Wall clock time and date at job start Tue Mar 31 2020 12:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.30348 * 2 1 4 4 C 1.52913 * 109.30494 * 240.63774 * 2 1 3 5 5 C 1.53339 * 108.68608 * 188.95513 * 4 2 1 6 6 H 1.08998 * 109.70777 * 307.77020 * 5 4 2 7 7 C 1.50704 * 109.67567 * 187.25248 * 5 4 2 8 8 O 1.21273 * 119.99781 * 325.62321 * 7 5 4 9 9 N 1.34777 * 119.99995 * 145.62229 * 7 5 4 10 10 C 1.46503 * 120.00100 * 4.32206 * 9 7 5 11 11 C 1.50697 * 109.47015 * 85.25776 * 10 9 7 12 12 H 1.07992 * 120.00432 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99768 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99955 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99926 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47340 * 89.99949 * 15 13 11 17 17 H 1.48494 * 109.47067 * 329.99801 * 15 13 11 18 18 H 1.48504 * 109.46779 * 209.99674 * 15 13 11 19 19 C 1.46491 * 119.99874 * 184.31876 * 9 7 5 20 20 C 1.50705 * 109.47337 * 265.61334 * 19 9 7 21 21 C 1.34514 * 125.78370 * 89.99913 * 20 19 9 22 22 C 1.41390 * 106.83875 * 180.02562 * 21 20 19 23 23 C 1.34513 * 106.83655 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.78992 * 269.69324 * 20 19 9 25 25 C 1.53075 * 108.42458 * 67.52017 * 5 4 2 26 26 C 1.50178 * 109.88815 * 311.09934 * 25 5 4 27 27 O 1.21286 * 118.24262 * 197.55795 * 26 25 5 28 28 N 1.33352 * 123.50963 * 17.58384 * 26 25 5 29 29 H 1.09004 * 109.47024 * 300.41613 * 1 2 3 30 30 H 1.09003 * 109.47217 * 60.41063 * 1 2 3 31 31 H 1.08997 * 109.47728 * 180.40992 * 1 2 3 32 32 H 1.09004 * 109.60720 * 69.18806 * 4 2 1 33 33 H 1.08997 * 109.58710 * 308.70905 * 4 2 1 34 34 H 1.09007 * 109.47027 * 325.26223 * 10 9 7 35 35 H 1.08992 * 109.46932 * 205.26161 * 10 9 7 36 36 H 0.96997 * 120.00264 * 0.02562 * 14 13 11 37 37 H 1.09000 * 109.47442 * 25.61460 * 19 9 7 38 38 H 1.09003 * 109.47195 * 145.61890 * 19 9 7 39 39 H 1.07994 * 126.58462 * 359.96942 * 21 20 19 40 40 H 1.07997 * 126.58237 * 179.97438 * 22 21 20 41 41 H 1.08004 * 125.79000 * 180.02562 * 23 22 21 42 42 H 1.08993 * 109.39800 * 71.22704 * 25 5 4 43 43 H 1.09000 * 109.40364 * 191.05694 * 25 5 4 44 44 H 0.97002 * 117.94233 * 177.77891 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0355 -0.7076 -1.2578 5 6 3.5521 -0.8994 -1.1376 6 1 4.0257 0.0538 -0.9028 7 6 4.1007 -1.4323 -2.4361 8 8 3.4384 -2.1958 -3.1063 9 7 5.3273 -1.0602 -2.8527 10 6 6.1653 -0.2141 -1.9994 11 6 6.9227 -1.0779 -1.0242 12 1 6.7932 -2.1499 -1.0387 13 6 7.7810 -0.4995 -0.1133 14 7 7.9392 0.8060 -0.0959 15 14 8.7204 -1.5703 1.0952 16 1 10.0203 -1.9681 0.4975 17 1 7.9243 -2.7856 1.4023 18 1 8.9635 -0.8084 2.3464 19 6 5.8226 -1.5021 -4.1586 20 6 6.6404 -2.7563 -3.9877 21 6 6.1690 -4.0152 -4.0347 22 6 7.2725 -4.8739 -3.8251 23 6 8.3521 -4.0883 -3.6620 24 8 7.9644 -2.8067 -3.7683 25 6 3.8254 -1.9013 -0.0130 26 6 3.0496 -1.5164 1.2139 27 8 3.3848 -1.9927 2.2778 28 7 2.0117 -0.6793 1.1961 29 1 -0.3633 0.5203 0.8863 30 1 -0.3634 0.5075 -0.8937 31 1 -0.3634 -1.0276 0.0074 32 1 1.8121 -0.0995 -2.1344 33 1 1.5502 -1.6792 -1.3504 34 1 5.5351 0.4862 -1.4511 35 1 6.8710 0.3400 -2.6183 36 1 7.4517 1.3620 -0.7236 37 1 4.9785 -1.7058 -4.8175 38 1 6.4438 -0.7200 -4.5952 39 1 5.1441 -4.3130 -4.1998 40 1 7.2524 -5.9534 -3.7999 41 1 9.3607 -4.4301 -3.4823 42 1 3.5232 -2.8979 -0.3346 43 1 4.8904 -1.9033 0.2194 44 1 1.5481 -0.5122 2.0317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330751778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:08 Heat of formation + Delta-G solvation = -85.164030 kcal Electronic energy + Delta-G solvation = -28503.313281 eV Core-core repulsion = 24614.130088 eV Total energy + Delta-G solvation = -3889.183194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39779 -41.84615 -40.49650 -37.87832 -37.04745 -35.00598 -34.39398 -33.79815 -32.10417 -31.63002 -28.75993 -28.22905 -27.30734 -25.22304 -24.55109 -23.28824 -22.57226 -21.56825 -20.49745 -20.11902 -18.99319 -18.41530 -18.31059 -18.02207 -17.33185 -17.11728 -16.57515 -16.21046 -16.14434 -15.69896 -15.58784 -15.09138 -15.05156 -14.57207 -14.46106 -14.21767 -13.86376 -13.69580 -13.67088 -13.54099 -13.49614 -13.11237 -13.00491 -12.67073 -12.60892 -12.52448 -12.41774 -12.06766 -11.91424 -11.85399 -11.32029 -11.22231 -10.80440 -10.64345 -10.49499 -10.13607 -9.70672 -9.31526 -8.59482 -6.33755 0.78412 1.44801 1.48003 1.55282 1.57953 1.71000 1.71531 2.23965 2.26747 2.28656 2.51164 3.16037 3.35135 3.58037 3.68129 3.73733 3.84322 3.96636 4.11845 4.15512 4.18275 4.31639 4.34602 4.41325 4.47648 4.55598 4.66424 4.72773 4.85906 4.92897 4.95299 4.97858 5.02752 5.03761 5.17778 5.24248 5.35130 5.51668 5.65395 5.83420 5.84713 6.12773 6.24424 6.29836 6.49352 6.61218 7.13763 7.14870 7.38328 8.77727 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.005888 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.115397 B = 4754.287169 C = 6158.244396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.091 0.909 4 C -0.106 4.106 5 C -0.098 4.098 6 H 0.097 0.903 7 C 0.529 3.471 8 O -0.572 6.572 9 N -0.589 5.589 10 C 0.238 3.762 11 C -0.591 4.591 12 H 0.036 0.964 13 C -0.009 4.009 14 N -0.929 5.929 15 Si 1.089 2.911 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.194 3.806 20 C -0.032 4.032 21 C -0.211 4.211 22 C -0.227 4.227 23 C -0.047 4.047 24 O -0.184 6.184 25 C -0.119 4.119 26 C 0.529 3.471 27 O -0.603 6.603 28 N -0.702 5.702 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.020 0.980 36 H 0.264 0.736 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.230 0.770 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 -1.514 -6.430 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.031 3.969 3 H 0.109 0.891 4 C -0.145 4.145 5 C -0.119 4.119 6 H 0.115 0.885 7 C 0.318 3.682 8 O -0.453 6.453 9 N -0.319 5.319 10 C 0.117 3.883 11 C -0.630 4.630 12 H 0.054 0.946 13 C -0.210 4.210 14 N -0.567 5.567 15 Si 0.914 3.086 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.211 1.211 19 C 0.071 3.929 20 C -0.083 4.083 21 C -0.231 4.231 22 C -0.246 4.246 23 C -0.114 4.114 24 O -0.079 6.079 25 C -0.159 4.159 26 C 0.317 3.683 27 O -0.485 6.485 28 N -0.353 5.353 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.162 0.838 40 H 0.186 0.814 41 H 0.246 0.754 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.735 -1.839 -5.222 11.200 hybrid contribution -0.703 -0.334 -0.772 1.096 sum -10.438 -2.173 -5.994 12.231 Atomic orbital electron populations 1.22110 0.91265 1.03306 1.04517 1.21230 0.96583 0.96214 0.82874 0.89135 1.21845 0.91061 1.02869 0.98676 1.21323 0.98734 1.00221 0.91656 0.88514 1.20570 0.80742 0.80013 0.86887 1.90588 1.60159 1.36563 1.58006 1.48146 1.15371 1.49942 1.18427 1.19317 0.89652 0.89964 0.89354 1.22243 1.27859 0.94033 1.18817 0.94588 1.26477 0.96988 0.97809 0.99734 1.70890 1.42683 1.04782 1.38317 0.83251 0.76124 0.74112 0.75137 1.19725 1.21181 1.21062 1.19889 0.96334 0.90987 0.85705 1.23035 0.81638 0.98103 1.05535 1.21746 1.00590 0.92324 1.08469 1.22082 0.92184 1.01645 1.08726 1.24713 1.01889 0.79906 1.04918 1.84073 1.24296 1.30323 1.69230 1.21467 1.02127 1.00105 0.92197 1.20039 0.80260 0.78068 0.89957 1.90711 1.68859 1.56167 1.32773 1.45567 1.31134 1.45179 1.13447 0.90444 0.88913 0.92165 0.87796 0.90392 0.94853 0.96161 0.92652 0.86169 0.88361 0.83843 0.81416 0.75360 0.88820 0.88891 0.75721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.40 71.98 0.68 -1.27 16 2 C 0.13 2.60 3.67 45.10 0.17 2.77 16 3 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.11 -2.53 4.14 30.68 0.13 -2.40 16 5 C -0.10 -3.22 2.07 -11.40 -0.02 -3.24 16 6 H 0.10 3.34 5.79 -2.39 -0.01 3.32 16 7 C 0.53 19.55 6.62 87.66 0.58 20.13 16 8 O -0.57 -22.21 15.98 -3.01 -0.05 -22.26 16 9 N -0.59 -22.74 2.45 -830.51 -2.04 -24.78 16 10 C 0.24 10.53 4.32 85.63 0.37 10.90 16 11 C -0.59 -30.17 7.77 25.60 0.20 -29.97 16 12 H 0.04 1.97 7.72 -2.91 -0.02 1.95 16 13 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 14 N -0.93 -52.25 13.65 21.45 0.29 -51.96 16 15 Si 1.09 50.91 29.90 68.60 2.05 52.96 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 C 0.19 6.69 5.99 85.64 0.51 7.21 16 20 C -0.03 -1.19 6.90 24.83 0.17 -1.02 16 21 C -0.21 -7.49 10.81 22.19 0.24 -7.25 16 22 C -0.23 -7.10 10.91 22.19 0.24 -6.86 16 23 C -0.05 -1.48 12.09 66.97 0.81 -0.67 16 24 O -0.18 -7.18 10.65 -2.50 -0.03 -7.21 16 25 C -0.12 -4.47 5.34 29.71 0.16 -4.31 16 26 C 0.53 19.08 7.71 87.71 0.68 19.76 16 27 O -0.60 -26.80 17.78 -3.05 -0.05 -26.85 16 28 N -0.70 -18.03 5.12 -446.67 -2.29 -20.32 16 29 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 1.95 8.06 -2.39 -0.02 1.93 16 34 H 0.03 1.48 5.73 -2.38 -0.01 1.47 16 35 H 0.02 0.94 7.75 -2.39 -0.02 0.92 16 36 H 0.26 14.45 7.22 -92.71 -0.67 13.78 16 37 H 0.12 3.73 7.35 -2.39 -0.02 3.71 16 38 H 0.10 3.09 7.93 -2.39 -0.02 3.07 16 39 H 0.14 4.96 8.06 -2.91 -0.02 4.93 16 40 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.23 5.23 8.06 -2.91 -0.02 5.21 16 42 H 0.09 3.50 8.09 -2.39 -0.02 3.48 16 43 H 0.09 4.24 6.37 -2.39 -0.02 4.23 16 44 H 0.41 9.01 8.66 -92.71 -0.80 8.21 16 Total: -1.00 -70.33 365.62 3.58 -66.75 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.32 Total: 29.91 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.37 Total: 3.75 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -4.03 Total: -97.05 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -0.13 Total: -56.32 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -70.33 3.58 -66.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330751778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.416 kcal (2) G-P(sol) polarization free energy of solvation -70.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds