Wall clock time and date at job start Tue Mar 31 2020 13:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.34770 * 119.99955 * 84.99585 * 12 2 1 14 14 O 1.21587 * 120.00465 * 0.02562 * 13 12 2 15 15 C 1.47544 * 120.00247 * 180.02562 * 13 12 2 16 16 C 1.39707 * 120.18817 * 0.02562 * 15 13 12 17 17 C 1.37786 * 119.90966 * 179.97438 * 16 15 13 18 18 C 1.38544 * 120.29805 * 0.02897 * 17 16 15 19 19 C 1.38055 * 120.39033 * 359.97438 * 18 17 16 20 20 C 1.38708 * 120.08537 * 359.73836 * 19 18 17 21 21 O 1.35653 * 120.15211 * 180.28334 * 20 19 18 22 22 C 1.42902 * 116.99978 * 0.25319 * 21 20 19 23 23 C 1.50695 * 109.46998 * 180.02562 * 22 21 20 24 24 O 1.21287 * 120.00270 * 0.02562 * 23 22 21 25 25 N 1.34782 * 120.00023 * 180.02562 * 23 22 21 26 26 C 1.46504 * 120.00040 * 179.97438 * 25 23 22 27 27 C 1.46492 * 119.99720 * 359.97438 * 25 23 22 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00110 * 265.00363 * 12 2 1 33 33 H 1.08008 * 120.04659 * 0.02562 * 16 15 13 34 34 H 1.08001 * 119.85352 * 179.97438 * 17 16 15 35 35 H 1.07998 * 119.80520 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.95808 * 180.02562 * 19 18 17 37 37 H 1.08995 * 109.47286 * 300.00179 * 22 21 20 38 38 H 1.08996 * 109.46951 * 60.00377 * 22 21 20 39 39 H 1.09001 * 109.46933 * 90.00022 * 26 25 23 40 40 H 1.08987 * 109.47037 * 209.99718 * 26 25 23 41 41 H 1.09003 * 109.47103 * 330.00362 * 26 25 23 42 42 H 1.08998 * 109.47090 * 90.00102 * 27 25 23 43 43 H 1.08999 * 109.47094 * 210.00007 * 27 25 23 44 44 H 1.08997 * 109.47250 * 330.00214 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1615 -2.4117 15 6 2.6382 -0.7139 -3.5620 16 6 2.9707 -2.0696 -3.5040 17 6 3.4284 -2.7136 -4.6329 18 6 3.5613 -2.0227 -5.8263 19 6 3.2364 -0.6828 -5.8976 20 6 2.7685 -0.0200 -4.7725 21 8 2.4434 1.2951 -4.8424 22 6 2.6021 1.9362 -6.1096 23 6 2.1960 3.3829 -5.9951 24 8 1.8091 3.8219 -4.9327 25 7 2.2626 4.1889 -7.0732 26 6 1.8672 5.5952 -6.9620 27 6 2.7304 3.6588 -8.3563 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7091 1.1614 3.4844 32 1 2.2490 -1.6317 -1.1527 33 1 2.8683 -2.6123 -2.5758 34 1 3.6855 -3.7616 -4.5869 35 1 3.9212 -2.5352 -6.7062 36 1 3.3423 -0.1510 -6.8317 37 1 3.6454 1.8755 -6.4194 38 1 1.9741 1.4396 -6.8492 39 1 2.7342 6.1957 -6.6866 40 1 1.4762 5.9395 -7.9193 41 1 1.0972 5.6968 -6.1972 42 1 1.8814 3.2756 -8.9223 43 1 3.2157 4.4537 -8.9226 44 1 3.4421 2.8527 -8.1785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299570786.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:36 Heat of formation + Delta-G solvation = -66.057490 kcal Electronic energy + Delta-G solvation = -26809.461184 eV Core-core repulsion = 22921.106512 eV Total energy + Delta-G solvation = -3888.354672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.61383 -39.68449 -38.19165 -37.12802 -35.69926 -34.59449 -32.38941 -31.29152 -30.48542 -29.40356 -28.47148 -27.66268 -25.68822 -25.14822 -23.76511 -22.25227 -20.99496 -19.72448 -19.22058 -18.60353 -17.32623 -17.02090 -16.71151 -16.26116 -15.88536 -15.50602 -15.32384 -14.90758 -14.66978 -14.47968 -14.04026 -13.87833 -13.54084 -13.25818 -12.99827 -12.98885 -12.85182 -12.64854 -12.37935 -12.28317 -12.23991 -11.69321 -11.52889 -11.24864 -11.16405 -11.00041 -10.87222 -10.59990 -10.22496 -10.12677 -9.87010 -9.00763 -8.97667 -8.92886 -8.82581 -8.44005 -8.21356 -7.69834 -6.02125 -4.11327 1.02771 1.39244 2.35677 2.44916 3.31705 3.36479 3.37657 3.38016 3.39302 4.16046 4.21209 4.29770 4.45256 4.55438 4.69669 4.74918 4.79243 4.83800 4.92703 5.03228 5.10165 5.20241 5.26741 5.29548 5.32456 5.47560 5.59873 5.61314 5.87269 6.11793 6.20742 6.24756 6.43042 6.67408 6.96419 6.98291 7.12277 7.29104 7.37769 7.62611 7.70515 7.82484 8.01555 8.05569 8.27167 8.81654 8.91358 9.32285 9.56501 11.03875 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.003284 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.010832 B = 8523.031919 C =10239.034246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.536 3.464 14 O -0.519 6.519 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.167 4.167 18 C -0.064 4.064 19 C -0.226 4.226 20 C 0.176 3.824 21 O -0.250 6.250 22 C 0.038 3.962 23 C 0.509 3.491 24 O -0.488 6.488 25 N -0.627 5.627 26 C 0.088 3.912 27 C 0.076 3.924 28 H 0.089 0.911 29 H 0.015 0.985 30 H 0.025 0.975 31 H 0.264 0.736 32 H 0.384 0.616 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -1.432 -25.688 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.358 5.358 13 C 0.321 3.679 14 O -0.396 6.396 15 C -0.155 4.155 16 C -0.068 4.068 17 C -0.185 4.185 18 C -0.083 4.083 19 C -0.244 4.244 20 C 0.128 3.872 21 O -0.159 6.159 22 C -0.041 4.041 23 C 0.295 3.705 24 O -0.359 6.359 25 N -0.365 5.365 26 C -0.055 4.055 27 C -0.068 4.068 28 H 0.108 0.892 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.928 -0.031 -24.766 25.252 hybrid contribution 0.577 -1.063 0.402 1.274 sum 5.505 -1.094 -24.364 25.003 Atomic orbital electron populations 1.22071 0.98539 0.98969 1.00930 1.18712 0.90966 0.94040 0.79788 0.93285 1.21191 1.32389 1.13165 0.90397 0.92191 1.24891 0.94888 0.94970 0.98988 1.69904 1.35867 1.22399 1.23868 0.86519 0.79145 0.79544 0.81918 1.20214 1.21175 1.20203 1.46432 1.65656 1.13295 1.10383 1.18000 0.79710 0.87101 0.83080 1.90869 1.49508 1.14776 1.84472 1.19849 1.07940 0.94225 0.93464 1.21303 0.94177 0.92293 0.99012 1.20976 1.04194 1.00465 0.92865 1.21001 0.96196 0.93269 0.97820 1.21145 1.08946 0.96651 0.97691 1.19075 0.92092 0.82961 0.93103 1.86529 1.80220 1.19589 1.29611 1.22517 1.02286 0.92039 0.87293 1.20097 0.79134 0.87274 0.84038 1.90879 1.42914 1.75351 1.26768 1.47636 1.67695 1.11106 1.10073 1.21643 1.01065 0.79996 1.02755 1.21852 0.99690 1.00227 0.85000 0.89216 0.96558 0.95589 0.92577 0.78252 0.84605 0.85458 0.85650 0.85345 0.89243 0.89230 0.92588 0.91140 0.90201 0.92261 0.90609 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.26 37.16 0.34 -3.58 16 2 C 0.27 7.29 2.56 -69.08 -0.18 7.11 16 3 H 0.05 1.55 7.58 -51.93 -0.39 1.16 16 4 C -0.53 -14.79 8.73 -34.44 -0.30 -15.09 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.88 -25.99 11.32 55.43 0.63 -25.36 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 N -0.71 -16.22 5.02 -55.97 -0.28 -16.50 16 13 C 0.54 12.38 7.73 -12.47 -0.10 12.28 16 14 O -0.52 -14.37 14.82 -16.59 -0.25 -14.61 16 15 C -0.15 -2.71 5.89 -104.84 -0.62 -3.32 16 16 C -0.05 -0.68 9.53 -39.20 -0.37 -1.06 16 17 C -0.17 -1.82 10.02 -39.63 -0.40 -2.22 16 18 C -0.06 -0.64 10.03 -39.54 -0.40 -1.04 16 19 C -0.23 -2.57 9.03 -39.47 -0.36 -2.92 16 20 C 0.18 2.85 6.70 -38.70 -0.26 2.59 16 21 O -0.25 -4.55 7.74 -48.92 -0.38 -4.93 16 22 C 0.04 0.46 3.77 36.00 0.14 0.59 16 23 C 0.51 7.33 7.75 -10.99 -0.09 7.25 16 24 O -0.49 -10.06 16.08 -14.36 -0.23 -10.29 16 25 N -0.63 -6.14 3.27 -189.52 -0.62 -6.76 16 26 C 0.09 0.76 10.44 59.85 0.62 1.38 16 27 C 0.08 0.37 10.24 59.84 0.61 0.98 16 28 H 0.09 2.57 6.07 -51.93 -0.32 2.26 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.38 7.50 6.57 -40.82 -0.27 7.23 16 33 H 0.14 1.70 6.41 -52.48 -0.34 1.36 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.01 6.30 -52.48 -0.33 0.68 16 37 H 0.09 0.78 6.91 -51.93 -0.36 0.43 16 38 H 0.09 0.79 7.64 -51.93 -0.40 0.39 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.39 8.07 -51.94 -0.42 -0.03 16 41 H 0.08 0.87 7.42 -51.93 -0.39 0.49 16 42 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 44 H 0.07 0.26 6.44 -51.93 -0.33 -0.08 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -39.28 368.30 -8.07 -47.36 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.03 Total: 4.56 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -1.44 Total: 4.70 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.27 Total: -48.63 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.86 Total: -29.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.28 -8.07 -47.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299570786.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.702 kcal (2) G-P(sol) polarization free energy of solvation -39.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds