Wall clock time and date at job start Tue Mar 31 2020 13:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 110.38674 * 2 1 4 4 C 1.54384 * 110.34243 * 237.77115 * 2 1 3 5 5 N 1.48141 * 104.61797 * 264.99820 * 4 2 1 6 6 C 1.34774 * 127.84145 * 140.41993 * 5 4 2 7 7 O 1.21596 * 119.99815 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00263 * 0.02606 * 6 5 4 9 9 C 1.39940 * 120.00331 * 174.74872 * 8 6 5 10 10 C 1.38962 * 120.03675 * 146.43172 * 9 8 6 11 11 C 1.38159 * 120.06607 * 179.97438 * 10 9 8 12 12 C 1.38170 * 120.13842 * 0.02562 * 11 10 9 13 13 C 1.38901 * 120.07044 * 0.02562 * 12 11 10 14 14 O 1.35755 * 120.03490 * 179.97438 * 13 12 11 15 15 C 1.34831 * 116.99529 * 5.91366 * 14 13 12 16 16 H 1.07998 * 120.00247 * 5.40795 * 15 14 13 17 17 C 1.38656 * 119.99510 * 185.40932 * 15 14 13 18 18 N 1.31558 * 120.00149 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99826 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47121 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46997 * 120.00046 * 19 17 15 22 22 H 1.48500 * 109.46994 * 239.99774 * 19 17 15 23 23 C 1.38710 * 120.03515 * 326.14899 * 9 8 6 24 24 C 1.48314 * 104.39013 * 320.47173 * 5 4 2 25 25 C 1.54281 * 110.34370 * 122.23201 * 2 1 3 26 26 H 1.08999 * 110.34221 * 359.89452 * 25 2 1 27 27 C 1.52999 * 110.34406 * 237.74394 * 25 2 1 28 28 O 1.42904 * 109.47140 * 176.47370 * 27 25 2 29 29 H 1.09000 * 109.46707 * 297.76644 * 1 2 3 30 30 H 1.08998 * 109.47286 * 57.76651 * 1 2 3 31 31 H 1.09001 * 109.46864 * 177.76602 * 1 2 3 32 32 H 1.09008 * 110.40816 * 23.77669 * 4 2 1 33 33 H 1.09000 * 110.40972 * 146.21049 * 4 2 1 34 34 H 0.97003 * 119.99552 * 354.73790 * 8 6 5 35 35 H 1.08000 * 119.96813 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.92757 * 180.02562 * 11 10 9 37 37 H 1.08005 * 119.96198 * 180.02562 * 12 11 10 38 38 H 0.96998 * 119.99862 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.06534 * 359.97438 * 23 9 8 40 40 H 1.09003 * 110.38335 * 280.73538 * 24 5 4 41 41 H 1.09002 * 110.50787 * 158.25246 * 24 5 4 42 42 H 1.09001 * 109.47227 * 56.47308 * 27 25 2 43 43 H 1.09003 * 109.47025 * 296.47377 * 27 25 2 44 44 H 0.96693 * 113.99745 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0668 -0.7720 -1.2245 5 7 2.3139 -2.1437 -0.7228 6 6 2.0774 -3.3104 -1.3547 7 8 2.3363 -4.3633 -0.8043 8 7 1.5540 -3.3101 -2.5966 9 6 1.4106 -4.5138 -3.2958 10 6 0.3402 -4.6904 -4.1642 11 6 0.1982 -5.8784 -4.8552 12 6 1.1191 -6.8943 -4.6850 13 6 2.1906 -6.7242 -3.8176 14 8 3.0947 -7.7230 -3.6505 15 6 2.9654 -8.8048 -4.4449 16 1 2.2249 -8.8121 -5.2310 17 6 3.7833 -9.9078 -4.2525 18 7 4.6856 -9.8987 -3.2952 19 14 3.6047 -11.4063 -5.3535 20 1 2.5270 -11.1655 -6.3463 21 1 4.8850 -11.6541 -6.0637 22 1 3.2605 -12.5904 -4.5259 23 6 2.3399 -5.5296 -3.1273 24 6 2.8796 -1.9437 0.6336 25 6 2.0664 -0.7715 1.2237 26 1 1.2399 -1.1489 1.8257 27 6 2.9692 0.1306 2.0674 28 8 3.3890 -0.5753 3.2369 29 1 -0.3633 0.4788 0.9093 30 1 -0.3634 0.5481 -0.8693 31 1 -0.3633 -1.0269 -0.0401 32 1 1.3223 -0.7869 -2.0206 33 1 2.9950 -0.3241 -1.5793 34 1 1.2766 -2.4755 -3.0058 35 1 -0.3815 -3.8984 -4.2991 36 1 -0.6343 -6.0131 -5.5299 37 1 1.0056 -7.8216 -5.2269 38 1 5.2575 -10.6705 -3.1604 39 1 3.1754 -5.3928 -2.4567 40 1 3.9352 -1.6798 0.5696 41 1 2.7472 -2.8407 1.2386 42 1 2.4181 1.0242 2.3606 43 1 3.8434 0.4183 1.4833 44 1 3.9659 -0.0629 3.8196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277051362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:22 Heat of formation + Delta-G solvation = -67.887612 kcal Electronic energy + Delta-G solvation = -26560.829143 eV Core-core repulsion = 22672.395111 eV Total energy + Delta-G solvation = -3888.434032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.61103 -39.23045 -38.27978 -36.76669 -36.28698 -34.02834 -32.89200 -32.17830 -30.81612 -29.38150 -28.36733 -26.78883 -25.85784 -25.16163 -22.79229 -21.94782 -21.32089 -20.28371 -19.81337 -18.39915 -17.98048 -17.45855 -16.97559 -16.31511 -15.80227 -15.47382 -15.00703 -14.84042 -14.79591 -14.21719 -13.98540 -13.89839 -13.65717 -13.51562 -13.45828 -13.27143 -12.76886 -12.57872 -12.43028 -12.13834 -11.71223 -11.68361 -11.45019 -11.37718 -11.25138 -11.09376 -10.95710 -10.89716 -10.72219 -10.38830 -10.35025 -9.92020 -9.67412 -9.21326 -8.78210 -8.74817 -7.57923 -7.10627 -6.35815 -3.94964 2.14228 2.41850 2.58009 3.17601 3.18933 3.24942 3.38964 3.68058 3.93551 4.06448 4.14613 4.32176 4.58875 4.67200 4.75965 4.84850 4.97619 5.08293 5.16193 5.16428 5.19612 5.27443 5.37344 5.44930 5.55083 5.63243 5.68361 5.80215 5.82124 5.86141 5.90385 6.12367 6.17739 6.30105 6.46569 6.66147 6.93584 7.09633 7.14641 7.26134 7.31118 7.40985 7.55310 7.88934 8.05329 8.09361 8.74365 9.09055 9.81647 10.82311 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.002662 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.148785 B =10515.452406 C =11679.092918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.104 3.896 5 N -0.643 5.643 6 C 0.722 3.278 7 O -0.555 6.555 8 N -0.680 5.680 9 C 0.196 3.804 10 C -0.238 4.238 11 C -0.058 4.058 12 C -0.247 4.247 13 C 0.169 3.831 14 O -0.174 6.174 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.187 4.187 24 C 0.136 3.864 25 C -0.101 4.101 26 H 0.090 0.910 27 C 0.086 3.914 28 O -0.571 6.571 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.269 0.731 39 H 0.129 0.871 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 24.477 5.707 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.382 5.382 6 C 0.425 3.575 7 O -0.430 6.430 8 N -0.328 5.328 9 C 0.103 3.897 10 C -0.259 4.259 11 C -0.076 4.076 12 C -0.267 4.267 13 C 0.115 3.885 14 O -0.077 6.077 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.209 4.209 24 C 0.012 3.988 25 C -0.121 4.121 26 H 0.109 0.891 27 C 0.008 3.992 28 O -0.376 6.376 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.234 0.766 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.147 0.853 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.074 22.929 6.058 24.482 hybrid contribution 0.012 0.265 -0.521 0.585 sum -6.062 23.195 5.537 24.605 Atomic orbital electron populations 1.21859 0.93811 1.02513 1.01999 1.22070 0.96775 0.99172 0.93774 0.89417 1.22424 1.00522 0.82536 0.96495 1.48091 1.67903 1.03848 1.18398 1.15358 0.78675 0.82585 0.80876 1.91049 1.57112 1.28754 1.66051 1.42491 1.66107 1.09109 1.15048 1.16939 0.94098 0.85158 0.93551 1.20209 0.99595 0.99744 1.06368 1.20478 0.97421 0.92378 0.97366 1.21166 0.98171 1.01206 1.06110 1.19113 0.88466 0.88911 0.92049 1.84015 1.44766 1.24149 1.54817 1.21384 1.21276 0.92180 1.11831 0.88987 1.25307 0.95574 0.98333 0.97429 1.70071 1.19303 1.30380 1.29797 0.85647 0.78491 0.80171 0.79084 1.19105 1.20215 1.20189 1.20048 1.01990 0.92617 1.06233 1.22166 0.96294 0.98596 0.81704 1.22215 0.98696 0.95685 0.95488 0.89124 1.22228 0.96888 0.93606 0.86471 1.86530 1.70845 1.44691 1.35562 0.92253 0.92189 0.92175 0.90554 0.90886 0.76575 0.87517 0.87059 0.85466 0.92124 0.85278 0.91190 0.89354 0.93330 0.93254 0.77294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.90 37.16 0.33 -0.58 16 2 C -0.10 -0.62 3.31 -89.22 -0.30 -0.92 16 3 H 0.09 0.37 7.71 -51.93 -0.40 -0.03 16 4 C 0.10 0.83 6.49 -2.41 -0.02 0.81 16 5 N -0.64 -8.24 3.32 -174.88 -0.58 -8.82 16 6 C 0.72 12.70 8.30 -86.93 -0.72 11.98 16 7 O -0.56 -12.76 14.33 5.28 0.08 -12.69 16 8 N -0.68 -10.85 5.31 -14.24 -0.08 -10.93 16 9 C 0.20 3.89 6.27 -83.71 -0.52 3.37 16 10 C -0.24 -4.25 9.96 -39.34 -0.39 -4.64 16 11 C -0.06 -1.09 10.03 -39.64 -0.40 -1.48 16 12 C -0.25 -5.62 9.13 -39.36 -0.36 -5.98 16 13 C 0.17 4.42 6.64 -39.14 -0.26 4.16 16 14 O -0.17 -5.31 9.76 0.03 0.00 -5.31 16 15 C -0.39 -11.38 9.44 30.89 0.29 -11.08 16 16 H 0.09 2.46 5.29 -52.49 -0.28 2.19 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -26.37 13.67 55.48 0.76 -25.61 16 19 Si 0.94 21.21 29.55 -169.99 -5.02 16.18 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.19 -4.54 8.59 -39.21 -0.34 -4.87 16 24 C 0.14 1.59 6.48 -2.32 -0.02 1.57 16 25 C -0.10 -0.84 2.98 -89.22 -0.27 -1.10 16 26 H 0.09 0.86 7.71 -51.93 -0.40 0.46 16 27 C 0.09 0.55 6.15 37.16 0.23 0.77 16 28 O -0.57 -4.52 13.52 -35.23 -0.48 -5.00 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.51 6.54 -51.92 -0.34 0.18 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.40 4.68 7.20 -40.82 -0.29 4.39 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.13 2.87 5.71 -52.48 -0.30 2.57 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 39 H 0.13 3.39 6.45 -52.48 -0.34 3.05 16 40 H 0.07 0.77 7.78 -51.93 -0.40 0.36 16 41 H 0.09 1.27 7.89 -51.93 -0.41 0.86 16 42 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.05 0.26 8.02 -51.93 -0.42 -0.15 16 44 H 0.38 1.26 9.12 45.56 0.42 1.67 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -37.59 363.51 -7.93 -45.53 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.26 Total: 8.18 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.83 Total: -7.01 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.10 Total: -45.36 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.40 Total: -23.00 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.59 -7.93 -45.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277051362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.362 kcal (2) G-P(sol) polarization free energy of solvation -37.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds