Wall clock time and date at job start Tue Mar 31 2020 12:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47180 * 2 1 4 4 O 1.42898 * 109.47008 * 119.99766 * 2 1 3 5 5 C 1.35959 * 117.00007 * 158.02460 * 4 2 1 6 6 C 1.38748 * 119.98179 * 186.55958 * 5 4 2 7 7 C 1.38055 * 120.02283 * 179.76810 * 6 5 4 8 8 C 1.38921 * 119.97498 * 0.52843 * 7 6 5 9 9 N 1.39867 * 120.01870 * 179.70203 * 8 7 6 10 10 C 1.34774 * 120.00315 * 36.33505 * 9 8 7 11 11 O 1.21388 * 119.99887 * 354.91144 * 10 9 8 12 12 C 1.49338 * 120.00515 * 174.91438 * 10 9 8 13 13 O 1.21359 * 119.99524 * 354.75004 * 12 10 9 14 14 N 1.34770 * 120.00091 * 174.75349 * 12 10 9 15 15 C 1.46499 * 119.99984 * 0.55174 * 14 12 10 16 16 C 1.46497 * 120.00168 * 180.55797 * 14 12 10 17 17 C 1.50701 * 109.47424 * 89.99372 * 16 14 12 18 18 H 1.07998 * 119.99878 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00097 * 179.97438 * 17 16 14 20 20 N 1.31520 * 120.00074 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47421 * 90.00546 * 21 19 17 23 23 H 1.48506 * 109.47104 * 210.00193 * 21 19 17 24 24 H 1.48495 * 109.47291 * 330.00049 * 21 19 17 25 25 C 1.38915 * 119.96303 * 359.72547 * 8 7 6 26 26 C 1.38060 * 119.97627 * 359.97438 * 25 8 7 27 27 H 1.09001 * 109.47332 * 60.00328 * 1 2 3 28 28 H 1.09000 * 109.47643 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47668 * 300.00070 * 1 2 3 30 30 H 1.08998 * 109.47171 * 239.99792 * 2 1 3 31 31 H 1.09001 * 109.46720 * 300.00047 * 3 2 1 32 32 H 1.09000 * 109.46502 * 59.99779 * 3 2 1 33 33 H 1.08997 * 109.46711 * 179.97438 * 3 2 1 34 34 H 1.08000 * 119.98678 * 359.97438 * 6 5 4 35 35 H 1.08002 * 120.01540 * 180.23521 * 7 6 5 36 36 H 0.97005 * 120.00078 * 216.33559 * 9 8 7 37 37 H 1.09002 * 109.47024 * 83.56006 * 15 14 12 38 38 H 1.09001 * 109.47363 * 203.55108 * 15 14 12 39 39 H 1.08997 * 109.47593 * 323.55448 * 15 14 12 40 40 H 1.09003 * 109.47515 * 209.99955 * 16 14 12 41 41 H 1.09004 * 109.46782 * 329.99885 * 16 14 12 42 42 H 0.97004 * 120.00022 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.01285 * 179.97438 * 25 8 7 44 44 H 1.08001 * 119.98986 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.2711 -1.1699 1.1199 6 6 3.7484 -1.9514 2.1622 7 6 5.0310 -2.4598 2.1132 8 6 5.8476 -2.1796 1.0249 9 7 7.1493 -2.6890 0.9772 10 6 7.4104 -3.9177 1.4655 11 8 6.5374 -4.5449 2.0294 12 6 8.7738 -4.5078 1.3129 13 8 9.6191 -3.9233 0.6674 14 7 9.0654 -5.6892 1.8921 15 6 8.0414 -6.4006 2.6612 16 6 10.4065 -6.2622 1.7526 17 6 11.2791 -5.7793 2.8825 18 1 10.8750 -5.1127 3.6299 19 6 12.5930 -6.1894 2.9625 20 7 13.0850 -7.0016 2.0526 21 14 13.6743 -5.5915 4.3635 22 1 13.5703 -6.5342 5.5061 23 1 15.0852 -5.5230 3.9052 24 1 13.2273 -4.2421 4.7927 25 6 5.3707 -1.3927 -0.0159 26 6 4.0857 -0.8903 0.0320 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 3.1152 -2.1648 3.0107 35 1 5.4011 -3.0713 2.9229 36 1 7.8642 -2.1579 0.5927 37 1 7.4154 -6.9808 1.9832 38 1 8.5222 -7.0702 3.3742 39 1 7.4246 -5.6802 3.1984 40 1 10.3419 -7.3499 1.7826 41 1 10.8379 -5.9499 0.8015 42 1 14.0095 -7.2899 2.1087 43 1 6.0050 -1.1740 -0.8622 44 1 3.7148 -0.2782 -0.7768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283182123.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:33 Heat of formation + Delta-G solvation = -67.321587 kcal Electronic energy + Delta-G solvation = -26183.832341 eV Core-core repulsion = 22295.422853 eV Total energy + Delta-G solvation = -3888.409487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94943 -40.16424 -38.51923 -37.36798 -35.46922 -34.31198 -33.25620 -32.58856 -31.13564 -29.07655 -28.03709 -27.64048 -26.17634 -24.60933 -23.71775 -22.71023 -21.90857 -20.85920 -19.50784 -18.53267 -17.65568 -17.13940 -16.65812 -16.05669 -15.83703 -15.77049 -15.41843 -15.05753 -14.84165 -14.40492 -14.29324 -13.84168 -13.77096 -13.32732 -13.19151 -13.08864 -12.93029 -12.66327 -12.61464 -12.41136 -12.19737 -12.09811 -11.95326 -11.51013 -11.31685 -11.26851 -11.00983 -10.90681 -10.74164 -10.53724 -10.23070 -9.94963 -9.69456 -9.17815 -8.80194 -8.50063 -7.90869 -7.76931 -6.11337 -4.16902 1.10474 1.18995 1.93040 2.70872 2.95755 3.27654 3.34016 3.38451 3.55344 3.77493 4.03133 4.35636 4.39803 4.46934 4.62183 4.66932 4.73230 4.78244 5.04347 5.10581 5.19182 5.23420 5.28437 5.29956 5.36056 5.46084 5.66698 5.72718 5.81824 5.84320 5.94539 6.11534 6.13820 6.19747 6.28056 6.50184 6.72221 6.81765 7.19637 7.25311 7.26968 7.36046 7.81617 7.92053 8.11452 8.19042 8.61268 8.87941 9.48156 10.96829 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033204 B = 0.002220 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.068642 B =12607.687438 C =12730.902494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 C -0.184 4.184 4 O -0.312 6.312 5 C 0.115 3.885 6 C -0.134 4.134 7 C -0.078 4.078 8 C 0.111 3.889 9 N -0.650 5.650 10 C 0.509 3.491 11 O -0.505 6.505 12 C 0.495 3.505 13 O -0.525 6.525 14 N -0.561 5.561 15 C 0.074 3.926 16 C 0.241 3.759 17 C -0.530 4.530 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.102 4.102 26 C -0.193 4.193 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.422 0.578 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.048 0.952 42 H 0.265 0.735 43 H 0.130 0.870 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.124 13.554 -4.441 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 C -0.241 4.241 4 O -0.226 6.226 5 C 0.069 3.931 6 C -0.153 4.153 7 C -0.098 4.098 8 C 0.017 3.983 9 N -0.297 5.297 10 C 0.292 3.708 11 O -0.379 6.379 12 C 0.275 3.725 13 O -0.403 6.403 14 N -0.292 5.292 15 C -0.069 4.069 16 C 0.123 3.877 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.122 4.122 26 C -0.212 4.212 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.164 0.836 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.197 13.214 -4.280 27.038 hybrid contribution 1.119 0.556 0.316 1.289 sum -22.078 13.770 -3.964 26.320 Atomic orbital electron populations 1.21837 0.92441 1.03232 1.03006 1.22404 0.95424 0.92590 0.87492 1.22446 1.02434 0.96079 1.03146 1.86125 1.27236 1.69968 1.39280 1.18977 0.84234 0.94757 0.95102 1.20341 0.96272 0.99766 0.98938 1.21159 0.92951 0.98500 0.97220 1.17689 0.85790 0.99578 0.95245 1.43211 1.09058 1.16911 1.60546 1.20958 0.90181 0.81173 0.78457 1.90655 1.47667 1.60330 1.39276 1.19518 0.86791 0.83373 0.82825 1.90739 1.48332 1.60195 1.41011 1.48128 1.15024 1.18651 1.47423 1.22129 0.90811 0.97928 0.96036 1.19532 0.75430 0.93888 0.98890 1.21374 0.95858 1.29517 1.10153 0.92239 1.24938 0.97683 0.94939 0.96478 1.69932 1.15422 1.33552 1.34217 0.86442 0.79589 0.79227 0.81859 1.20530 1.21021 1.19837 1.20755 0.95521 0.98939 0.96994 1.21059 0.94808 1.05755 0.99560 0.90561 0.91582 0.91460 0.90979 0.91067 0.91398 0.91547 0.84867 0.83555 0.74032 0.93180 0.91104 0.89519 0.94136 0.93363 0.92564 0.85175 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.56 37.15 0.36 -0.46 16 2 C 0.08 0.55 2.86 -26.73 -0.08 0.47 16 3 C -0.18 -1.11 9.09 37.16 0.34 -0.77 16 4 O -0.31 -3.20 9.81 -19.61 -0.19 -3.39 16 5 C 0.11 1.27 6.57 -39.21 -0.26 1.01 16 6 C -0.13 -1.57 9.98 -39.46 -0.39 -1.97 16 7 C -0.08 -1.03 8.69 -39.40 -0.34 -1.37 16 8 C 0.11 1.45 6.28 -83.69 -0.53 0.92 16 9 N -0.65 -9.31 5.31 -10.27 -0.05 -9.37 16 10 C 0.51 8.79 7.60 -11.64 -0.09 8.71 16 11 O -0.50 -8.82 10.70 5.46 0.06 -8.76 16 12 C 0.49 10.39 7.73 -11.64 -0.09 10.30 16 13 O -0.52 -12.33 16.07 5.49 0.09 -12.24 16 14 N -0.56 -12.28 2.86 -183.51 -0.52 -12.81 16 15 C 0.07 1.33 9.41 59.85 0.56 1.90 16 16 C 0.24 6.24 5.13 -5.19 -0.03 6.21 16 17 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 18 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.10 -1.10 9.96 -39.40 -0.39 -1.49 16 26 C -0.19 -1.92 8.10 -39.46 -0.32 -2.24 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.48 6.58 -51.93 -0.34 0.14 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.44 6.46 -51.93 -0.34 0.10 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.15 2.05 6.30 -52.49 -0.33 1.72 16 36 H 0.42 5.50 8.33 -40.82 -0.34 5.16 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 39 H 0.09 1.50 5.58 -51.93 -0.29 1.21 16 40 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 41 H 0.05 1.38 7.41 -51.93 -0.38 0.99 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.13 1.01 5.24 -52.49 -0.28 0.73 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -32.07 367.80 -7.10 -39.18 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.06 Total: 2.89 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.68 Total: 7.73 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.16 Total: -47.49 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.07 -7.10 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283182123.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.143 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds