4.222 18 C 0.116 3.884 19 O -0.080 6.080 20 C -0.469 4.469 21 H 0.107 0.893 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.193 1.193 28 C -0.281 4.281 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.237 0.763 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.080 0.920 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.209 -1.211 -18.360 22.650 hybrid contribution 0.415 -1.507 0.120 1.568 sum -12.794 -2.718 -18.239 22.444 Atomic orbital electron populations 1.22106 0.94383 1.02728 1.02448 1.21737 0.94829 0.97986 0.83161 0.87258 1.22518 0.99031 0.81722 0.94795 0.91831 1.21833 1.01882 1.00750 0.95833 1.87946 1.71930 1.21894 1.47551 1.22947 0.97544 0.97065 0.85269 1.22352 1.02486 0.80900 0.99292 1.47403 1.61861 1.07368 1.20269 1.15756 0.78335 0.85000 0.79722 1.90939 1.58928 1.14051 1.80274 1.42769 1.67098 1.10802 1.12335 1.17188 0.93750 0.92185 0.86396 1.20526 1.06127 0.94897 1.01028 1.20517 0.95586 0.98357 0.93589 1.20240 1.03515 0.94836 1.03595 1.19034 0.88278 0.92045 0.89034 1.84003 1.48508 1.26728 1.48725 1.21265 1.27024 0.84101 1.14462 0.89282 1.25265 0.96010 1.00097 0.95112 1.70038 1.27771 1.36918 1.15038 0.85732 0.79090 0.80538 0.78140 1.19930 1.20234 1.19311 1.20755 1.03548 1.03016 1.00758 0.92262 0.90953 0.91848 0.91087 0.90642 0.91516 0.87463 0.92443 0.90235 0.89454 0.76270 0.86403 0.86619 0.86370 0.92023 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.64 37.16 0.32 -1.06 16 2 C 0.13 1.33 2.87 -67.42 -0.19 1.13 16 3 H 0.11 1.32 7.06 -51.93 -0.37 0.95 16 4 C 0.08 0.71 3.10 -26.58 -0.08 0.63 16 5 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 6 C -0.15 -0.99 9.02 37.16 0.34 -0.66 16 7 O -0.37 -3.57 10.01 -35.23 -0.35 -3.92 16 8 C 0.05 0.40 6.99 37.31 0.26 0.66 16 9 C 0.07 0.64 6.17 -3.53 -0.02 0.62 16 10 N -0.63 -7.47 2.71 -170.43 -0.46 -7.94 16 11 C 0.71 11.25 8.02 -86.92 -0.70 10.55 16 12 O -0.57 -10.96 13.59 5.29 0.07 -10.89 16 13 N -0.68 -10.76 5.25 -14.24 -0.07 -10.84 16 14 C 0.20 3.88 6.26 -83.71 -0.52 3.36 16 15 C -0.20 -4.02 8.65 -39.34 -0.34 -4.36 16 16 C -0.06 -1.18 10.03 -39.64 -0.40 -1.58 16 17 C -0.20 -4.38 9.99 -39.36 -0.39 -4.77 16 18 C 0.17 4.15 6.65 -39.13 -0.26 3.89 16 19 O -0.18 -5.02 9.76 0.05 0.00 -5.01 16 20 C -0.39 -10.84 9.49 30.88 0.29 -10.54 16 21 H 0.09 2.26 5.20 -52.49 -0.27 1.98 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 24 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 28 C -0.26 -5.64 9.08 -39.21 -0.36 -6.00 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.50 6.42 -51.93 -0.33 0.17 16 31 H 0.06 0.55 7.23 -51.93 -0.38 0.17 16 32 H 0.07 0.45 6.36 -51.93 -0.33 0.12 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.62 7.67 -51.93 -0.40 0.22 16 38 H 0.09 0.67 5.79 -51.93 -0.30 0.37 16 39 H 0.40 5.08 6.38 -40.82 -0.26 4.82 16 40 H 0.12 2.29 6.48 -52.49 -0.34 1.95 16 41 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 42 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -33.72 353.79 -7.69 -41.41 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.79 Total: 8.29 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.15 Total: -7.17 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.22 Total: -43.20 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.28 Total: -19.83 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.72 -7.69 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272317329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.673 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds