Wall clock time and date at job start Tue Mar 31 2020 13:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46729 * 2 1 4 4 C 1.50701 * 109.46838 * 119.99631 * 2 1 3 5 5 H 1.08004 * 120.00049 * 120.00134 * 4 2 1 6 6 C 1.37880 * 120.00292 * 299.99816 * 4 2 1 7 7 N 1.31513 * 119.99694 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99938 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47215 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46869 * 120.00134 * 8 6 4 11 11 H 1.48497 * 109.47516 * 240.00352 * 8 6 4 12 12 N 1.46492 * 109.47230 * 239.99739 * 2 1 3 13 13 C 1.34780 * 119.99864 * 85.00121 * 12 2 1 14 14 O 1.21277 * 120.00374 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99809 * 180.02562 * 13 12 2 16 16 H 1.08997 * 109.58906 * 349.79800 * 15 13 12 17 17 C 1.53193 * 109.58801 * 110.08177 * 15 13 12 18 18 C 1.53037 * 109.31091 * 174.41961 * 17 15 13 19 19 C 1.53040 * 109.53939 * 298.63205 * 18 17 15 20 20 C 1.53190 * 109.30797 * 61.36912 * 19 18 17 21 21 N 1.46922 * 109.58471 * 229.36960 * 15 13 12 22 22 C 1.34778 * 120.63335 * 6.58581 * 21 15 13 23 23 O 1.21703 * 119.99634 * 6.31106 * 22 21 15 24 24 C 1.46653 * 120.00324 * 186.31421 * 22 21 15 25 25 C 1.36549 * 125.98948 * 187.35859 * 24 22 21 26 26 C 1.40365 * 106.70610 * 179.85242 * 25 24 22 27 27 C 1.35124 * 107.11848 * 0.41034 * 26 25 24 28 28 O 1.33938 * 108.76790 * 359.74675 * 27 26 25 29 29 H 1.09002 * 109.46747 * 59.99739 * 1 2 3 30 30 H 1.08989 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46464 * 300.00430 * 1 2 3 32 32 H 0.97002 * 119.99490 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00287 * 265.27553 * 12 2 1 34 34 H 1.09000 * 109.49980 * 294.37187 * 17 15 13 35 35 H 1.09005 * 109.49712 * 54.46866 * 17 15 13 36 36 H 1.09003 * 109.46052 * 58.65913 * 18 17 15 37 37 H 1.09007 * 109.45966 * 178.62826 * 18 17 15 38 38 H 1.09000 * 109.49762 * 181.31602 * 19 18 17 39 39 H 1.09002 * 109.50011 * 301.41549 * 19 18 17 40 40 H 1.09000 * 109.59012 * 65.15266 * 20 19 18 41 41 H 1.09010 * 109.58550 * 185.57469 * 20 19 18 42 42 H 1.08001 * 126.64300 * 359.96316 * 25 24 22 43 43 H 1.08005 * 126.43660 * 180.15620 * 26 25 24 44 44 H 1.07999 * 125.61627 * 179.71266 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1464 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8162 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6490 -0.7289 -3.5876 16 1 3.0243 -1.7146 -3.3129 17 6 1.5061 -0.8776 -4.5968 18 6 2.0527 -1.4730 -5.8964 19 6 3.1015 -0.5299 -6.4901 20 6 4.2625 -0.3773 -5.5023 21 7 3.7260 0.0568 -4.2053 22 6 4.2123 1.1551 -3.5939 23 8 3.8420 1.4401 -2.4702 24 6 5.1875 2.0066 -4.2827 25 6 5.8625 3.0592 -3.7341 26 6 6.6868 3.5803 -4.7437 27 6 6.4747 2.8381 -5.8528 28 8 5.5706 1.8909 -5.5711 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.7088 1.1614 3.4844 33 1 2.2453 -1.6327 -1.1535 34 1 0.7423 -1.5384 -4.1868 35 1 1.0704 0.1008 -4.7998 36 1 2.5101 -2.4403 -5.6884 37 1 1.2369 -1.6025 -6.6078 38 1 3.4734 -0.9433 -7.4275 39 1 2.6509 0.4452 -6.6753 40 1 4.7712 -1.3342 -5.3856 41 1 4.9642 0.3687 -5.8757 42 1 5.7796 3.4197 -2.7194 43 1 7.3605 4.4195 -4.6524 44 1 6.9547 2.9850 -6.8091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299669102.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:55 Heat of formation + Delta-G solvation = -26.453596 kcal Electronic energy + Delta-G solvation = -28214.885862 eV Core-core repulsion = 24328.248544 eV Total energy + Delta-G solvation = -3886.637318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78785 -40.45173 -37.77414 -37.28172 -34.54165 -33.43187 -32.71188 -32.26177 -31.45729 -29.74480 -28.68073 -25.84631 -25.12879 -23.86868 -23.11619 -21.90805 -21.08891 -20.74803 -19.64351 -19.19978 -17.87201 -17.01683 -16.48704 -16.25921 -15.95455 -15.48170 -14.99485 -14.85928 -14.52957 -14.28313 -13.96178 -13.86354 -13.58374 -13.32359 -13.09265 -12.92540 -12.72427 -12.50791 -12.30579 -12.14817 -11.56085 -11.48613 -11.14193 -11.00565 -10.94257 -10.88627 -10.65099 -10.58031 -10.22236 -10.12971 -10.09483 -9.43930 -8.91609 -8.83012 -8.63895 -8.49740 -8.40884 -7.57606 -6.00700 -4.08550 1.11895 2.33562 2.50072 2.97876 3.30344 3.37608 3.38126 3.40784 3.84464 4.07660 4.42930 4.58344 4.66979 4.76741 4.83190 4.88249 4.94200 5.07630 5.16963 5.31459 5.35840 5.38422 5.62590 5.62910 5.66575 5.73885 5.77601 5.78066 5.89214 5.98213 6.07928 6.26257 6.29200 6.57592 6.79763 6.96189 7.08810 7.29939 7.43313 7.66841 7.72675 7.84018 8.08337 8.28858 8.33077 8.86148 8.94472 9.39380 9.59648 11.05513 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.003974 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.173088 B = 7043.873148 C = 8275.630141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.051 0.949 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.708 5.708 13 C 0.513 3.487 14 O -0.523 6.523 15 C 0.129 3.871 16 H 0.085 0.915 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.134 4.134 20 C 0.095 3.905 21 N -0.600 5.600 22 C 0.581 3.419 23 O -0.449 6.449 24 C -0.061 4.061 25 C -0.126 4.126 26 C -0.219 4.219 27 C -0.030 4.030 28 O -0.161 6.161 29 H 0.013 0.987 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.262 0.738 33 H 0.383 0.617 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.106 -2.671 -21.409 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.168 3.832 3 H 0.069 0.931 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.356 5.356 13 C 0.296 3.704 14 O -0.399 6.399 15 C 0.022 3.978 16 H 0.103 0.897 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.172 4.172 20 C -0.027 4.027 21 N -0.337 5.337 22 C 0.367 3.633 23 O -0.321 6.321 24 C -0.113 4.113 25 C -0.147 4.147 26 C -0.239 4.239 27 C -0.098 4.098 28 O -0.058 6.058 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.215 0.785 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.178 0.822 43 H 0.171 0.829 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.471 -1.739 -20.803 22.528 hybrid contribution 0.627 -0.730 0.819 1.263 sum 9.097 -2.469 -19.984 22.096 Atomic orbital electron populations 1.22076 0.98817 0.98815 1.00725 1.18665 0.90556 0.94221 0.79807 0.93150 1.21274 1.31930 1.12948 0.90449 0.92237 1.24879 0.94962 0.94995 0.98952 1.69926 1.36205 1.22573 1.23512 0.86426 0.78538 0.79527 0.82773 1.19811 1.20953 1.20963 1.46350 1.66074 1.12978 1.10246 1.19646 0.79344 0.87287 0.84083 1.90669 1.49747 1.15134 1.84345 1.21264 0.88153 0.94787 0.93582 0.89685 1.21816 0.96665 1.02899 0.94651 1.21527 0.98648 0.98642 0.96695 1.21915 0.96460 1.00731 0.98108 1.22241 0.96557 1.01438 0.82449 1.47616 1.36907 1.27312 1.21832 1.16833 0.80511 0.79982 0.86002 1.91218 1.53715 1.70484 1.16660 1.22357 1.03940 1.02347 0.82613 1.22011 0.96194 0.94956 1.01496 1.21828 1.04712 1.04065 0.93252 1.24451 0.93968 0.90657 1.00748 1.84156 1.47779 1.46138 1.27724 0.96820 0.95679 0.89309 0.92804 0.78508 0.90125 0.90447 0.91577 0.91302 0.90714 0.91303 0.91354 0.87240 0.82225 0.82868 0.77783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.26 37.16 0.34 -3.47 16 2 C 0.27 7.33 2.56 -69.08 -0.18 7.16 16 3 H 0.05 1.62 7.58 -51.93 -0.39 1.23 16 4 C -0.53 -14.77 8.73 -34.44 -0.30 -15.08 16 5 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 6 C 0.06 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -26.07 11.32 55.43 0.63 -25.44 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 N -0.71 -15.96 5.07 -54.93 -0.28 -16.24 16 13 C 0.51 11.10 4.91 -10.98 -0.05 11.04 16 14 O -0.52 -13.59 13.40 -20.11 -0.27 -13.86 16 15 C 0.13 2.03 3.30 -68.75 -0.23 1.80 16 16 H 0.09 1.15 7.96 -51.93 -0.41 0.73 16 17 C -0.12 -1.57 5.35 -26.61 -0.14 -1.72 16 18 C -0.12 -1.09 5.88 -26.69 -0.16 -1.25 16 19 C -0.13 -1.22 6.08 -26.61 -0.16 -1.38 16 20 C 0.09 1.02 6.32 -3.71 -0.02 1.00 16 21 N -0.60 -9.19 2.97 -168.07 -0.50 -9.69 16 22 C 0.58 10.76 7.24 -12.86 -0.09 10.66 16 23 O -0.45 -10.64 12.14 -20.48 -0.25 -10.89 16 24 C -0.06 -0.93 6.82 -36.80 -0.25 -1.18 16 25 C -0.13 -1.79 10.63 -39.39 -0.42 -2.21 16 26 C -0.22 -2.29 10.87 -39.89 -0.43 -2.72 16 27 C -0.03 -0.26 12.08 29.62 0.36 0.09 16 28 O -0.16 -1.89 7.15 4.97 0.04 -1.85 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.60 8.14 -51.94 -0.42 0.17 16 31 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.38 7.47 8.41 -40.82 -0.34 7.13 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.11 1.15 3.81 -54.92 -0.21 0.94 16 42 H 0.16 2.36 8.06 -52.49 -0.42 1.93 16 43 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 44 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -36.18 355.59 -8.42 -44.60 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.29 Total: 7.04 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.83 Total: 4.48 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.15 Total: -51.37 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.48 Total: -26.60 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.18 -8.42 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299669102.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.145 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds