Wall clock time and date at job start Tue Mar 31 2020 13:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47062 * 2 1 4 4 C 1.50698 * 109.47178 * 239.99409 * 2 1 3 5 5 H 1.07994 * 120.00327 * 239.99994 * 4 2 1 6 6 C 1.37884 * 119.99943 * 60.00457 * 4 2 1 7 7 N 1.31518 * 119.99734 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99915 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47119 * 269.99600 * 8 6 4 10 10 H 1.48500 * 109.47337 * 30.00175 * 8 6 4 11 11 H 1.48505 * 109.46917 * 149.99654 * 8 6 4 12 12 N 1.46504 * 109.47021 * 119.99360 * 2 1 3 13 13 C 1.34774 * 120.00220 * 275.00243 * 12 2 1 14 14 O 1.21280 * 119.99804 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00054 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.58587 * 1.67054 * 15 13 12 17 17 C 1.53191 * 109.58560 * 241.38851 * 15 13 12 18 18 C 1.53041 * 109.31159 * 185.57455 * 17 15 13 19 19 C 1.53043 * 109.53741 * 61.36804 * 18 17 15 20 20 C 1.53192 * 109.30971 * 298.63114 * 19 18 17 21 21 N 1.46922 * 109.59032 * 122.09832 * 15 13 12 22 22 C 1.34781 * 120.62940 * 353.39386 * 21 15 13 23 23 O 1.21701 * 119.99732 * 6.58388 * 22 21 15 24 24 C 1.46658 * 120.00087 * 186.58201 * 22 21 15 25 25 C 1.36546 * 125.98452 * 187.19802 * 24 22 21 26 26 C 1.40367 * 106.70338 * 179.97438 * 25 24 22 27 27 C 1.35130 * 107.11636 * 359.97438 * 26 25 24 28 28 O 1.33933 * 108.76628 * 359.75685 * 27 26 25 29 29 H 1.09002 * 109.47395 * 300.00485 * 1 2 3 30 30 H 1.09004 * 109.47019 * 60.00354 * 1 2 3 31 31 H 1.09004 * 109.47501 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99900 * 180.02562 * 7 6 4 33 33 H 0.97004 * 119.99183 * 95.00215 * 12 2 1 34 34 H 1.09002 * 109.50033 * 305.52918 * 17 15 13 35 35 H 1.09006 * 109.49618 * 65.62689 * 17 15 13 36 36 H 1.08997 * 109.45652 * 181.38641 * 18 17 15 37 37 H 1.08998 * 109.46168 * 301.34400 * 18 17 15 38 38 H 1.08999 * 109.49714 * 58.58477 * 19 18 17 39 39 H 1.08997 * 109.49817 * 178.64875 * 19 18 17 40 40 H 1.08999 * 109.58808 * 174.41912 * 20 19 18 41 41 H 1.08999 * 109.58643 * 294.70883 * 20 19 18 42 42 H 1.07992 * 126.64926 * 359.95907 * 25 24 22 43 43 H 1.07999 * 126.43847 * 180.02562 * 26 25 24 44 44 H 1.08000 * 125.61454 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1198 -4.0078 9 1 3.6305 -0.5443 -4.4118 10 1 2.4879 -2.5656 -3.7120 11 1 1.3444 -0.9493 -5.1122 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8589 1.1588 2.4114 15 6 2.6498 -0.7282 3.5876 16 1 2.8844 -1.7639 3.3415 17 6 1.5743 -0.6905 4.6778 18 6 2.1401 -1.2889 5.9678 19 6 3.3342 -0.4551 6.4381 20 6 4.4296 -0.4902 5.3677 21 7 3.8547 -0.0529 4.0883 22 6 4.4219 0.9487 3.3872 23 8 3.8719 1.3824 2.3920 24 6 5.7020 1.5161 3.8237 25 6 6.3150 2.6149 3.2934 26 6 7.5077 2.7970 4.0107 27 6 7.5693 1.8142 4.9361 28 8 6.4767 1.0478 4.8240 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7082 1.1607 -3.4844 33 1 2.2489 -1.6317 1.1527 34 1 1.2738 0.3418 4.8569 35 1 0.7096 -1.2711 4.3562 36 1 1.3691 -1.2858 6.7382 37 1 2.4632 -2.3132 5.7818 38 1 3.0171 0.5750 6.6006 39 1 3.7217 -0.8677 7.3696 40 1 5.2402 0.1806 5.6523 41 1 4.8129 -1.5059 5.2703 42 1 5.9527 3.2253 2.4796 43 1 8.2383 3.5766 3.8532 44 1 8.3660 1.6729 5.6514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299669100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:52 Heat of formation + Delta-G solvation = -29.333582 kcal Electronic energy + Delta-G solvation = -28226.208006 eV Core-core repulsion = 24339.445802 eV Total energy + Delta-G solvation = -3886.762204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.79053 -40.44699 -37.77807 -37.26535 -34.53067 -33.42967 -32.72858 -32.23879 -31.45358 -29.75218 -28.67676 -25.85341 -25.12201 -23.86869 -23.11643 -21.90551 -21.06846 -20.75728 -19.63307 -19.19451 -17.83981 -17.02267 -16.42982 -16.31326 -15.98771 -15.48000 -15.00542 -14.87214 -14.46837 -14.23464 -13.93440 -13.86755 -13.55237 -13.23459 -13.07680 -12.96701 -12.71883 -12.57413 -12.35075 -12.17779 -11.56827 -11.47594 -11.15360 -10.98811 -10.92639 -10.90390 -10.67909 -10.59915 -10.22507 -10.11718 -10.08818 -9.37961 -8.90302 -8.82871 -8.63832 -8.50070 -8.39715 -7.58215 -5.99977 -4.07852 1.10155 2.32176 2.49864 2.96558 3.31675 3.32547 3.37624 3.39664 3.89662 4.09390 4.43213 4.57054 4.66580 4.76408 4.83944 4.87018 4.93727 5.06740 5.17377 5.32015 5.36230 5.39279 5.61263 5.62427 5.67530 5.73783 5.77094 5.77575 5.89592 5.98738 6.03356 6.28146 6.28937 6.54990 6.78220 6.97105 7.09940 7.30964 7.40505 7.67910 7.73907 7.85078 8.09154 8.29143 8.31744 8.87340 8.95575 9.41869 9.60671 11.06190 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.004185 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.711579 B = 6689.558251 C = 8069.875162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.270 3.730 3 H 0.051 0.949 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.709 5.709 13 C 0.513 3.487 14 O -0.520 6.520 15 C 0.128 3.872 16 H 0.084 0.916 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.135 4.135 20 C 0.099 3.901 21 N -0.599 5.599 22 C 0.580 3.420 23 O -0.450 6.450 24 C -0.064 4.064 25 C -0.125 4.125 26 C -0.220 4.220 27 C -0.028 4.028 28 O -0.162 6.162 29 H 0.013 0.987 30 H 0.088 0.912 31 H 0.024 0.976 32 H 0.262 0.738 33 H 0.383 0.617 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 -3.604 20.414 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.168 3.832 3 H 0.069 0.931 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.358 5.358 13 C 0.296 3.704 14 O -0.396 6.396 15 C 0.022 3.978 16 H 0.102 0.898 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.173 4.173 20 C -0.023 4.023 21 N -0.335 5.335 22 C 0.366 3.634 23 O -0.321 6.321 24 C -0.116 4.116 25 C -0.145 4.145 26 C -0.239 4.239 27 C -0.097 4.097 28 O -0.059 6.059 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.214 0.786 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.178 0.822 43 H 0.172 0.828 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 9.764 -2.615 19.865 22.288 hybrid contribution 0.728 -0.790 -0.851 1.371 sum 10.492 -3.405 19.013 21.982 Atomic orbital electron populations 1.22073 0.98821 0.98796 1.00718 1.18653 0.90550 0.94214 0.79784 0.93146 1.21232 1.31970 1.12950 0.90485 0.92346 1.24876 0.94951 0.95005 0.98923 1.69915 1.36119 1.22581 1.23604 0.86485 0.78584 0.79806 0.82403 1.20655 1.19936 1.21143 1.46384 1.66080 1.13041 1.10302 1.19622 0.79397 0.87321 0.84030 1.90658 1.49733 1.14948 1.84212 1.21328 0.85548 0.96297 0.94653 0.89763 1.21817 0.97084 1.03244 0.93882 1.21523 0.97657 0.99186 0.97132 1.21934 0.96092 1.01362 0.97936 1.22128 0.96449 1.01273 0.82415 1.47669 1.27490 1.35918 1.22438 1.16956 0.82092 0.79876 0.84483 1.91290 1.58235 1.58103 1.24483 1.22369 0.95503 0.99758 0.93962 1.22022 0.94593 0.96758 1.01140 1.21838 1.00056 1.02544 0.99453 1.24432 0.90557 0.92679 1.01997 1.84199 1.28109 1.48886 1.44661 0.96810 0.89321 0.95701 0.92754 0.78587 0.90256 0.90238 0.91304 0.91597 0.91334 0.90655 0.87699 0.91268 0.82192 0.82844 0.77735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.26 37.15 0.34 -3.47 16 2 C 0.27 7.36 2.56 -69.08 -0.18 7.19 16 3 H 0.05 1.63 7.58 -51.93 -0.39 1.23 16 4 C -0.53 -14.82 8.73 -34.44 -0.30 -15.12 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -26.10 11.32 55.43 0.63 -25.48 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.71 -16.05 5.07 -54.94 -0.28 -16.33 16 13 C 0.51 11.10 4.77 -10.99 -0.05 11.05 16 14 O -0.52 -13.51 13.56 -20.03 -0.27 -13.78 16 15 C 0.13 2.02 3.31 -68.75 -0.23 1.79 16 16 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 17 C -0.12 -1.59 5.33 -26.61 -0.14 -1.73 16 18 C -0.12 -1.10 5.88 -26.69 -0.16 -1.25 16 19 C -0.14 -1.23 6.08 -26.61 -0.16 -1.39 16 20 C 0.10 1.06 6.13 -3.71 -0.02 1.04 16 21 N -0.60 -9.12 2.97 -168.08 -0.50 -9.62 16 22 C 0.58 10.68 7.50 -12.86 -0.10 10.58 16 23 O -0.45 -10.63 11.97 -20.40 -0.24 -10.88 16 24 C -0.06 -0.97 6.78 -36.80 -0.25 -1.22 16 25 C -0.12 -1.77 10.63 -39.39 -0.42 -2.19 16 26 C -0.22 -2.29 10.87 -39.89 -0.43 -2.72 16 27 C -0.03 -0.25 12.08 29.63 0.36 0.11 16 28 O -0.16 -1.88 7.22 5.01 0.04 -1.85 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.38 7.52 8.38 -40.82 -0.34 7.18 16 34 H 0.08 1.21 8.00 -51.93 -0.42 0.80 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 1.10 4.18 -53.39 -0.22 0.87 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -36.13 355.65 -8.42 -44.55 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.29 Total: 7.08 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.83 Total: 4.41 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.15 Total: -51.42 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.48 Total: -26.50 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.13 -8.42 -44.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299669100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.216 kcal (2) G-P(sol) polarization free energy of solvation -36.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds