Wall clock time and date at job start Tue Mar 31 2020 13:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.34770 * 119.99955 * 84.99585 * 12 2 1 14 14 O 1.21587 * 120.00465 * 0.02562 * 13 12 2 15 15 C 1.47544 * 120.00247 * 180.02562 * 13 12 2 16 16 C 1.39707 * 120.18817 * 0.02562 * 15 13 12 17 17 C 1.37786 * 119.90966 * 179.97438 * 16 15 13 18 18 C 1.38544 * 120.29805 * 0.02897 * 17 16 15 19 19 C 1.38055 * 120.39033 * 359.97438 * 18 17 16 20 20 C 1.38708 * 120.08537 * 359.73836 * 19 18 17 21 21 O 1.35653 * 120.15211 * 180.28334 * 20 19 18 22 22 C 1.42902 * 116.99978 * 0.25319 * 21 20 19 23 23 C 1.50695 * 109.46998 * 180.02562 * 22 21 20 24 24 O 1.21287 * 120.00270 * 0.02562 * 23 22 21 25 25 N 1.34782 * 120.00023 * 180.02562 * 23 22 21 26 26 C 1.46504 * 120.00040 * 179.97438 * 25 23 22 27 27 C 1.46492 * 119.99720 * 359.97438 * 25 23 22 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00110 * 265.00363 * 12 2 1 33 33 H 1.08008 * 120.04659 * 0.02562 * 16 15 13 34 34 H 1.08001 * 119.85352 * 179.97438 * 17 16 15 35 35 H 1.07998 * 119.80520 * 179.97438 * 18 17 16 36 36 H 1.08007 * 119.95808 * 180.02562 * 19 18 17 37 37 H 1.08995 * 109.47286 * 300.00179 * 22 21 20 38 38 H 1.08996 * 109.46951 * 60.00377 * 22 21 20 39 39 H 1.09001 * 109.46933 * 90.00022 * 26 25 23 40 40 H 1.08987 * 109.47037 * 209.99718 * 26 25 23 41 41 H 1.09003 * 109.47103 * 330.00362 * 26 25 23 42 42 H 1.08998 * 109.47090 * 90.00102 * 27 25 23 43 43 H 1.08999 * 109.47094 * 210.00007 * 27 25 23 44 44 H 1.08997 * 109.47250 * 330.00214 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1615 -2.4117 15 6 2.6382 -0.7139 -3.5620 16 6 2.9707 -2.0696 -3.5040 17 6 3.4284 -2.7136 -4.6329 18 6 3.5613 -2.0227 -5.8263 19 6 3.2364 -0.6828 -5.8976 20 6 2.7685 -0.0200 -4.7725 21 8 2.4434 1.2951 -4.8424 22 6 2.6021 1.9362 -6.1096 23 6 2.1960 3.3829 -5.9951 24 8 1.8091 3.8219 -4.9327 25 7 2.2626 4.1889 -7.0732 26 6 1.8672 5.5952 -6.9620 27 6 2.7304 3.6588 -8.3563 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7091 1.1614 3.4844 32 1 2.2490 -1.6317 -1.1527 33 1 2.8683 -2.6123 -2.5758 34 1 3.6855 -3.7616 -4.5869 35 1 3.9212 -2.5352 -6.7062 36 1 3.3423 -0.1510 -6.8317 37 1 3.6454 1.8755 -6.4194 38 1 1.9741 1.4396 -6.8492 39 1 2.7342 6.1957 -6.6866 40 1 1.4762 5.9395 -7.9193 41 1 1.0972 5.6968 -6.1972 42 1 1.8814 3.2756 -8.9223 43 1 3.2157 4.4537 -8.9226 44 1 3.4421 2.8527 -8.1785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299570786.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:35 Heat of formation + Delta-G solvation = -94.902982 kcal Electronic energy + Delta-G solvation = -26810.712018 eV Core-core repulsion = 22921.106512 eV Total energy + Delta-G solvation = -3889.605506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71915 -40.85084 -39.77254 -38.20067 -36.67678 -36.64925 -34.37681 -32.58855 -31.46723 -30.60860 -30.05289 -28.33205 -27.37540 -26.46485 -25.09655 -23.37681 -22.60769 -21.26088 -20.45653 -19.87274 -18.77730 -17.98131 -17.67982 -17.64082 -17.33669 -17.04312 -16.37617 -16.26394 -15.97248 -15.69602 -15.55696 -15.30649 -14.62313 -14.57218 -14.33325 -14.24685 -13.74933 -13.67464 -13.52161 -13.46376 -13.31307 -12.98694 -12.92355 -12.86270 -12.75257 -12.65185 -12.29898 -12.17834 -12.14044 -12.08229 -11.14634 -10.99011 -10.68570 -10.55713 -10.05397 -9.78518 -9.71558 -9.20326 -8.18056 -6.37349 -0.04426 0.44316 1.41779 1.42918 1.47169 1.50789 1.54921 2.08478 2.34788 2.51137 2.64182 2.94414 3.11696 3.36792 3.78005 3.89425 3.89958 4.01390 4.14035 4.28349 4.30821 4.36668 4.46071 4.48839 4.56109 4.69881 4.75963 4.86910 4.87865 4.90778 4.92020 5.06105 5.20538 5.37015 5.41374 5.42288 5.50995 5.59730 5.65753 5.81246 5.90752 6.07023 6.15007 6.43290 6.70353 6.99785 7.05087 7.30790 7.60751 8.88879 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.003284 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.010832 B = 8523.031919 C =10239.034246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H -0.011 1.011 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.980 3.020 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.704 5.704 13 C 0.529 3.471 14 O -0.582 6.582 15 C -0.198 4.198 16 C -0.053 4.053 17 C -0.159 4.159 18 C -0.042 4.042 19 C -0.214 4.214 20 C 0.155 3.845 21 O -0.305 6.305 22 C 0.035 3.965 23 C 0.495 3.505 24 O -0.575 6.575 25 N -0.617 5.617 26 C 0.082 3.918 27 C 0.064 3.936 28 H 0.068 0.932 29 H 0.002 0.998 30 H 0.044 0.956 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 -5.117 -29.416 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.170 3.830 3 H 0.007 0.993 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.190 4.190 7 N -0.559 5.559 8 Si 0.804 3.196 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.354 5.354 13 C 0.318 3.682 14 O -0.463 6.463 15 C -0.202 4.202 16 C -0.072 4.072 17 C -0.177 4.177 18 C -0.059 4.059 19 C -0.233 4.233 20 C 0.107 3.893 21 O -0.217 6.217 22 C -0.043 4.043 23 C 0.283 3.717 24 O -0.454 6.454 25 N -0.352 5.352 26 C -0.060 4.060 27 C -0.077 4.077 28 H 0.087 0.913 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.158 0.842 34 H 0.183 0.817 35 H 0.194 0.806 36 H 0.189 0.811 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.211 -3.768 -28.598 29.733 hybrid contribution -0.077 0.120 1.324 1.332 sum 7.134 -3.648 -27.274 28.427 Atomic orbital electron populations 1.21885 0.98489 0.99439 0.99177 1.18300 0.91017 0.91632 0.82076 0.99337 1.21512 1.32829 1.13689 0.90614 0.90541 1.25933 0.94786 0.95591 1.02641 1.70082 1.37030 1.24059 1.24745 0.85284 0.78626 0.78743 0.76979 1.19452 1.21096 1.18356 1.46156 1.65817 1.13975 1.09496 1.18937 0.78235 0.86621 0.84410 1.90829 1.52227 1.17647 1.85613 1.19581 1.12538 0.96123 0.91970 1.21438 0.94292 0.90570 1.00851 1.21437 1.02231 1.02097 0.91896 1.21656 0.92889 0.92458 0.98943 1.21596 1.06952 0.97421 0.97303 1.19427 0.93113 0.82656 0.94094 1.86465 1.80987 1.21101 1.33106 1.22871 1.05198 0.90149 0.86072 1.20821 0.78179 0.88813 0.83867 1.90842 1.47282 1.77013 1.30215 1.47826 1.65702 1.10947 1.10727 1.21770 1.00466 0.79963 1.03846 1.22275 1.01087 1.01740 0.82576 0.91335 0.97844 0.93724 0.92497 0.76186 0.84171 0.81736 0.80558 0.81146 0.85409 0.85407 0.92207 0.87114 0.93630 0.90324 0.88254 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.51 9.26 71.98 0.67 -6.84 16 2 C 0.27 16.01 2.56 44.25 0.11 16.13 16 3 H -0.01 -0.79 7.58 -2.39 -0.02 -0.81 16 4 C -0.55 -31.38 8.73 25.60 0.22 -31.15 16 5 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -56.69 11.32 21.45 0.24 -56.44 16 8 Si 0.98 44.11 29.54 68.60 2.03 46.13 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 N -0.70 -34.34 5.02 -449.27 -2.25 -36.59 16 13 C 0.53 26.44 7.73 86.70 0.67 27.11 16 14 O -0.58 -35.72 14.82 16.93 0.25 -35.47 16 15 C -0.20 -7.32 5.89 -20.01 -0.12 -7.43 16 16 C -0.05 -1.39 9.53 22.52 0.21 -1.18 16 17 C -0.16 -2.71 10.02 22.24 0.22 -2.49 16 18 C -0.04 -0.57 10.03 22.30 0.22 -0.35 16 19 C -0.21 -3.93 9.03 22.34 0.20 -3.73 16 20 C 0.15 4.96 6.70 22.84 0.15 5.12 16 21 O -0.30 -11.64 7.74 -60.75 -0.47 -12.11 16 22 C 0.03 0.80 3.77 71.23 0.27 1.07 16 23 C 0.50 14.94 7.75 87.65 0.68 15.62 16 24 O -0.58 -26.43 16.08 15.99 0.26 -26.18 16 25 N -0.62 -11.63 3.27 -871.91 -2.85 -14.48 16 26 C 0.08 1.44 10.44 127.77 1.33 2.77 16 27 C 0.06 0.38 10.24 127.77 1.31 1.69 16 28 H 0.07 4.20 6.07 -2.39 -0.01 4.18 16 29 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 30 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.40 16.25 6.57 -92.71 -0.61 15.64 16 33 H 0.14 3.36 6.41 -2.91 -0.02 3.35 16 34 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.17 1.57 6.30 -2.91 -0.02 1.56 16 37 H 0.13 1.84 6.91 -2.39 -0.02 1.82 16 38 H 0.13 1.85 7.64 -2.39 -0.02 1.83 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 1.02 8.07 -2.39 -0.02 1.00 16 41 H 0.04 1.13 7.42 -2.39 -0.02 1.11 16 42 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.10 0.19 8.07 -2.39 -0.02 0.17 16 44 H 0.09 0.22 6.44 -2.39 -0.02 0.21 16 Total: -1.00 -100.59 368.30 4.23 -96.37 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.42 Total: 21.40 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 6.61 Total: 17.37 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -4.87 Total: -107.52 kcal Atomic # 8 Polarization: -73.79 SS G_CDS: 0.04 Total: -73.75 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -100.59 4.23 -96.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299570786.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.464 kcal (2) G-P(sol) polarization free energy of solvation -100.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds