Wall clock time and date at job start Tue Mar 31 2020 12:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.67949 * 2 1 4 4 C 1.53295 * 109.68074 * 239.44558 * 2 1 3 5 5 H 1.09002 * 109.51497 * 172.65523 * 4 2 1 6 6 C 1.53004 * 109.51466 * 52.50150 * 4 2 1 7 7 O 1.42961 * 109.22485 * 292.57842 * 4 2 1 8 8 C 1.42969 * 114.16675 * 297.41916 * 7 4 2 9 9 C 1.53295 * 109.21992 * 62.58100 * 8 7 4 10 10 N 1.47152 * 108.38415 * 307.69491 * 9 8 7 11 11 C 1.34777 * 120.98521 * 230.51925 * 10 9 8 12 12 O 1.21586 * 120.00109 * 173.87453 * 11 10 9 13 13 N 1.34774 * 119.99677 * 353.86446 * 11 10 9 14 14 C 1.39945 * 119.99992 * 187.09027 * 13 11 10 15 15 C 1.38962 * 120.03700 * 33.47002 * 14 13 11 16 16 C 1.38156 * 120.06549 * 179.97438 * 15 14 13 17 17 C 1.38159 * 120.14106 * 0.03178 * 16 15 14 18 18 C 1.38902 * 120.07377 * 359.97342 * 17 16 15 19 19 O 1.35746 * 120.03891 * 180.02562 * 18 17 16 20 20 C 1.34833 * 117.00365 * 174.68973 * 19 18 17 21 21 H 1.07998 * 119.99988 * 2.84326 * 20 19 18 22 22 C 1.38649 * 120.00164 * 182.84818 * 20 19 18 23 23 N 1.31562 * 120.00084 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00080 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47151 * 89.99833 * 24 22 20 26 26 H 1.48504 * 109.47031 * 209.99743 * 24 22 20 27 27 H 1.48506 * 109.46965 * 329.99297 * 24 22 20 28 28 C 1.38708 * 120.03339 * 213.20493 * 14 13 11 29 29 H 1.08998 * 109.46831 * 299.47891 * 1 2 3 30 30 H 1.08990 * 109.47364 * 59.48013 * 1 2 3 31 31 H 1.09001 * 109.47025 * 179.48407 * 1 2 3 32 32 H 1.08998 * 109.46760 * 300.25697 * 6 4 2 33 33 H 1.08996 * 109.46524 * 60.25288 * 6 4 2 34 34 H 1.08998 * 109.47127 * 180.25407 * 6 4 2 35 35 H 1.09004 * 109.51176 * 182.50130 * 8 7 4 36 36 H 1.08996 * 109.51134 * 302.60336 * 8 7 4 37 37 H 1.08997 * 109.68594 * 67.41907 * 9 8 7 38 38 H 1.09005 * 109.68168 * 187.97773 * 9 8 7 39 39 H 0.97000 * 120.00372 * 7.09367 * 13 11 10 40 40 H 1.07997 * 119.96486 * 0.02562 * 15 14 13 41 41 H 1.08010 * 119.92589 * 180.02562 * 16 15 14 42 42 H 1.08009 * 119.96271 * 179.97438 * 17 16 15 43 43 H 0.97002 * 120.00028 * 180.02562 * 23 22 20 44 44 H 1.07996 * 120.07241 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0463 -0.7338 -1.2430 5 1 3.1283 -0.6205 -1.3095 6 6 1.3918 -0.1434 -2.4936 7 8 1.7168 -2.1212 -1.1414 8 6 2.3260 -2.7878 -0.0330 9 6 1.8240 -2.1592 1.2719 10 7 2.0257 -0.7037 1.1936 11 6 2.6456 -0.0347 2.1859 12 8 2.9023 1.1466 2.0548 13 7 2.9807 -0.6750 3.3234 14 6 3.4880 0.0472 4.4095 15 6 3.0459 1.3422 4.6512 16 6 3.5459 2.0555 5.7235 17 6 4.4871 1.4844 6.5583 18 6 4.9332 0.1904 6.3221 19 8 5.8576 -0.3702 7.1430 20 6 6.1659 -1.6645 6.9244 21 1 5.7180 -2.1938 6.0964 22 6 7.0578 -2.3158 7.7626 23 7 7.6038 -1.6709 8.7709 24 14 7.4855 -4.1088 7.4592 25 1 8.6601 -4.1912 6.5545 26 1 7.8086 -4.7660 8.7511 27 1 6.3276 -4.7944 6.8311 28 6 4.4287 -0.5309 5.2491 29 1 -0.3633 0.5057 0.8946 30 1 -0.3633 0.5218 -0.8852 31 1 -0.3633 -1.0276 -0.0093 32 1 0.3098 -0.2554 -2.4247 33 1 1.6434 0.9143 -2.5704 34 1 1.7559 -0.6686 -3.3766 35 1 2.0610 -3.8449 -0.0535 36 1 3.4091 -2.6827 -0.0956 37 1 0.7637 -2.3765 1.4000 38 1 2.3864 -2.5629 2.1140 39 1 2.8704 -1.6365 3.3894 40 1 2.3100 1.7912 4.0006 41 1 3.2003 3.0618 5.9095 42 1 4.8763 2.0448 7.3956 43 1 8.2281 -2.1265 9.3571 44 1 4.7705 -1.5389 5.0662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272317329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:40 Heat of formation + Delta-G solvation = -78.415516 kcal Electronic energy + Delta-G solvation = -27157.322345 eV Core-core repulsion = 23268.431789 eV Total energy + Delta-G solvation = -3888.890556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.14197 -40.84672 -39.90787 -38.16749 -36.11388 -35.86012 -34.59663 -34.18315 -31.10463 -30.46282 -29.80669 -29.46206 -27.31315 -25.80692 -24.53588 -23.63584 -23.52344 -21.76777 -20.51115 -19.82620 -19.62831 -18.92058 -17.80436 -17.23285 -17.04501 -16.74788 -16.63120 -16.52211 -16.00705 -15.83609 -15.72930 -15.49477 -15.24350 -14.62209 -14.55008 -14.20234 -14.00686 -13.73235 -13.57118 -13.31417 -13.17842 -12.91975 -12.80140 -12.73379 -12.63890 -12.57506 -12.43287 -12.11284 -11.97552 -11.59524 -11.47380 -11.32899 -11.24531 -11.02440 -10.73694 -9.72362 -9.33088 -8.85994 -8.46066 -6.14877 0.42062 0.69122 1.30317 1.36080 1.45711 1.53688 1.92448 2.18117 2.63309 2.70395 2.84216 3.17349 3.48262 3.56339 3.78772 3.90507 3.93910 4.08689 4.11567 4.27950 4.30548 4.34192 4.39198 4.43822 4.59335 4.65725 4.69160 4.74173 4.78324 4.82563 4.91355 4.98358 5.00808 5.11175 5.17644 5.22323 5.33535 5.43151 5.48513 5.66049 5.66202 5.79513 6.01816 6.11403 6.17645 6.68399 6.98121 7.30225 7.77453 8.77026 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.003179 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.092728 B = 8805.897699 C =10207.952847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.121 3.879 3 H 0.090 0.910 4 C 0.081 3.919 5 H 0.050 0.950 6 C -0.142 4.142 7 O -0.380 6.380 8 C 0.048 3.952 9 C 0.067 3.933 10 N -0.622 5.622 11 C 0.706 3.294 12 O -0.606 6.606 13 N -0.674 5.674 14 C 0.205 3.795 15 C -0.200 4.200 16 C -0.049 4.049 17 C -0.215 4.215 18 C 0.138 3.862 19 O -0.225 6.225 20 C -0.414 4.414 21 H 0.104 0.896 22 C -0.022 4.022 23 N -0.921 5.921 24 Si 1.018 2.982 25 H -0.266 1.266 26 H -0.273 1.273 27 H -0.248 1.248 28 C -0.261 4.261 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.416 0.584 40 H 0.126 0.874 41 H 0.154 0.846 42 H 0.120 0.880 43 H 0.273 0.727 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 -3.441 -20.921 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 H 0.108 0.892 4 C 0.022 3.978 5 H 0.068 0.932 6 C -0.199 4.199 7 O -0.299 6.299 8 C -0.029 4.029 9 C -0.055 4.055 10 N -0.360 5.360 11 C 0.409 3.591 12 O -0.485 6.485 13 N -0.324 5.324 14 C 0.110 3.890 15 C -0.221 4.221 16 C -0.068 4.068 17 C -0.235 4.235 18 C 0.086 3.914 19 O -0.132 6.132 20 C -0.490 4.490 21 H 0.121 0.879 22 C -0.220 4.220 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.191 1.191 26 H -0.198 1.198 27 H -0.171 1.171 28 C -0.283 4.283 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.154 0.846 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.255 0.745 40 H 0.144 0.856 41 H 0.172 0.828 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.265 -2.663 -20.851 25.979 hybrid contribution 0.842 -0.908 0.688 1.417 sum -14.424 -3.571 -20.163 25.047 Atomic orbital electron populations 1.22049 0.92688 1.03191 1.02846 1.21912 0.96056 0.97162 0.83088 0.89181 1.22517 0.98466 0.81753 0.95050 0.93172 1.21847 1.02196 1.01190 0.94709 1.87951 1.72026 1.21840 1.48082 1.23095 0.97114 0.98349 0.84327 1.22649 1.03858 0.78709 1.00306 1.47498 1.60279 1.08802 1.19408 1.15898 0.78402 0.84675 0.80175 1.90907 1.60565 1.15870 1.81120 1.42621 1.66698 1.11494 1.11556 1.17197 0.92695 0.92392 0.86716 1.20811 1.05626 0.94876 1.00751 1.20896 0.93871 0.99756 0.92242 1.20472 1.04313 0.94241 1.04452 1.19548 0.88707 0.93326 0.89804 1.83976 1.50837 1.27477 1.50869 1.21822 1.27518 0.84427 1.15197 0.87892 1.26598 0.95499 1.05372 0.94528 1.70191 1.29427 1.39416 1.16828 0.84592 0.79465 0.73869 0.78324 1.19072 1.19756 1.17123 1.20766 1.03927 1.03029 1.00579 0.93495 0.88929 0.91272 0.90213 0.89773 0.91006 0.84640 0.93172 0.88520 0.88443 0.74453 0.85570 0.82824 0.86172 0.91837 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.64 71.98 0.62 -1.64 16 2 C 0.12 2.35 2.87 44.96 0.13 2.48 16 3 H 0.09 2.12 7.06 -2.39 -0.02 2.10 16 4 C 0.08 1.33 3.10 30.69 0.10 1.43 16 5 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 6 C -0.14 -1.60 9.02 71.98 0.65 -0.95 16 7 O -0.38 -6.24 10.01 -148.98 -1.49 -7.73 16 8 C 0.05 0.64 6.99 72.08 0.50 1.14 16 9 C 0.07 0.98 6.17 86.35 0.53 1.52 16 10 N -0.62 -13.68 2.71 -811.39 -2.20 -15.88 16 11 C 0.71 21.48 8.02 179.05 1.44 22.91 16 12 O -0.61 -23.03 13.59 -3.99 -0.05 -23.08 16 13 N -0.67 -20.26 5.25 -317.23 -1.67 -21.93 16 14 C 0.21 7.83 6.26 38.13 0.24 8.07 16 15 C -0.20 -7.55 8.65 22.42 0.19 -7.36 16 16 C -0.05 -1.81 10.03 22.23 0.22 -1.59 16 17 C -0.21 -9.41 9.99 22.41 0.22 -9.19 16 18 C 0.14 6.89 6.65 22.56 0.15 7.04 16 19 O -0.23 -13.44 9.76 -22.73 -0.22 -13.66 16 20 C -0.41 -23.59 9.49 67.92 0.64 -22.94 16 21 H 0.10 5.30 5.20 -2.91 -0.02 5.29 16 22 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 23 N -0.92 -55.99 13.67 21.61 0.30 -55.70 16 24 Si 1.02 41.62 29.55 68.60 2.03 43.65 16 25 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 27 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 28 C -0.26 -11.44 9.08 22.51 0.20 -11.23 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.03 6.42 -2.39 -0.02 1.01 16 31 H 0.07 0.98 7.23 -2.39 -0.02 0.96 16 32 H 0.08 0.77 6.36 -2.39 -0.02 0.75 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 1.16 7.67 -2.39 -0.02 1.14 16 38 H 0.10 1.22 5.79 -2.38 -0.01 1.21 16 39 H 0.42 9.71 6.38 -92.71 -0.59 9.12 16 40 H 0.13 4.66 6.48 -2.91 -0.02 4.64 16 41 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 43 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.13 5.52 5.64 -2.91 -0.02 5.50 16 Total: -1.00 -76.45 353.79 3.45 -73.00 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.45 Total: 32.44 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 6.31 Total: -11.11 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -3.57 Total: -93.51 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.77 Total: -44.47 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -76.45 3.45 -73.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272317329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.416 kcal (2) G-P(sol) polarization free energy of solvation -76.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds