Wall clock time and date at job start Tue Mar 31 2020 13:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46729 * 2 1 4 4 C 1.50701 * 109.46838 * 119.99631 * 2 1 3 5 5 H 1.08004 * 120.00049 * 120.00134 * 4 2 1 6 6 C 1.37880 * 120.00292 * 299.99816 * 4 2 1 7 7 N 1.31513 * 119.99694 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99938 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47215 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46869 * 120.00134 * 8 6 4 11 11 H 1.48497 * 109.47516 * 240.00352 * 8 6 4 12 12 N 1.46492 * 109.47230 * 239.99739 * 2 1 3 13 13 C 1.34780 * 119.99864 * 85.00121 * 12 2 1 14 14 O 1.21277 * 120.00374 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99809 * 180.02562 * 13 12 2 16 16 H 1.08997 * 109.58906 * 349.79800 * 15 13 12 17 17 C 1.53193 * 109.58801 * 110.08177 * 15 13 12 18 18 C 1.53037 * 109.31091 * 174.41961 * 17 15 13 19 19 C 1.53040 * 109.53939 * 298.63205 * 18 17 15 20 20 C 1.53190 * 109.30797 * 61.36912 * 19 18 17 21 21 N 1.46922 * 109.58471 * 229.36960 * 15 13 12 22 22 C 1.34778 * 120.63335 * 6.58581 * 21 15 13 23 23 O 1.21703 * 119.99634 * 6.31106 * 22 21 15 24 24 C 1.46653 * 120.00324 * 186.31421 * 22 21 15 25 25 C 1.36549 * 125.98948 * 187.35859 * 24 22 21 26 26 C 1.40365 * 106.70610 * 179.85242 * 25 24 22 27 27 C 1.35124 * 107.11848 * 0.41034 * 26 25 24 28 28 O 1.33938 * 108.76790 * 359.74675 * 27 26 25 29 29 H 1.09002 * 109.46747 * 59.99739 * 1 2 3 30 30 H 1.08989 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46464 * 300.00430 * 1 2 3 32 32 H 0.97002 * 119.99490 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00287 * 265.27553 * 12 2 1 34 34 H 1.09000 * 109.49980 * 294.37187 * 17 15 13 35 35 H 1.09005 * 109.49712 * 54.46866 * 17 15 13 36 36 H 1.09003 * 109.46052 * 58.65913 * 18 17 15 37 37 H 1.09007 * 109.45966 * 178.62826 * 18 17 15 38 38 H 1.09000 * 109.49762 * 181.31602 * 19 18 17 39 39 H 1.09002 * 109.50011 * 301.41549 * 19 18 17 40 40 H 1.09000 * 109.59012 * 65.15266 * 20 19 18 41 41 H 1.09010 * 109.58550 * 185.57469 * 20 19 18 42 42 H 1.08001 * 126.64300 * 359.96316 * 25 24 22 43 43 H 1.08005 * 126.43660 * 180.15620 * 26 25 24 44 44 H 1.07999 * 125.61627 * 179.71266 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1464 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8162 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6490 -0.7289 -3.5876 16 1 3.0243 -1.7146 -3.3129 17 6 1.5061 -0.8776 -4.5968 18 6 2.0527 -1.4730 -5.8964 19 6 3.1015 -0.5299 -6.4901 20 6 4.2625 -0.3773 -5.5023 21 7 3.7260 0.0568 -4.2053 22 6 4.2123 1.1551 -3.5939 23 8 3.8420 1.4401 -2.4702 24 6 5.1875 2.0066 -4.2827 25 6 5.8625 3.0592 -3.7341 26 6 6.6868 3.5803 -4.7437 27 6 6.4747 2.8381 -5.8528 28 8 5.5706 1.8909 -5.5711 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.7088 1.1614 3.4844 33 1 2.2453 -1.6327 -1.1535 34 1 0.7423 -1.5384 -4.1868 35 1 1.0704 0.1008 -4.7998 36 1 2.5101 -2.4403 -5.6884 37 1 1.2369 -1.6025 -6.6078 38 1 3.4734 -0.9433 -7.4275 39 1 2.6509 0.4452 -6.6753 40 1 4.7712 -1.3342 -5.3856 41 1 4.9642 0.3687 -5.8757 42 1 5.7796 3.4197 -2.7194 43 1 7.3605 4.4195 -4.6524 44 1 6.9547 2.9850 -6.8091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299669102.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:54 Heat of formation + Delta-G solvation = -52.072763 kcal Electronic energy + Delta-G solvation = -28215.996793 eV Core-core repulsion = 24328.248544 eV Total energy + Delta-G solvation = -3887.748249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.74092 -41.81559 -39.45429 -38.47185 -36.57753 -34.40914 -34.26258 -33.78792 -32.70436 -30.78016 -30.57234 -27.36858 -26.96062 -24.93315 -24.32849 -22.94065 -22.64607 -21.78155 -21.18800 -20.59749 -19.28331 -18.40720 -17.74190 -17.57610 -17.29709 -17.03118 -16.81416 -16.03888 -15.90502 -15.63733 -15.25260 -15.16426 -14.75461 -14.59876 -14.42127 -14.21055 -14.00450 -13.85888 -13.69742 -13.58055 -13.24794 -12.98404 -12.83647 -12.69622 -12.52715 -12.28668 -12.13167 -12.05244 -11.74691 -11.51872 -11.11564 -11.06784 -10.92147 -10.61650 -10.39049 -9.97512 -9.57158 -9.45052 -8.17701 -6.35465 0.05442 1.37232 1.41247 1.42536 1.44142 1.55131 1.84905 2.12867 2.32248 2.35999 2.59773 3.11986 3.53343 3.78843 3.83702 3.90259 3.94306 4.07321 4.10283 4.12468 4.24152 4.45219 4.53285 4.74791 4.75616 4.81208 4.85312 4.89306 4.90348 4.96717 5.07340 5.09560 5.13421 5.22034 5.37087 5.43717 5.44867 5.53268 5.65664 5.71281 5.86507 5.96078 6.12053 6.26344 6.73516 6.97837 7.09310 7.33056 7.74590 8.89345 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.003974 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.173088 B = 7043.873148 C = 8275.630141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.279 3.721 3 H -0.016 1.016 4 C -0.545 4.545 5 H 0.071 0.929 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.976 3.024 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.708 5.708 13 C 0.507 3.493 14 O -0.572 6.572 15 C 0.134 3.866 16 H 0.117 0.883 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.129 4.129 20 C 0.087 3.913 21 N -0.597 5.597 22 C 0.569 3.431 23 O -0.525 6.525 24 C -0.095 4.095 25 C -0.141 4.141 26 C -0.232 4.232 27 C 0.008 3.992 28 O -0.154 6.154 29 H 0.007 0.993 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.265 0.735 33 H 0.400 0.600 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.136 0.864 43 H 0.182 0.818 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.127 -5.289 -24.547 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.175 3.825 3 H 0.002 0.998 4 C -0.583 4.583 5 H 0.089 0.911 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.800 3.200 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.358 5.358 13 C 0.293 3.707 14 O -0.452 6.452 15 C 0.027 3.973 16 H 0.134 0.866 17 C -0.157 4.157 18 C -0.147 4.147 19 C -0.167 4.167 20 C -0.032 4.032 21 N -0.332 5.332 22 C 0.358 3.642 23 O -0.402 6.402 24 C -0.146 4.146 25 C -0.162 4.162 26 C -0.251 4.251 27 C -0.061 4.061 28 O -0.051 6.051 29 H 0.026 0.974 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.154 0.846 43 H 0.199 0.801 44 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 10.504 -4.427 -24.026 26.593 hybrid contribution 0.088 0.211 1.662 1.678 sum 10.592 -4.216 -22.364 25.102 Atomic orbital electron populations 1.21859 0.98245 0.99445 0.99208 1.18187 0.90917 0.91374 0.82020 0.99796 1.21580 1.32370 1.13363 0.90965 0.91138 1.25876 0.94904 0.95634 1.02482 1.70092 1.37231 1.24098 1.24442 0.85241 0.78191 0.78427 0.78116 1.18293 1.21084 1.19869 1.46108 1.66496 1.13626 1.09578 1.20655 0.77899 0.86857 0.85280 1.90632 1.51470 1.17696 1.85364 1.21299 0.89617 0.94887 0.91466 0.86557 1.21854 0.95776 1.01916 0.96114 1.21543 0.99399 0.99220 0.94520 1.21932 0.95576 1.00138 0.99067 1.22637 0.97521 1.02668 0.80405 1.47850 1.36000 1.26212 1.23093 1.17354 0.80509 0.80780 0.85582 1.91174 1.56901 1.72310 1.19807 1.21711 1.05341 1.03230 0.84344 1.22172 0.97115 0.95220 1.01650 1.22142 1.04989 1.05467 0.92483 1.25577 0.90862 0.87667 1.01962 1.84145 1.48331 1.46959 1.25628 0.97354 0.93682 0.91712 0.92622 0.76594 0.89156 0.93534 0.89167 0.89295 0.86853 0.93122 0.88672 0.86790 0.84568 0.80080 0.72019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.11 9.26 71.99 0.67 -6.44 16 2 C 0.28 16.16 2.56 44.25 0.11 16.28 16 3 H -0.02 -1.12 7.58 -2.39 -0.02 -1.14 16 4 C -0.54 -31.48 8.73 25.60 0.22 -31.26 16 5 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -56.59 11.32 21.45 0.24 -56.35 16 8 Si 0.98 44.68 29.54 68.60 2.03 46.71 16 9 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 12 N -0.71 -33.51 5.07 -446.10 -2.26 -35.77 16 13 C 0.51 23.26 4.91 87.66 0.43 23.69 16 14 O -0.57 -32.53 13.40 21.52 0.29 -32.24 16 15 C 0.13 4.21 3.30 44.23 0.15 4.35 16 16 H 0.12 2.92 7.96 -2.39 -0.02 2.90 16 17 C -0.12 -2.94 5.35 30.67 0.16 -2.77 16 18 C -0.11 -1.62 5.88 30.62 0.18 -1.44 16 19 C -0.13 -1.88 6.08 30.67 0.19 -1.69 16 20 C 0.09 1.64 6.32 86.36 0.55 2.18 16 21 N -0.60 -18.30 2.97 -803.88 -2.39 -20.69 16 22 C 0.57 22.45 7.24 86.44 0.63 23.08 16 23 O -0.52 -27.40 12.14 20.18 0.24 -27.16 16 24 C -0.09 -2.99 6.82 24.07 0.16 -2.82 16 25 C -0.14 -4.21 10.63 22.39 0.24 -3.97 16 26 C -0.23 -4.40 10.87 22.07 0.24 -4.16 16 27 C 0.01 0.10 12.08 67.10 0.81 0.91 16 28 O -0.15 -3.28 7.15 -5.14 -0.04 -3.32 16 29 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 3.88 6.07 -2.39 -0.01 3.87 16 32 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.40 15.84 8.41 -92.71 -0.78 15.06 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.04 8.14 -2.38 -0.02 1.03 16 38 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 2.07 3.81 -49.86 -0.19 1.88 16 42 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 43 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 44 H 0.26 0.42 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -90.06 355.59 3.36 -86.70 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.06 Total: 25.13 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 5.18 Total: 16.99 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -4.41 Total: -112.81 kcal Atomic # 8 Polarization: -63.22 SS G_CDS: 0.50 Total: -62.72 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -90.06 3.36 -86.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299669102.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.627 kcal (2) G-P(sol) polarization free energy of solvation -90.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds