Wall clock time and date at job start Tue Mar 31 2020 13:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 110.38674 * 2 1 4 4 C 1.54384 * 110.34243 * 237.77115 * 2 1 3 5 5 N 1.48141 * 104.61797 * 264.99820 * 4 2 1 6 6 C 1.34774 * 127.84145 * 140.41993 * 5 4 2 7 7 O 1.21596 * 119.99815 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00263 * 0.02606 * 6 5 4 9 9 C 1.39940 * 120.00331 * 174.74872 * 8 6 5 10 10 C 1.38962 * 120.03675 * 146.43172 * 9 8 6 11 11 C 1.38159 * 120.06607 * 179.97438 * 10 9 8 12 12 C 1.38170 * 120.13842 * 0.02562 * 11 10 9 13 13 C 1.38901 * 120.07044 * 0.02562 * 12 11 10 14 14 O 1.35755 * 120.03490 * 179.97438 * 13 12 11 15 15 C 1.34831 * 116.99529 * 5.91366 * 14 13 12 16 16 H 1.07998 * 120.00247 * 5.40795 * 15 14 13 17 17 C 1.38656 * 119.99510 * 185.40932 * 15 14 13 18 18 N 1.31558 * 120.00149 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99826 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47121 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46997 * 120.00046 * 19 17 15 22 22 H 1.48500 * 109.46994 * 239.99774 * 19 17 15 23 23 C 1.38710 * 120.03515 * 326.14899 * 9 8 6 24 24 C 1.48314 * 104.39013 * 320.47173 * 5 4 2 25 25 C 1.54281 * 110.34370 * 122.23201 * 2 1 3 26 26 H 1.08999 * 110.34221 * 359.89452 * 25 2 1 27 27 C 1.52999 * 110.34406 * 237.74394 * 25 2 1 28 28 O 1.42904 * 109.47140 * 176.47370 * 27 25 2 29 29 H 1.09000 * 109.46707 * 297.76644 * 1 2 3 30 30 H 1.08998 * 109.47286 * 57.76651 * 1 2 3 31 31 H 1.09001 * 109.46864 * 177.76602 * 1 2 3 32 32 H 1.09008 * 110.40816 * 23.77669 * 4 2 1 33 33 H 1.09000 * 110.40972 * 146.21049 * 4 2 1 34 34 H 0.97003 * 119.99552 * 354.73790 * 8 6 5 35 35 H 1.08000 * 119.96813 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.92757 * 180.02562 * 11 10 9 37 37 H 1.08005 * 119.96198 * 180.02562 * 12 11 10 38 38 H 0.96998 * 119.99862 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.06534 * 359.97438 * 23 9 8 40 40 H 1.09003 * 110.38335 * 280.73538 * 24 5 4 41 41 H 1.09002 * 110.50787 * 158.25246 * 24 5 4 42 42 H 1.09001 * 109.47227 * 56.47308 * 27 25 2 43 43 H 1.09003 * 109.47025 * 296.47377 * 27 25 2 44 44 H 0.96693 * 113.99745 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0668 -0.7720 -1.2245 5 7 2.3139 -2.1437 -0.7228 6 6 2.0774 -3.3104 -1.3547 7 8 2.3363 -4.3633 -0.8043 8 7 1.5540 -3.3101 -2.5966 9 6 1.4106 -4.5138 -3.2958 10 6 0.3402 -4.6904 -4.1642 11 6 0.1982 -5.8784 -4.8552 12 6 1.1191 -6.8943 -4.6850 13 6 2.1906 -6.7242 -3.8176 14 8 3.0947 -7.7230 -3.6505 15 6 2.9654 -8.8048 -4.4449 16 1 2.2249 -8.8121 -5.2310 17 6 3.7833 -9.9078 -4.2525 18 7 4.6856 -9.8987 -3.2952 19 14 3.6047 -11.4063 -5.3535 20 1 2.5270 -11.1655 -6.3463 21 1 4.8850 -11.6541 -6.0637 22 1 3.2605 -12.5904 -4.5259 23 6 2.3399 -5.5296 -3.1273 24 6 2.8796 -1.9437 0.6336 25 6 2.0664 -0.7715 1.2237 26 1 1.2399 -1.1489 1.8257 27 6 2.9692 0.1306 2.0674 28 8 3.3890 -0.5753 3.2369 29 1 -0.3633 0.4788 0.9093 30 1 -0.3634 0.5481 -0.8693 31 1 -0.3633 -1.0269 -0.0401 32 1 1.3223 -0.7869 -2.0206 33 1 2.9950 -0.3241 -1.5793 34 1 1.2766 -2.4755 -3.0058 35 1 -0.3815 -3.8984 -4.2991 36 1 -0.6343 -6.0131 -5.5299 37 1 1.0056 -7.8216 -5.2269 38 1 5.2575 -10.6705 -3.1604 39 1 3.1754 -5.3928 -2.4567 40 1 3.9352 -1.6798 0.5696 41 1 2.7472 -2.8407 1.2386 42 1 2.4181 1.0242 2.3606 43 1 3.8434 0.4183 1.4833 44 1 3.9659 -0.0629 3.8196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277051362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:21 Heat of formation + Delta-G solvation = -97.937004 kcal Electronic energy + Delta-G solvation = -26562.132182 eV Core-core repulsion = 22672.395111 eV Total energy + Delta-G solvation = -3889.737071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87429 -40.68735 -39.65537 -38.17315 -37.26932 -35.60050 -34.27468 -33.81319 -31.59074 -31.08431 -29.94119 -27.49906 -27.35546 -26.70363 -23.96816 -23.21735 -22.91500 -21.21671 -20.94270 -19.99275 -19.45219 -18.80091 -18.06209 -17.32696 -17.17690 -16.74974 -16.45406 -16.28053 -16.03423 -15.82055 -15.52285 -15.42991 -14.69407 -14.60863 -14.36145 -14.28830 -14.16976 -13.90040 -13.60601 -13.43945 -13.15332 -12.96271 -12.87703 -12.69023 -12.38310 -12.29258 -12.07977 -11.96808 -11.86221 -11.61033 -11.47938 -11.36786 -11.04821 -10.84165 -10.77395 -9.89576 -9.30563 -8.84396 -8.46508 -6.16414 0.45135 0.70664 1.33077 1.35800 1.44335 1.54661 1.98045 2.17959 2.79170 2.84031 3.17774 3.20973 3.49191 3.54277 3.66161 4.02677 4.13658 4.17330 4.25245 4.36937 4.39221 4.42395 4.49495 4.56700 4.60795 4.67856 4.71914 4.73151 4.80753 4.87193 4.95040 5.05569 5.09668 5.10961 5.12491 5.26952 5.39261 5.45931 5.48755 5.63433 5.74268 5.96072 6.03375 6.21135 6.81276 6.96270 6.96952 7.40047 7.80453 8.77951 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.002662 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.148785 B =10515.452406 C =11679.092918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.125 0.875 4 C 0.095 3.905 5 N -0.638 5.638 6 C 0.714 3.286 7 O -0.623 6.623 8 N -0.662 5.662 9 C 0.203 3.797 10 C -0.205 4.205 11 C -0.045 4.045 12 C -0.255 4.255 13 C 0.129 3.871 14 O -0.237 6.237 15 C -0.412 4.412 16 H 0.108 0.892 17 C -0.030 4.030 18 N -0.926 5.926 19 Si 1.026 2.974 20 H -0.245 1.245 21 H -0.268 1.268 22 H -0.270 1.270 23 C -0.215 4.215 24 C 0.128 3.872 25 C -0.095 4.095 26 H 0.072 0.928 27 C 0.087 3.913 28 O -0.601 6.601 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.424 0.576 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.125 0.875 38 H 0.272 0.728 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 28.342 3.541 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.143 0.857 4 C -0.027 4.027 5 N -0.376 5.376 6 C 0.416 3.584 7 O -0.502 6.502 8 N -0.312 5.312 9 C 0.108 3.892 10 C -0.225 4.225 11 C -0.063 4.063 12 C -0.275 4.275 13 C 0.078 3.922 14 O -0.144 6.144 15 C -0.488 4.488 16 H 0.125 0.875 17 C -0.226 4.226 18 N -0.565 5.565 19 Si 0.844 3.156 20 H -0.168 1.168 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.237 4.237 24 C 0.005 3.995 25 C -0.115 4.115 26 H 0.091 0.909 27 C 0.009 3.991 28 O -0.410 6.410 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.264 0.736 35 H 0.182 0.818 36 H 0.181 0.819 37 H 0.143 0.857 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.161 26.959 3.889 28.737 hybrid contribution 0.811 -0.558 0.255 1.017 sum -8.350 26.401 4.144 27.998 Atomic orbital electron populations 1.21864 0.93588 1.01189 1.03424 1.22097 0.96822 1.00278 0.91340 0.85659 1.22884 1.02422 0.79469 0.97883 1.48122 1.66270 1.04531 1.18638 1.15641 0.78470 0.83050 0.81214 1.91017 1.59692 1.31858 1.67677 1.42220 1.65659 1.08976 1.14320 1.17100 0.93363 0.85226 0.93493 1.20842 0.98311 1.00502 1.02882 1.21044 0.97168 0.91033 0.97063 1.21324 0.98133 1.02637 1.05438 1.19638 0.89740 0.88747 0.94102 1.83978 1.47655 1.25804 1.56973 1.21968 1.21935 0.92406 1.12504 0.87486 1.26766 0.94782 1.01899 0.99190 1.70247 1.21395 1.31909 1.32929 0.84440 0.79285 0.74832 0.77006 1.16810 1.19279 1.19498 1.20038 1.02876 0.94154 1.06645 1.22313 0.97594 0.98534 0.81030 1.22189 0.98016 0.94834 0.96411 0.90929 1.22314 0.97377 0.93424 0.85955 1.86489 1.71612 1.46345 1.36591 0.91448 0.90163 0.94885 0.88567 0.88738 0.73569 0.81761 0.81901 0.85729 0.91919 0.89145 0.90421 0.93597 0.90618 0.91683 0.75154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.90 71.98 0.64 -0.68 16 2 C -0.09 -0.77 3.31 -9.89 -0.03 -0.81 16 3 H 0.13 0.33 7.71 -2.39 -0.02 0.31 16 4 C 0.09 1.20 6.49 86.53 0.56 1.76 16 5 N -0.64 -16.20 3.32 -825.47 -2.74 -18.94 16 6 C 0.71 25.85 8.30 179.06 1.49 27.33 16 7 O -0.62 -31.11 14.33 -4.02 -0.06 -31.16 16 8 N -0.66 -20.23 5.31 -317.23 -1.69 -21.91 16 9 C 0.20 7.88 6.27 38.13 0.24 8.12 16 10 C -0.20 -6.38 9.96 22.42 0.22 -6.16 16 11 C -0.04 -1.51 10.03 22.23 0.22 -1.29 16 12 C -0.26 -11.63 9.13 22.41 0.20 -11.43 16 13 C 0.13 7.15 6.64 22.56 0.15 7.30 16 14 O -0.24 -15.76 9.76 -22.81 -0.22 -15.98 16 15 C -0.41 -25.50 9.44 67.92 0.64 -24.86 16 16 H 0.11 5.96 5.29 -2.91 -0.02 5.94 16 17 C -0.03 -1.80 5.49 84.83 0.47 -1.33 16 18 N -0.93 -60.91 13.67 21.61 0.30 -60.61 16 19 Si 1.03 44.94 29.55 68.60 2.03 46.97 16 20 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 C -0.22 -11.10 8.59 22.51 0.19 -10.90 16 24 C 0.13 3.11 6.48 86.50 0.56 3.67 16 25 C -0.09 -1.44 2.98 -9.89 -0.03 -1.47 16 26 H 0.07 1.37 7.71 -2.39 -0.02 1.36 16 27 C 0.09 0.88 6.15 71.98 0.44 1.32 16 28 O -0.60 -9.03 13.52 -148.98 -2.01 -11.05 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 0.85 6.54 -2.38 -0.02 0.83 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.42 8.36 7.20 -92.71 -0.67 7.69 16 35 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 37 H 0.12 5.64 5.71 -2.91 -0.02 5.63 16 38 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 39 H 0.09 5.30 6.45 -2.91 -0.02 5.28 16 40 H 0.08 1.74 7.78 -2.39 -0.02 1.72 16 41 H 0.05 1.48 7.89 -2.39 -0.02 1.46 16 42 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.06 0.47 8.02 -2.39 -0.02 0.45 16 44 H 0.40 2.17 9.12 -74.06 -0.68 1.49 16 Total: -1.00 -95.94 363.51 1.28 -94.66 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.30 Total: 27.43 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 5.97 Total: -9.40 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -4.13 Total: -101.46 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -2.29 Total: -58.19 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -95.94 1.28 -94.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277051362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.279 kcal (2) G-P(sol) polarization free energy of solvation -95.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds