Wall clock time and date at job start Tue Mar 31 2020 13:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47062 * 2 1 4 4 C 1.50698 * 109.47178 * 239.99409 * 2 1 3 5 5 H 1.07994 * 120.00327 * 239.99994 * 4 2 1 6 6 C 1.37884 * 119.99943 * 60.00457 * 4 2 1 7 7 N 1.31518 * 119.99734 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99915 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47119 * 269.99600 * 8 6 4 10 10 H 1.48500 * 109.47337 * 30.00175 * 8 6 4 11 11 H 1.48505 * 109.46917 * 149.99654 * 8 6 4 12 12 N 1.46504 * 109.47021 * 119.99360 * 2 1 3 13 13 C 1.34774 * 120.00220 * 275.00243 * 12 2 1 14 14 O 1.21280 * 119.99804 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00054 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.58587 * 1.67054 * 15 13 12 17 17 C 1.53191 * 109.58560 * 241.38851 * 15 13 12 18 18 C 1.53041 * 109.31159 * 185.57455 * 17 15 13 19 19 C 1.53043 * 109.53741 * 61.36804 * 18 17 15 20 20 C 1.53192 * 109.30971 * 298.63114 * 19 18 17 21 21 N 1.46922 * 109.59032 * 122.09832 * 15 13 12 22 22 C 1.34781 * 120.62940 * 353.39386 * 21 15 13 23 23 O 1.21701 * 119.99732 * 6.58388 * 22 21 15 24 24 C 1.46658 * 120.00087 * 186.58201 * 22 21 15 25 25 C 1.36546 * 125.98452 * 187.19802 * 24 22 21 26 26 C 1.40367 * 106.70338 * 179.97438 * 25 24 22 27 27 C 1.35130 * 107.11636 * 359.97438 * 26 25 24 28 28 O 1.33933 * 108.76628 * 359.75685 * 27 26 25 29 29 H 1.09002 * 109.47395 * 300.00485 * 1 2 3 30 30 H 1.09004 * 109.47019 * 60.00354 * 1 2 3 31 31 H 1.09004 * 109.47501 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99900 * 180.02562 * 7 6 4 33 33 H 0.97004 * 119.99183 * 95.00215 * 12 2 1 34 34 H 1.09002 * 109.50033 * 305.52918 * 17 15 13 35 35 H 1.09006 * 109.49618 * 65.62689 * 17 15 13 36 36 H 1.08997 * 109.45652 * 181.38641 * 18 17 15 37 37 H 1.08998 * 109.46168 * 301.34400 * 18 17 15 38 38 H 1.08999 * 109.49714 * 58.58477 * 19 18 17 39 39 H 1.08997 * 109.49817 * 178.64875 * 19 18 17 40 40 H 1.08999 * 109.58808 * 174.41912 * 20 19 18 41 41 H 1.08999 * 109.58643 * 294.70883 * 20 19 18 42 42 H 1.07992 * 126.64926 * 359.95907 * 25 24 22 43 43 H 1.07999 * 126.43847 * 180.02562 * 26 25 24 44 44 H 1.08000 * 125.61454 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1198 -4.0078 9 1 3.6305 -0.5443 -4.4118 10 1 2.4879 -2.5656 -3.7120 11 1 1.3444 -0.9493 -5.1122 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8589 1.1588 2.4114 15 6 2.6498 -0.7282 3.5876 16 1 2.8844 -1.7639 3.3415 17 6 1.5743 -0.6905 4.6778 18 6 2.1401 -1.2889 5.9678 19 6 3.3342 -0.4551 6.4381 20 6 4.4296 -0.4902 5.3677 21 7 3.8547 -0.0529 4.0883 22 6 4.4219 0.9487 3.3872 23 8 3.8719 1.3824 2.3920 24 6 5.7020 1.5161 3.8237 25 6 6.3150 2.6149 3.2934 26 6 7.5077 2.7970 4.0107 27 6 7.5693 1.8142 4.9361 28 8 6.4767 1.0478 4.8240 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7082 1.1607 -3.4844 33 1 2.2489 -1.6317 1.1527 34 1 1.2738 0.3418 4.8569 35 1 0.7096 -1.2711 4.3562 36 1 1.3691 -1.2858 6.7382 37 1 2.4632 -2.3132 5.7818 38 1 3.0171 0.5750 6.6006 39 1 3.7217 -0.8677 7.3696 40 1 5.2402 0.1806 5.6523 41 1 4.8129 -1.5059 5.2703 42 1 5.9527 3.2253 2.4796 43 1 8.2383 3.5766 3.8532 44 1 8.3660 1.6729 5.6514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299669100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:51 Heat of formation + Delta-G solvation = -54.860504 kcal Electronic energy + Delta-G solvation = -28227.314937 eV Core-core repulsion = 24339.445802 eV Total energy + Delta-G solvation = -3887.869134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.73827 -41.80620 -39.46238 -38.46147 -36.56978 -34.39148 -34.27004 -33.79722 -32.69940 -30.76816 -30.59095 -27.36463 -26.96637 -24.94441 -24.32238 -22.94448 -22.62265 -21.79094 -21.17048 -20.59999 -19.27883 -18.35935 -17.77641 -17.45481 -17.34157 -17.09340 -16.85161 -15.96603 -15.90489 -15.67603 -15.19564 -15.10638 -14.78067 -14.52298 -14.40446 -14.19218 -14.02124 -13.91679 -13.72226 -13.58319 -13.31425 -12.97165 -12.87517 -12.71017 -12.51628 -12.27324 -12.13317 -12.05755 -11.74812 -11.55918 -11.13037 -11.04523 -10.89769 -10.60002 -10.36959 -9.94868 -9.56769 -9.49951 -8.17311 -6.35151 0.03821 1.35134 1.40999 1.43291 1.43602 1.53890 1.88479 2.02971 2.34611 2.40856 2.60380 3.12233 3.52596 3.78576 3.83104 3.90332 3.93575 4.06340 4.10671 4.12296 4.23752 4.45799 4.53661 4.73808 4.75990 4.80654 4.84823 4.88935 4.91078 4.95692 5.06950 5.10227 5.11926 5.20765 5.36445 5.42952 5.44882 5.51016 5.66093 5.72055 5.84176 5.96664 6.12634 6.23824 6.73614 6.97040 7.09689 7.33278 7.77258 8.89524 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.004185 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.711579 B = 6689.558251 C = 8069.875162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.279 3.721 3 H -0.016 1.016 4 C -0.545 4.545 5 H 0.070 0.930 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.976 3.024 9 H -0.280 1.280 10 H -0.257 1.257 11 H -0.280 1.280 12 N -0.709 5.709 13 C 0.507 3.493 14 O -0.570 6.570 15 C 0.133 3.867 16 H 0.118 0.882 17 C -0.119 4.119 18 C -0.109 4.109 19 C -0.131 4.131 20 C 0.092 3.908 21 N -0.594 5.594 22 C 0.568 3.432 23 O -0.525 6.525 24 C -0.096 4.096 25 C -0.140 4.140 26 C -0.233 4.233 27 C 0.010 3.990 28 O -0.154 6.154 29 H 0.008 0.992 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.265 0.735 33 H 0.399 0.601 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.181 0.819 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.076 -6.784 23.165 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.175 3.825 3 H 0.002 0.998 4 C -0.583 4.583 5 H 0.088 0.912 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.206 1.206 10 H -0.180 1.180 11 H -0.205 1.205 12 N -0.360 5.360 13 C 0.294 3.706 14 O -0.449 6.449 15 C 0.027 3.973 16 H 0.136 0.864 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.169 4.169 20 C -0.027 4.027 21 N -0.329 5.329 22 C 0.356 3.644 23 O -0.403 6.403 24 C -0.148 4.148 25 C -0.161 4.161 26 C -0.251 4.251 27 C -0.058 4.058 28 O -0.050 6.050 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.233 0.767 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.153 0.847 43 H 0.199 0.801 44 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 12.376 -5.866 22.701 26.513 hybrid contribution 0.035 0.306 -1.591 1.621 sum 12.411 -5.560 21.110 25.111 Atomic orbital electron populations 1.21857 0.98244 0.99420 0.99221 1.18175 0.90912 0.91365 0.82005 0.99803 1.21542 1.32406 1.13375 0.91002 0.91226 1.25874 0.94892 0.95648 1.02462 1.70084 1.37157 1.24103 1.24495 0.85300 0.77692 0.79231 0.77817 1.20645 1.18034 1.20492 1.46148 1.66498 1.13665 1.09653 1.20625 0.77896 0.86889 0.85208 1.90622 1.51472 1.17545 1.85263 1.21350 0.86820 0.96667 0.92460 0.86394 1.21851 0.96728 1.01933 0.95211 1.21536 0.98131 0.99977 0.94987 1.21957 0.95470 1.00618 0.98840 1.22523 0.97117 1.02678 0.80422 1.47896 1.26721 1.34764 1.23547 1.17464 0.82966 0.80021 0.83900 1.91251 1.60714 1.60554 1.27733 1.21694 0.95636 1.00987 0.96476 1.22173 0.96470 0.96508 1.00985 1.22147 0.99134 1.04314 0.99549 1.25560 0.89499 0.90055 1.00718 1.84187 1.28560 1.49015 1.43235 0.97321 0.91713 0.93721 0.92617 0.76713 0.93563 0.89388 0.89382 0.89060 0.93290 0.86755 0.87265 0.88418 0.84673 0.80115 0.71940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.12 9.26 71.98 0.67 -6.45 16 2 C 0.28 16.23 2.56 44.24 0.11 16.34 16 3 H -0.02 -1.13 7.58 -2.39 -0.02 -1.15 16 4 C -0.55 -31.58 8.73 25.60 0.22 -31.35 16 5 H 0.07 3.78 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -56.67 11.32 21.45 0.24 -56.43 16 8 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 N -0.71 -33.69 5.07 -446.11 -2.26 -35.95 16 13 C 0.51 23.32 4.77 87.66 0.42 23.74 16 14 O -0.57 -32.47 13.56 21.44 0.29 -32.18 16 15 C 0.13 4.19 3.31 44.23 0.15 4.34 16 16 H 0.12 2.90 7.92 -2.39 -0.02 2.89 16 17 C -0.12 -3.01 5.33 30.67 0.16 -2.85 16 18 C -0.11 -1.64 5.88 30.62 0.18 -1.46 16 19 C -0.13 -1.92 6.08 30.67 0.19 -1.74 16 20 C 0.09 1.71 6.13 86.36 0.53 2.24 16 21 N -0.59 -18.08 2.97 -803.88 -2.39 -20.47 16 22 C 0.57 22.23 7.50 86.44 0.65 22.88 16 23 O -0.52 -27.41 11.97 20.12 0.24 -27.17 16 24 C -0.10 -3.00 6.78 24.07 0.16 -2.84 16 25 C -0.14 -4.20 10.63 22.39 0.24 -3.96 16 26 C -0.23 -4.39 10.87 22.07 0.24 -4.15 16 27 C 0.01 0.14 12.08 67.10 0.81 0.95 16 28 O -0.15 -3.20 7.22 -5.00 -0.04 -3.23 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 3.88 6.07 -2.39 -0.01 3.87 16 31 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.40 15.91 8.38 -92.71 -0.78 15.14 16 34 H 0.05 1.48 8.00 -2.39 -0.02 1.46 16 35 H 0.09 2.05 8.14 -2.38 -0.02 2.04 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 1.97 4.18 -25.57 -0.11 1.86 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.18 2.30 8.06 -2.91 -0.02 2.27 16 44 H 0.27 0.34 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -90.19 355.65 3.44 -86.76 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.15 Total: 25.17 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.18 Total: 16.76 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -4.41 Total: -112.85 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: 0.50 Total: -62.59 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -90.19 3.44 -86.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299669100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.896 kcal (2) G-P(sol) polarization free energy of solvation -90.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds