Wall clock time and date at job start Tue Mar 31 2020 12:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.30348 * 2 1 4 4 C 1.52913 * 109.30494 * 240.63774 * 2 1 3 5 5 C 1.53339 * 108.68608 * 188.95513 * 4 2 1 6 6 H 1.08998 * 109.70777 * 307.77020 * 5 4 2 7 7 C 1.50704 * 109.67567 * 187.25248 * 5 4 2 8 8 O 1.21273 * 119.99781 * 325.62321 * 7 5 4 9 9 N 1.34777 * 119.99995 * 145.62229 * 7 5 4 10 10 C 1.46503 * 120.00100 * 4.32206 * 9 7 5 11 11 C 1.50697 * 109.47015 * 85.25776 * 10 9 7 12 12 H 1.07992 * 120.00432 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99768 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99955 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99926 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47340 * 89.99949 * 15 13 11 17 17 H 1.48494 * 109.47067 * 329.99801 * 15 13 11 18 18 H 1.48504 * 109.46779 * 209.99674 * 15 13 11 19 19 C 1.46491 * 119.99874 * 184.31876 * 9 7 5 20 20 C 1.50705 * 109.47337 * 265.61334 * 19 9 7 21 21 C 1.34514 * 125.78370 * 89.99913 * 20 19 9 22 22 C 1.41390 * 106.83875 * 180.02562 * 21 20 19 23 23 C 1.34513 * 106.83655 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.78992 * 269.69324 * 20 19 9 25 25 C 1.53075 * 108.42458 * 67.52017 * 5 4 2 26 26 C 1.50178 * 109.88815 * 311.09934 * 25 5 4 27 27 O 1.21286 * 118.24262 * 197.55795 * 26 25 5 28 28 N 1.33352 * 123.50963 * 17.58384 * 26 25 5 29 29 H 1.09004 * 109.47024 * 300.41613 * 1 2 3 30 30 H 1.09003 * 109.47217 * 60.41063 * 1 2 3 31 31 H 1.08997 * 109.47728 * 180.40992 * 1 2 3 32 32 H 1.09004 * 109.60720 * 69.18806 * 4 2 1 33 33 H 1.08997 * 109.58710 * 308.70905 * 4 2 1 34 34 H 1.09007 * 109.47027 * 325.26223 * 10 9 7 35 35 H 1.08992 * 109.46932 * 205.26161 * 10 9 7 36 36 H 0.96997 * 120.00264 * 0.02562 * 14 13 11 37 37 H 1.09000 * 109.47442 * 25.61460 * 19 9 7 38 38 H 1.09003 * 109.47195 * 145.61890 * 19 9 7 39 39 H 1.07994 * 126.58462 * 359.96942 * 21 20 19 40 40 H 1.07997 * 126.58237 * 179.97438 * 22 21 20 41 41 H 1.08004 * 125.79000 * 180.02562 * 23 22 21 42 42 H 1.08993 * 109.39800 * 71.22704 * 25 5 4 43 43 H 1.09000 * 109.40364 * 191.05694 * 25 5 4 44 44 H 0.97002 * 117.94233 * 177.77891 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0355 -0.7076 -1.2578 5 6 3.5521 -0.8994 -1.1376 6 1 4.0257 0.0538 -0.9028 7 6 4.1007 -1.4323 -2.4361 8 8 3.4384 -2.1958 -3.1063 9 7 5.3273 -1.0602 -2.8527 10 6 6.1653 -0.2141 -1.9994 11 6 6.9227 -1.0779 -1.0242 12 1 6.7932 -2.1499 -1.0387 13 6 7.7810 -0.4995 -0.1133 14 7 7.9392 0.8060 -0.0959 15 14 8.7204 -1.5703 1.0952 16 1 10.0203 -1.9681 0.4975 17 1 7.9243 -2.7856 1.4023 18 1 8.9635 -0.8084 2.3464 19 6 5.8226 -1.5021 -4.1586 20 6 6.6404 -2.7563 -3.9877 21 6 6.1690 -4.0152 -4.0347 22 6 7.2725 -4.8739 -3.8251 23 6 8.3521 -4.0883 -3.6620 24 8 7.9644 -2.8067 -3.7683 25 6 3.8254 -1.9013 -0.0130 26 6 3.0496 -1.5164 1.2139 27 8 3.3848 -1.9927 2.2778 28 7 2.0117 -0.6793 1.1961 29 1 -0.3633 0.5203 0.8863 30 1 -0.3634 0.5075 -0.8937 31 1 -0.3634 -1.0276 0.0074 32 1 1.8121 -0.0995 -2.1344 33 1 1.5502 -1.6792 -1.3504 34 1 5.5351 0.4862 -1.4511 35 1 6.8710 0.3400 -2.6183 36 1 7.4517 1.3620 -0.7236 37 1 4.9785 -1.7058 -4.8175 38 1 6.4438 -0.7200 -4.5952 39 1 5.1441 -4.3130 -4.1998 40 1 7.2524 -5.9534 -3.7999 41 1 9.3607 -4.4301 -3.4823 42 1 3.5232 -2.8979 -0.3346 43 1 4.8904 -1.9033 0.2194 44 1 1.5481 -0.5122 2.0317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330751778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:09 Heat of formation + Delta-G solvation = -64.545446 kcal Electronic energy + Delta-G solvation = -28502.419192 eV Core-core repulsion = 24614.130088 eV Total energy + Delta-G solvation = -3888.289105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01593 -40.46571 -39.00642 -36.58235 -35.40757 -33.40103 -32.77199 -32.39650 -30.98526 -30.19075 -27.12157 -26.92730 -25.93208 -23.58987 -22.95681 -22.17082 -21.20728 -20.18580 -19.17751 -18.58224 -17.22153 -17.04510 -16.96872 -16.53779 -16.01661 -15.59904 -15.19196 -14.78411 -14.65898 -14.35309 -13.82445 -13.72952 -13.56404 -13.06034 -13.00343 -12.81712 -12.67595 -12.36990 -12.28490 -12.24136 -12.18627 -11.81781 -11.46593 -11.41232 -11.28052 -11.02542 -10.81920 -10.63018 -10.43252 -10.15198 -9.79054 -9.43107 -9.34436 -9.12435 -8.94593 -8.49917 -8.10571 -7.83704 -6.51208 -4.26358 2.17469 2.91442 3.00568 3.11173 3.39429 3.44477 3.46304 3.58327 3.60021 3.74820 4.44294 4.63775 4.71093 4.80476 5.07254 5.14275 5.20249 5.20831 5.24336 5.33338 5.40923 5.48458 5.54498 5.62493 5.69384 5.70995 5.83938 5.89147 5.94687 6.03043 6.23292 6.26774 6.37531 6.42110 6.48194 6.56106 6.74358 6.96475 6.97128 7.16681 7.53452 7.66614 7.81062 7.95882 8.34329 8.48042 8.64566 8.70908 9.42297 10.85436 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.005888 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.115397 B = 4754.287169 C = 6158.244396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.138 3.862 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.103 4.103 6 H 0.105 0.895 7 C 0.530 3.470 8 O -0.563 6.563 9 N -0.587 5.587 10 C 0.226 3.774 11 C -0.606 4.606 12 H 0.057 0.943 13 C 0.030 3.970 14 N -0.904 5.904 15 Si 1.061 2.939 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.283 1.283 19 C 0.198 3.802 20 C -0.008 4.008 21 C -0.203 4.203 22 C -0.223 4.223 23 C -0.041 4.041 24 O -0.157 6.157 25 C -0.124 4.124 26 C 0.530 3.470 27 O -0.557 6.557 28 N -0.720 5.720 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.028 0.972 36 H 0.267 0.733 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.195 0.805 42 H 0.096 0.904 43 H 0.131 0.869 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.560 -1.593 -5.860 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.124 4.124 6 H 0.123 0.877 7 C 0.319 3.681 8 O -0.443 6.443 9 N -0.316 5.316 10 C 0.106 3.894 11 C -0.645 4.645 12 H 0.075 0.925 13 C -0.175 4.175 14 N -0.539 5.539 15 Si 0.889 3.111 16 H -0.214 1.214 17 H -0.210 1.210 18 H -0.208 1.208 19 C 0.075 3.925 20 C -0.060 4.060 21 C -0.223 4.223 22 C -0.242 4.242 23 C -0.110 4.110 24 O -0.051 6.051 25 C -0.164 4.164 26 C 0.318 3.682 27 O -0.435 6.435 28 N -0.373 5.373 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.212 0.788 42 H 0.114 0.886 43 H 0.149 0.851 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -8.302 -1.936 -4.612 9.693 hybrid contribution -1.094 -0.250 -0.870 1.420 sum -9.397 -2.187 -5.483 11.097 Atomic orbital electron populations 1.22147 0.94271 1.02888 1.02671 1.20951 0.94353 0.96350 0.85102 0.90679 1.21817 0.94308 1.02282 0.96722 1.21330 0.95968 1.01599 0.93515 0.87723 1.20248 0.81073 0.80363 0.86458 1.90599 1.60032 1.36209 1.57506 1.48180 1.15414 1.50057 1.17983 1.19637 0.89756 0.90242 0.89787 1.22196 1.28498 0.94890 1.18881 0.92513 1.25670 0.95984 0.97493 0.98381 1.70824 1.41390 1.04286 1.37425 0.83630 0.76129 0.75100 0.76244 1.21366 1.21036 1.20821 1.19680 0.95639 0.90811 0.86418 1.22802 0.81510 0.97372 1.04288 1.21540 1.00017 0.92013 1.08736 1.21719 0.92941 1.00264 1.09303 1.23912 1.00147 0.80921 1.06027 1.84096 1.23867 1.28585 1.68577 1.21670 1.04287 0.99431 0.91015 1.20181 0.79456 0.77539 0.91053 1.90737 1.67211 1.53982 1.31544 1.45631 1.32862 1.47033 1.11754 0.92087 0.90918 0.91847 0.89853 0.90048 0.95201 0.95396 0.92249 0.87666 0.89551 0.83940 0.84200 0.78812 0.88562 0.85084 0.77036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.40 37.16 0.35 -0.98 16 2 C 0.14 1.52 3.67 -68.38 -0.25 1.27 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -1.47 4.14 -26.60 -0.11 -1.58 16 5 C -0.10 -1.72 2.07 -91.56 -0.19 -1.91 16 6 H 0.10 1.83 5.79 -51.93 -0.30 1.52 16 7 C 0.53 9.93 6.62 -10.98 -0.07 9.86 16 8 O -0.56 -11.19 15.98 5.56 0.09 -11.10 16 9 N -0.59 -11.35 2.45 -176.44 -0.43 -11.78 16 10 C 0.23 4.94 4.32 -5.19 -0.02 4.92 16 11 C -0.61 -15.23 7.77 -34.44 -0.27 -15.50 16 12 H 0.06 1.52 7.72 -52.49 -0.41 1.12 16 13 C 0.03 0.81 5.46 -17.82 -0.10 0.71 16 14 N -0.90 -25.16 13.65 55.43 0.76 -24.41 16 15 Si 1.06 25.02 29.90 -169.99 -5.08 19.93 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.20 3.46 5.99 -5.20 -0.03 3.43 16 20 C -0.01 -0.14 6.90 -35.62 -0.25 -0.39 16 21 C -0.20 -3.65 10.81 -39.70 -0.43 -4.08 16 22 C -0.22 -3.64 10.91 -39.70 -0.43 -4.07 16 23 C -0.04 -0.68 12.09 29.42 0.36 -0.33 16 24 O -0.16 -3.08 10.65 5.71 0.06 -3.02 16 25 C -0.12 -2.29 5.34 -28.10 -0.15 -2.44 16 26 C 0.53 9.53 7.71 -11.87 -0.09 9.44 16 27 O -0.56 -12.13 17.78 5.55 0.10 -12.03 16 28 N -0.72 -9.82 5.12 -54.86 -0.28 -10.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 34 H 0.03 0.66 5.73 -51.92 -0.30 0.36 16 35 H 0.03 0.64 7.75 -51.93 -0.40 0.24 16 36 H 0.27 7.23 7.22 -40.82 -0.29 6.93 16 37 H 0.11 1.67 7.35 -51.93 -0.38 1.29 16 38 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 39 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 40 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.20 2.44 8.06 -52.48 -0.42 2.02 16 42 H 0.10 1.75 8.09 -51.93 -0.42 1.33 16 43 H 0.13 2.86 6.37 -51.93 -0.33 2.53 16 44 H 0.39 4.77 8.66 -40.82 -0.35 4.41 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -32.08 365.62 -7.16 -39.24 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.20 Total: 9.41 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.69 Total: -1.65 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.04 Total: -46.29 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.25 Total: -26.16 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.08 -7.16 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330751778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.305 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds