Wall clock time and date at job start Tue Mar 31 2020 12:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47400 * 2 1 4 4 O 1.45193 * 109.47398 * 179.97438 * 3 2 1 5 5 C 1.34751 * 117.00293 * 180.02562 * 4 3 2 6 6 O 1.21514 * 119.99674 * 359.97438 * 5 4 3 7 7 C 1.47446 * 120.00248 * 179.97438 * 5 4 3 8 8 C 1.39818 * 120.08038 * 0.28971 * 7 5 4 9 9 C 1.37633 * 119.91772 * 180.24972 * 8 7 5 10 10 C 1.39148 * 120.08151 * 359.45881 * 9 8 7 11 11 N 1.39399 * 119.92067 * 180.29743 * 10 9 8 12 12 C 1.34776 * 120.00250 * 144.84322 * 11 10 9 13 13 O 1.21575 * 119.99927 * 4.56914 * 12 11 10 14 14 N 1.34776 * 120.00023 * 184.57671 * 12 11 10 15 15 C 1.46502 * 120.00070 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47101 * 179.97438 * 15 14 12 17 17 C 1.50711 * 109.46706 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00027 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99386 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00444 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99691 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47224 * 59.99964 * 21 19 17 23 23 H 1.48495 * 109.47527 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47418 * 300.00313 * 21 19 17 25 25 C 1.39156 * 120.15949 * 0.27342 * 10 9 8 26 26 C 1.37636 * 120.07727 * 359.97438 * 25 10 9 27 27 H 1.08997 * 109.46841 * 299.99934 * 1 2 3 28 28 H 1.08997 * 109.46998 * 60.00212 * 1 2 3 29 29 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47502 * 239.99912 * 2 1 3 31 31 H 1.09011 * 109.47029 * 119.99910 * 2 1 3 32 32 H 1.09002 * 109.46865 * 59.99522 * 3 2 1 33 33 H 1.09003 * 109.47106 * 300.00242 * 3 2 1 34 34 H 1.08001 * 120.03547 * 0.02562 * 8 7 5 35 35 H 1.08005 * 119.95845 * 179.73299 * 9 8 7 36 36 H 0.97001 * 120.00073 * 324.83840 * 11 10 9 37 37 H 0.97000 * 120.00527 * 359.97438 * 14 12 11 38 38 H 1.09008 * 109.47232 * 299.99779 * 15 14 12 39 39 H 1.08997 * 109.47430 * 59.99512 * 15 14 12 40 40 H 1.08999 * 109.47137 * 299.99193 * 16 15 14 41 41 H 1.08999 * 109.47724 * 60.00172 * 16 15 14 42 42 H 0.97000 * 119.99914 * 180.02562 * 20 19 17 43 43 H 1.07998 * 119.95767 * 180.02562 * 25 10 9 44 44 H 1.08001 * 120.03829 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4920 1.4425 0.0006 5 6 4.1038 2.6431 0.0012 6 8 3.4420 3.6622 0.0008 7 6 5.5763 2.7202 0.0024 8 6 6.3394 1.5487 -0.0032 9 6 7.7136 1.6246 0.0032 10 6 8.3436 2.8653 0.0038 11 7 9.7357 2.9382 0.0040 12 6 10.3588 3.9267 -0.6676 13 8 9.7073 4.8018 -1.2040 14 7 11.7043 3.9451 -0.7446 15 6 12.3816 5.0193 -1.4751 16 6 13.8952 4.8055 -1.4088 17 6 14.5918 5.9103 -2.1608 18 1 14.0129 6.6868 -2.6386 19 6 15.9683 5.9295 -2.2388 20 7 16.6732 4.9836 -1.6574 21 14 16.8319 7.2991 -3.1702 22 1 16.4890 8.6074 -2.5571 23 1 18.3009 7.0917 -3.1061 24 1 16.3923 7.2869 -4.5886 25 6 7.5874 4.0334 0.0037 26 6 6.2127 3.9652 0.0025 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 5.8510 0.5854 -0.0088 35 1 8.3038 0.7200 0.0032 36 1 10.2560 2.2776 0.4875 37 1 12.2242 3.2470 -0.3165 38 1 12.0584 5.0108 -2.5161 39 1 12.1305 5.9795 -1.0246 40 1 14.2181 4.8144 -0.3678 41 1 14.1467 3.8453 -1.8591 42 1 17.6416 4.9973 -1.7120 43 1 8.0797 4.9946 0.0038 44 1 5.6264 4.8722 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273202552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:54 Heat of formation + Delta-G solvation = -105.185359 kcal Electronic energy + Delta-G solvation = -24910.733106 eV Core-core repulsion = 21020.681722 eV Total energy + Delta-G solvation = -3890.051384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92527 -40.37746 -38.59111 -36.91102 -35.27830 -34.66599 -34.25066 -32.93762 -31.22612 -30.61965 -29.24073 -27.15512 -25.11120 -23.84428 -23.13785 -21.99409 -21.45604 -20.94363 -20.71193 -18.58840 -17.97638 -17.69112 -17.10285 -16.93453 -16.38166 -15.61975 -15.11665 -15.07303 -14.84149 -14.69774 -14.49695 -14.17332 -13.84512 -13.69042 -13.36503 -13.25767 -13.08040 -12.81517 -12.67872 -12.48628 -12.32125 -11.65532 -11.61312 -11.44432 -11.27190 -11.08150 -10.82430 -10.75044 -10.69712 -10.57949 -10.35883 -10.03517 -9.65117 -9.35182 -9.18748 -8.74987 -8.46756 -8.23434 -6.13824 -4.16997 0.49179 1.21031 2.31572 2.35468 2.67980 3.23386 3.28962 3.32999 3.36425 3.67374 4.26648 4.30625 4.42237 4.43432 4.50874 4.64076 4.74261 4.79206 4.97062 5.06688 5.09237 5.14539 5.23545 5.25461 5.37027 5.46785 5.57332 5.66768 5.79519 5.88268 6.02934 6.10884 6.17987 6.22942 6.27678 6.34125 6.65465 6.77090 6.79493 6.94860 7.47085 7.54263 7.54546 7.84139 8.05732 8.23581 8.64800 8.88661 9.48222 10.97683 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046100 B = 0.001644 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.227540 B =17029.486818 C =17365.571104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.066 3.934 4 O -0.356 6.356 5 C 0.514 3.486 6 O -0.512 6.512 7 C -0.160 4.160 8 C -0.039 4.039 9 C -0.169 4.169 10 C 0.217 3.783 11 N -0.691 5.691 12 C 0.696 3.304 13 O -0.575 6.575 14 N -0.729 5.729 15 C 0.137 3.863 16 C 0.013 3.987 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.137 4.137 26 C -0.031 4.031 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.409 0.591 37 H 0.396 0.604 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.154 0.846 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.007 -13.355 6.931 30.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.008 4.008 4 O -0.273 6.273 5 C 0.360 3.640 6 O -0.401 6.401 7 C -0.162 4.162 8 C -0.058 4.058 9 C -0.190 4.190 10 C 0.119 3.881 11 N -0.338 5.338 12 C 0.396 3.604 13 O -0.452 6.452 14 N -0.381 5.381 15 C 0.015 3.985 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.157 4.157 26 C -0.050 4.050 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.245 0.755 37 H 0.230 0.770 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.171 0.829 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.503 -12.271 6.412 29.901 hybrid contribution 1.027 0.063 -0.079 1.032 sum -25.475 -12.208 6.333 28.950 Atomic orbital electron populations 1.21692 0.94130 1.02580 1.02386 1.21523 0.96156 0.94675 1.03816 1.23136 0.76239 0.98621 1.02756 1.86521 1.23376 1.32956 1.84437 1.21144 0.89122 0.81224 0.72498 1.90838 1.66876 1.36037 1.46374 1.19004 0.88683 0.95087 1.13421 1.21148 0.92879 0.97847 0.93903 1.20864 0.94701 0.96311 1.07131 1.17847 0.82263 0.93870 0.94131 1.42741 1.04807 1.32042 1.54203 1.16071 0.82970 0.81813 0.79514 1.90912 1.64711 1.38197 1.51393 1.45608 1.03615 1.31221 1.57698 1.21717 0.94740 0.87372 0.94658 1.19333 0.86945 0.98135 0.98039 1.20994 0.91479 1.09891 1.33858 0.92212 1.24984 0.97530 0.96132 0.95528 1.69940 1.06478 1.33087 1.43768 0.86558 0.78265 0.82225 0.80417 1.20071 1.21225 1.20083 1.21385 0.92830 0.99384 1.02122 1.21156 0.94037 0.96633 0.93160 0.92295 0.92267 0.91619 0.90684 0.90712 0.91169 0.91141 0.84284 0.84771 0.75488 0.77006 0.92385 0.92367 0.95872 0.95884 0.92749 0.82889 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.12 -0.66 6.31 -26.73 -0.17 -0.83 16 3 C 0.07 0.52 5.48 37.16 0.20 0.72 16 4 O -0.36 -3.55 9.46 -40.63 -0.38 -3.93 16 5 C 0.51 6.17 7.89 34.48 0.27 6.44 16 6 O -0.51 -7.36 16.13 -19.28 -0.31 -7.67 16 7 C -0.16 -1.82 5.88 -104.97 -0.62 -2.44 16 8 C -0.04 -0.37 9.60 -39.21 -0.38 -0.74 16 9 C -0.17 -1.58 9.94 -39.46 -0.39 -1.98 16 10 C 0.22 2.58 6.30 -83.74 -0.53 2.05 16 11 N -0.69 -8.05 5.32 -14.22 -0.08 -8.13 16 12 C 0.70 11.12 8.40 -86.92 -0.73 10.39 16 13 O -0.58 -11.28 13.75 5.30 0.07 -11.20 16 14 N -0.73 -11.73 5.56 -65.23 -0.36 -12.09 16 15 C 0.14 2.78 5.61 -4.04 -0.02 2.76 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 17 C -0.52 -14.16 9.11 -34.43 -0.31 -14.47 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 21 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.14 -1.81 8.66 -39.46 -0.34 -2.15 16 26 C -0.03 -0.38 9.58 -39.21 -0.38 -0.75 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.14 1.01 7.60 -52.49 -0.40 0.61 16 35 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.41 3.30 8.83 -40.82 -0.36 2.94 16 37 H 0.40 5.30 8.49 -40.82 -0.35 4.96 16 38 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.15 2.30 6.20 -52.49 -0.33 1.97 16 44 H 0.14 1.64 7.64 -52.49 -0.40 1.23 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -32.84 380.02 -9.33 -42.17 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.45 Total: 3.49 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.26 Total: 0.46 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.30 Total: -45.05 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.62 Total: -22.80 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.84 -9.33 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273202552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.018 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds