Wall clock time and date at job start Tue Mar 31 2020 13:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47050 * 2 1 4 4 C 1.50695 * 109.47597 * 120.00763 * 2 1 3 5 5 H 1.07995 * 120.00548 * 119.99562 * 4 2 1 6 6 C 1.37880 * 119.99767 * 299.99617 * 4 2 1 7 7 N 1.31516 * 120.00084 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00323 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46941 * 90.00202 * 8 6 4 10 10 H 1.48494 * 109.47560 * 210.00359 * 8 6 4 11 11 H 1.48500 * 109.47230 * 330.00717 * 8 6 4 12 12 N 1.46509 * 109.46985 * 240.00664 * 2 1 3 13 13 C 1.34770 * 120.00022 * 84.72103 * 12 2 1 14 14 O 1.21282 * 120.00237 * 0.27544 * 13 12 2 15 15 C 1.50703 * 119.99900 * 180.27694 * 13 12 2 16 16 H 1.08991 * 109.58516 * 1.70724 * 15 13 12 17 17 C 1.53191 * 109.58703 * 241.42421 * 15 13 12 18 18 C 1.53035 * 109.31338 * 185.57938 * 17 15 13 19 19 C 1.53038 * 109.53866 * 61.36735 * 18 17 15 20 20 C 1.53192 * 109.31149 * 298.62973 * 19 18 17 21 21 N 1.46932 * 108.77377 * 54.64098 * 20 19 18 22 22 C 1.34775 * 120.63532 * 126.38950 * 21 20 19 23 23 O 1.21692 * 120.00180 * 186.58797 * 22 21 20 24 24 C 1.46659 * 119.99800 * 6.57976 * 22 21 20 25 25 C 1.36544 * 125.98951 * 187.19435 * 24 22 21 26 26 C 1.40365 * 106.70567 * 179.97438 * 25 24 22 27 27 C 1.35119 * 107.11750 * 0.02562 * 26 25 24 28 28 O 1.33928 * 108.77133 * 359.75510 * 27 26 25 29 29 H 1.09003 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47228 * 299.99259 * 1 2 3 31 31 H 1.08998 * 109.47575 * 59.99336 * 1 2 3 32 32 H 0.97002 * 120.00130 * 179.97438 * 7 6 4 33 33 H 0.97001 * 119.99713 * 265.00267 * 12 2 1 34 34 H 1.09006 * 109.49510 * 305.52897 * 17 15 13 35 35 H 1.08994 * 109.49574 * 65.62242 * 17 15 13 36 36 H 1.08997 * 109.45964 * 181.38539 * 18 17 15 37 37 H 1.09001 * 109.45969 * 301.34512 * 18 17 15 38 38 H 1.08997 * 109.50199 * 58.58872 * 19 18 17 39 39 H 1.09003 * 109.49631 * 178.65640 * 19 18 17 40 40 H 1.08998 * 109.58718 * 174.42211 * 20 19 18 41 41 H 1.08999 * 109.59381 * 294.70843 * 20 19 18 42 42 H 1.08002 * 126.64121 * 359.96806 * 25 24 22 43 43 H 1.07998 * 126.43640 * 180.02562 * 26 25 24 44 44 H 1.08003 * 125.61512 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 0.9429 0.8294 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.6299 -0.5461 4.4122 10 1 1.3434 -0.9497 5.1119 11 1 2.4861 -2.5664 3.7117 12 7 2.0183 -0.6905 -1.1963 13 6 2.1416 -0.0195 -2.3585 14 8 1.8532 1.1573 -2.4129 15 6 2.6380 -0.7313 -3.5906 16 1 2.8163 -1.7813 -3.3590 17 6 3.9408 -0.0825 -4.0688 18 6 4.3652 -0.7171 -5.3951 19 6 3.2856 -0.4674 -6.4506 20 6 1.9754 -1.1207 -5.9995 21 7 1.6357 -0.6229 -4.6595 22 6 0.4277 -0.0774 -4.4153 23 8 0.1999 0.4391 -3.3372 24 6 -0.6123 -0.1061 -5.4490 25 6 -1.8219 0.5243 -5.3879 26 6 -2.4924 0.2278 -6.5849 27 6 -1.6733 -0.5610 -7.3146 28 8 -0.5394 -0.7559 -6.6291 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.7083 1.1606 3.4845 33 1 2.2489 -1.6317 -1.1528 34 1 3.7839 0.9868 -4.2108 35 1 4.7206 -0.2404 -3.3238 36 1 5.3050 -0.2744 -5.7251 37 1 4.4979 -1.7903 -5.2581 38 1 3.1349 0.6054 -6.5703 39 1 3.5993 -0.8990 -7.4011 40 1 1.1792 -0.8627 -6.6978 41 1 2.0982 -2.2033 -5.9692 42 1 -2.1912 1.1331 -4.5758 43 1 -3.4777 0.5666 -6.8691 44 1 -1.8946 -0.9641 -8.2919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299669103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:58 Heat of formation + Delta-G solvation = -29.483229 kcal Electronic energy + Delta-G solvation = -28270.358570 eV Core-core repulsion = 24383.589878 eV Total energy + Delta-G solvation = -3886.768693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.81332 -40.45594 -37.77086 -37.27563 -34.51771 -33.44667 -32.74108 -32.24200 -31.45607 -29.77442 -28.62230 -25.86448 -25.08072 -23.87682 -23.10207 -21.93206 -21.06756 -20.76806 -19.65415 -19.16839 -17.84735 -17.02834 -16.45322 -16.36340 -15.99356 -15.43925 -14.99927 -14.88945 -14.47183 -14.23270 -13.94962 -13.86155 -13.55250 -13.30189 -13.01412 -12.97858 -12.74610 -12.69103 -12.23471 -12.14156 -11.56859 -11.45627 -11.14068 -10.96856 -10.91582 -10.88948 -10.67584 -10.55720 -10.18637 -10.11353 -10.06976 -9.38536 -8.87054 -8.84172 -8.65622 -8.52548 -8.35967 -7.57765 -6.00162 -4.09060 1.07853 2.29762 2.48314 2.95164 3.30382 3.30640 3.36757 3.38957 3.89669 4.08789 4.42742 4.55329 4.66391 4.75952 4.82968 4.85881 4.92469 5.06849 5.17430 5.31101 5.36028 5.38181 5.60338 5.61853 5.67012 5.72172 5.76145 5.78385 5.89673 5.99645 6.02414 6.25646 6.29793 6.53398 6.76073 7.06586 7.30918 7.39171 7.40235 7.69925 7.77888 7.86295 8.08675 8.29626 8.35886 8.86955 8.95472 9.41806 9.60073 11.05490 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.003871 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.040749 B = 7231.720422 C = 8517.024433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.272 3.728 3 H 0.045 0.955 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.513 3.487 14 O -0.520 6.520 15 C 0.128 3.872 16 H 0.084 0.916 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.135 4.135 20 C 0.099 3.901 21 N -0.599 5.599 22 C 0.579 3.421 23 O -0.449 6.449 24 C -0.064 4.064 25 C -0.125 4.125 26 C -0.220 4.220 27 C -0.028 4.028 28 O -0.162 6.162 29 H 0.018 0.982 30 H 0.083 0.917 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.383 0.617 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -6.142 -23.047 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.171 3.829 3 H 0.063 0.937 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.359 5.359 13 C 0.296 3.704 14 O -0.396 6.396 15 C 0.022 3.978 16 H 0.102 0.898 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.173 4.173 20 C -0.023 4.023 21 N -0.335 5.335 22 C 0.365 3.635 23 O -0.321 6.321 24 C -0.116 4.116 25 C -0.146 4.146 26 C -0.239 4.239 27 C -0.096 4.096 28 O -0.059 6.059 29 H 0.038 0.962 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.214 0.786 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.178 0.822 43 H 0.171 0.829 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.232 -5.017 -22.361 22.918 hybrid contribution 0.127 -0.958 0.701 1.194 sum 0.359 -5.975 -21.660 22.472 Atomic orbital electron populations 1.22014 0.98424 0.98688 1.01137 1.18618 0.91122 0.93605 0.79585 0.93727 1.21272 1.32152 1.13054 0.90564 0.92287 1.24885 0.94922 0.95010 0.98938 1.69931 1.35931 1.22585 1.23601 0.86488 0.78537 0.79835 0.82429 1.20650 1.21154 1.19931 1.46400 1.65918 1.13047 1.10489 1.19619 0.78843 0.87999 0.83894 1.90661 1.48247 1.16445 1.84203 1.21329 0.88828 1.00224 0.87432 0.89764 1.21817 0.95276 1.01534 0.97438 1.21522 0.98263 1.01022 0.94692 1.21933 0.94926 1.01764 0.98699 1.22128 0.98350 0.98508 0.83273 1.47680 1.13007 1.61949 1.10856 1.16965 0.81016 0.79509 0.85986 1.91274 1.78264 1.40940 1.21574 1.22393 0.98907 1.03239 0.87053 1.22011 0.92806 1.00511 0.99228 1.21836 1.02392 1.04040 0.95662 1.24432 0.85138 1.01387 0.98689 1.84206 1.36325 1.59025 1.26296 0.96232 0.89812 0.95357 0.92748 0.78581 0.90250 0.90142 0.91292 0.91604 0.91335 0.90667 0.87728 0.91276 0.82223 0.82853 0.77741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.26 37.16 0.34 -3.60 16 2 C 0.27 7.43 2.56 -69.08 -0.18 7.25 16 3 H 0.04 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.78 8.73 -34.44 -0.30 -15.08 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -26.02 11.32 55.43 0.63 -25.39 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.71 -16.01 5.07 -54.93 -0.28 -16.29 16 13 C 0.51 11.04 4.77 -10.99 -0.05 10.99 16 14 O -0.52 -13.43 13.56 -20.03 -0.27 -13.70 16 15 C 0.13 2.01 3.31 -68.75 -0.23 1.78 16 16 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 17 C -0.12 -1.61 5.33 -26.61 -0.14 -1.75 16 18 C -0.12 -1.10 5.88 -26.69 -0.16 -1.26 16 19 C -0.13 -1.22 6.08 -26.61 -0.16 -1.38 16 20 C 0.10 1.05 6.13 -3.71 -0.02 1.03 16 21 N -0.60 -8.95 2.97 -168.07 -0.50 -9.45 16 22 C 0.58 10.36 7.50 -12.86 -0.10 10.26 16 23 O -0.45 -10.20 11.10 -20.39 -0.23 -10.43 16 24 C -0.06 -0.95 6.78 -36.80 -0.25 -1.19 16 25 C -0.13 -1.72 10.63 -39.39 -0.42 -2.14 16 26 C -0.22 -2.21 10.87 -39.89 -0.43 -2.64 16 27 C -0.03 -0.24 12.08 29.62 0.36 0.12 16 28 O -0.16 -1.83 7.22 4.99 0.04 -1.79 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 2.45 6.07 -51.93 -0.32 2.14 16 31 H 0.03 0.77 7.26 -51.93 -0.38 0.40 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.38 7.52 8.38 -40.82 -0.34 7.18 16 34 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.11 1.07 4.18 -53.37 -0.22 0.85 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.16 2.28 8.06 -52.49 -0.42 1.85 16 43 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -35.74 353.91 -8.38 -44.12 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.25 Total: 7.16 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.83 Total: 4.12 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.15 Total: -51.13 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.46 Total: -25.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.74 -8.38 -44.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299669103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.640 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds