Wall clock time and date at job start Tue Mar 31 2020 12:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.64177 * 2 1 4 4 C 1.55159 * 110.71738 * 123.14101 * 2 1 3 5 5 C 1.55389 * 101.36541 * 153.94939 * 4 2 1 6 6 N 1.47423 * 104.86959 * 323.01347 * 5 4 2 7 7 C 1.34784 * 125.64782 * 204.09476 * 6 5 4 8 8 O 1.21581 * 120.00010 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99847 * 0.04725 * 7 6 5 10 10 C 1.39945 * 119.99843 * 174.73404 * 9 7 6 11 11 C 1.38955 * 120.03632 * 326.15183 * 10 9 7 12 12 C 1.38162 * 120.06651 * 179.76714 * 11 10 9 13 13 C 1.38168 * 120.13711 * 0.51129 * 12 11 10 14 14 C 1.38908 * 120.06795 * 359.74781 * 13 12 11 15 15 O 1.35758 * 120.03157 * 180.02562 * 14 13 12 16 16 C 1.34832 * 116.99608 * 185.88511 * 15 14 13 17 17 H 1.07995 * 120.00314 * 5.40644 * 16 15 14 18 18 C 1.38657 * 119.99674 * 185.40478 * 16 15 14 19 19 N 1.31564 * 119.99758 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99923 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47201 * 90.00355 * 20 18 16 22 22 H 1.48509 * 109.47036 * 209.99907 * 20 18 16 23 23 H 1.48499 * 109.47296 * 329.99864 * 20 18 16 24 24 C 1.38702 * 120.03247 * 146.43182 * 10 9 7 25 25 C 1.47015 * 108.70735 * 24.13545 * 6 5 4 26 26 H 1.08995 * 109.88731 * 239.52046 * 25 6 5 27 27 C 1.53006 * 110.01493 * 118.42515 * 25 6 5 28 28 O 1.42907 * 109.46646 * 67.11635 * 27 25 6 29 29 H 1.08993 * 109.47177 * 180.70270 * 1 2 3 30 30 H 1.09000 * 109.47142 * 300.70521 * 1 2 3 31 31 H 1.08997 * 109.46502 * 60.70078 * 1 2 3 32 32 H 1.09002 * 111.00290 * 272.11811 * 4 2 1 33 33 H 1.08998 * 111.00448 * 35.96698 * 4 2 1 34 34 H 1.09004 * 110.34079 * 204.16760 * 5 4 2 35 35 H 1.08997 * 110.44470 * 81.91437 * 5 4 2 36 36 H 0.97001 * 119.99746 * 354.73539 * 9 7 6 37 37 H 1.08003 * 119.96478 * 0.02839 * 11 10 9 38 38 H 1.08003 * 119.93133 * 180.23592 * 12 11 10 39 39 H 1.07999 * 119.96494 * 179.72218 * 13 12 11 40 40 H 0.97002 * 119.99705 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.07224 * 359.95394 * 24 10 9 42 42 H 1.09000 * 109.47242 * 187.11372 * 27 25 6 43 43 H 1.09004 * 109.47088 * 307.12090 * 27 25 6 44 44 H 0.96699 * 113.99468 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7934 1.2152 5 6 3.4674 -1.2455 0.6838 6 7 3.2471 -1.5462 -0.7425 7 6 3.9957 -2.3768 -1.4950 8 8 3.7206 -2.5500 -2.6665 9 7 5.0492 -3.0158 -0.9486 10 6 5.7594 -3.9609 -1.6973 11 6 5.0955 -4.7560 -2.6235 12 6 5.7969 -5.6860 -3.3664 13 6 7.1582 -5.8359 -3.1837 14 6 7.8267 -5.0477 -2.2555 15 8 9.1644 -5.1952 -2.0769 16 6 9.7302 -4.4881 -1.0780 17 1 9.1114 -3.9094 -0.4083 18 6 11.1065 -4.5041 -0.9105 19 7 11.8603 -5.2088 -1.7266 20 14 11.8903 -3.5251 0.4739 21 1 11.9819 -4.3730 1.6895 22 1 13.2521 -3.0950 0.0666 23 1 11.0601 -2.3290 0.7660 24 6 7.1260 -4.1090 -1.5115 25 6 2.0761 -0.7892 -1.2085 26 1 1.3141 -1.4754 -1.5780 27 6 2.4868 0.1792 -2.3197 28 8 2.8811 -0.5623 -3.4759 29 1 -0.3633 -1.0275 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 -0.3632 0.5029 -0.8962 32 1 2.1820 -0.1490 2.0882 33 1 1.4468 -1.6529 1.4384 34 1 3.8031 -2.1379 1.2122 35 1 4.1969 -0.4432 0.7941 36 1 5.3149 -2.8205 -0.0363 37 1 4.0307 -4.6440 -2.7657 38 1 5.2793 -6.3002 -4.0884 39 1 7.7030 -6.5668 -3.7628 40 1 12.8231 -5.2202 -1.6092 41 1 7.6437 -3.4948 -0.7895 42 1 1.6437 0.8227 -2.5708 43 1 3.3219 0.7909 -1.9782 44 1 3.1546 -0.0113 -4.2220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277074485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:20 Heat of formation + Delta-G solvation = -90.933187 kcal Electronic energy + Delta-G solvation = -27129.320041 eV Core-core repulsion = 23239.886678 eV Total energy + Delta-G solvation = -3889.433363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81947 -40.69730 -39.42870 -37.87961 -37.18273 -35.54553 -34.27100 -33.82624 -31.27678 -30.92705 -30.19637 -28.45842 -27.26543 -24.89787 -24.34761 -23.47009 -22.88130 -21.43065 -20.73398 -19.72659 -19.43386 -18.67937 -18.04694 -17.67012 -16.98908 -16.78447 -16.29218 -16.21361 -15.72825 -15.57654 -15.49042 -15.22236 -14.86397 -14.59482 -14.47411 -14.25874 -14.08027 -13.63746 -13.56023 -13.19334 -13.16648 -12.78507 -12.69554 -12.64096 -12.52524 -12.44337 -12.11622 -11.94246 -11.68347 -11.59759 -11.43044 -11.23698 -10.93940 -10.83682 -10.69177 -9.66448 -9.29279 -8.80813 -8.45476 -6.14150 0.47617 0.72269 1.35756 1.45547 1.48449 1.53631 2.17658 2.19172 2.86464 2.90261 3.18830 3.22524 3.50205 3.53355 3.73790 4.03209 4.12697 4.15331 4.28414 4.34380 4.41649 4.44399 4.46634 4.51926 4.55847 4.63113 4.69342 4.75655 4.90649 4.99212 5.02830 5.05254 5.11833 5.12888 5.20650 5.31353 5.45486 5.49912 5.54286 5.68865 5.70751 6.02113 6.03788 6.22755 6.91438 6.95503 6.98819 7.58641 7.78788 8.77794 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.003188 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.117942 B = 8779.951185 C = 9816.730659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.103 0.897 4 C -0.115 4.115 5 C 0.082 3.918 6 N -0.630 5.630 7 C 0.706 3.294 8 O -0.567 6.567 9 N -0.678 5.678 10 C 0.211 3.789 11 C -0.199 4.199 12 C -0.050 4.050 13 C -0.217 4.217 14 C 0.138 3.862 15 O -0.226 6.226 16 C -0.413 4.413 17 H 0.102 0.898 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.252 1.252 24 C -0.262 4.262 25 C 0.154 3.846 26 H 0.059 0.941 27 C 0.060 3.940 28 O -0.566 6.566 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.412 0.588 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.120 0.880 40 H 0.273 0.727 41 H 0.127 0.873 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.981 14.571 8.822 28.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.121 0.879 4 C -0.153 4.153 5 C -0.040 4.040 6 N -0.369 5.369 7 C 0.408 3.592 8 O -0.442 6.442 9 N -0.327 5.327 10 C 0.115 3.885 11 C -0.220 4.220 12 C -0.068 4.068 13 C -0.236 4.236 14 C 0.086 3.914 15 O -0.132 6.132 16 C -0.489 4.489 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.175 1.175 24 C -0.285 4.285 25 C 0.050 3.950 26 H 0.078 0.922 27 C -0.019 4.019 28 O -0.371 6.371 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.249 0.751 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.145 0.855 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.983 13.750 8.178 28.003 hybrid contribution 1.161 0.676 0.187 1.356 sum -21.822 14.426 8.365 27.465 Atomic orbital electron populations 1.21766 0.92269 1.02379 1.03286 1.22215 0.97300 0.99483 0.91640 0.87852 1.22941 0.93605 1.00815 0.97934 1.22730 0.99972 1.01542 0.79745 1.47660 1.30975 1.46463 1.11764 1.15621 0.79832 0.79246 0.84476 1.91000 1.71687 1.66457 1.15045 1.42546 1.31238 1.41809 1.17138 1.17188 0.89008 0.88761 0.93510 1.20809 1.00142 0.99283 1.01787 1.20887 0.91970 0.96431 0.97522 1.20446 0.95193 1.04450 1.03559 1.19555 0.84391 0.93474 0.93952 1.83989 1.17004 1.61928 1.50297 1.21796 0.91556 1.28639 1.06885 0.88108 1.26610 0.95360 0.98464 1.01618 1.70195 1.06000 1.40728 1.38959 0.84582 0.77571 0.78020 0.75992 1.18616 1.19785 1.17549 1.20759 0.92823 1.06041 1.08830 1.21762 0.86161 0.92444 0.94664 0.92237 1.22724 0.98814 0.93536 0.86815 1.86979 1.88592 1.36865 1.24695 0.92914 0.89965 0.91991 0.86714 0.90251 0.90268 0.90313 0.75083 0.85796 0.82974 0.86165 0.91838 0.85550 0.90737 0.94024 0.77671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.13 71.98 0.66 -0.39 16 2 C -0.09 -0.87 3.06 -9.60 -0.03 -0.90 16 3 H 0.10 0.75 7.85 -2.39 -0.02 0.73 16 4 C -0.12 -1.00 6.57 32.16 0.21 -0.79 16 5 C 0.08 1.20 6.55 87.02 0.57 1.77 16 6 N -0.63 -14.92 3.07 -804.93 -2.47 -17.39 16 7 C 0.71 23.56 7.97 179.05 1.43 24.98 16 8 O -0.57 -23.25 11.36 19.02 0.22 -23.03 16 9 N -0.68 -22.38 5.29 -317.23 -1.68 -24.05 16 10 C 0.21 8.57 6.27 38.13 0.24 8.81 16 11 C -0.20 -8.03 8.65 22.42 0.19 -7.83 16 12 C -0.05 -1.93 10.03 22.23 0.22 -1.71 16 13 C -0.22 -9.86 9.99 22.41 0.22 -9.63 16 14 C 0.14 7.13 6.64 22.56 0.15 7.28 16 15 O -0.23 -13.79 9.76 -22.85 -0.22 -14.02 16 16 C -0.41 -24.09 9.44 67.92 0.64 -23.45 16 17 H 0.10 5.36 5.30 -2.91 -0.02 5.35 16 18 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 19 N -0.92 -56.81 13.67 21.62 0.30 -56.52 16 20 Si 1.02 42.50 29.55 68.60 2.03 44.53 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 24 C -0.26 -12.08 9.04 22.51 0.20 -11.88 16 25 C 0.15 3.00 2.88 45.34 0.13 3.13 16 26 H 0.06 1.42 7.82 -2.39 -0.02 1.40 16 27 C 0.06 1.19 6.47 71.98 0.47 1.66 16 28 O -0.57 -16.03 10.38 -125.99 -1.31 -17.34 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.74 8.05 -2.39 -0.02 0.72 16 34 H 0.08 1.09 7.38 -2.38 -0.02 1.08 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.41 10.97 7.36 -92.71 -0.68 10.28 16 37 H 0.12 4.97 6.45 -2.91 -0.02 4.96 16 38 H 0.15 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.12 5.28 8.06 -2.91 -0.02 5.25 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.13 5.72 5.71 -2.91 -0.02 5.71 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.38 7.79 9.12 -74.06 -0.68 7.12 16 Total: -1.00 -82.42 359.03 2.32 -80.10 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.32 Total: 37.51 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 5.77 Total: -9.79 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -3.85 Total: -97.96 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -1.31 Total: -54.39 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -82.42 2.32 -80.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277074485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.831 kcal (2) G-P(sol) polarization free energy of solvation -82.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds