Wall clock time and date at job start Tue Mar 31 2020 13:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34715 * 117.00032 * 2 1 4 4 O 1.21470 * 119.99577 * 359.97438 * 3 2 1 5 5 C 1.47743 * 119.99768 * 179.97438 * 3 2 1 6 6 C 1.39662 * 120.11887 * 359.96871 * 5 3 2 7 7 C 1.37968 * 119.98927 * 180.02562 * 6 5 3 8 8 C 1.38258 * 120.22777 * 0.02562 * 7 6 5 9 9 C 1.38951 * 120.23604 * 359.97438 * 8 7 6 10 10 N 1.39961 * 119.99710 * 180.28309 * 9 8 7 11 11 C 1.34778 * 119.99607 * 324.62480 * 10 9 8 12 12 O 1.21280 * 120.00176 * 4.63068 * 11 10 9 13 13 C 1.50703 * 119.99771 * 184.62434 * 11 10 9 14 14 C 1.53001 * 109.47199 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.46386 * 55.00065 * 14 13 11 16 16 C 1.52994 * 109.47109 * 175.00077 * 14 13 11 17 17 N 1.46898 * 109.47200 * 295.00203 * 14 13 11 18 18 C 1.46900 * 110.99958 * 154.99520 * 17 14 13 19 19 C 1.50703 * 109.46950 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00143 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99730 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99912 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99735 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47042 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.46698 * 119.99892 * 23 21 19 26 26 H 1.48498 * 109.47207 * 239.99751 * 23 21 19 27 27 C 1.38628 * 120.00574 * 359.97438 * 9 8 7 28 28 H 1.09001 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47773 * 300.00501 * 1 2 3 30 30 H 1.09004 * 109.47329 * 60.00516 * 1 2 3 31 31 H 1.07993 * 120.00396 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.88140 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.88258 * 180.02562 * 8 7 6 34 34 H 0.96999 * 119.99993 * 144.63366 * 10 9 8 35 35 H 1.09004 * 109.47167 * 300.00661 * 13 11 10 36 36 H 1.09001 * 109.46994 * 60.00614 * 13 11 10 37 37 H 1.09005 * 109.46882 * 180.02562 * 16 14 13 38 38 H 1.09004 * 109.47152 * 299.99707 * 16 14 13 39 39 H 1.09000 * 109.47652 * 60.00360 * 16 14 13 40 40 H 1.00900 * 110.99745 * 31.04827 * 17 14 13 41 41 H 1.08998 * 109.47284 * 299.99815 * 18 17 14 42 42 H 1.08995 * 109.46998 * 60.00408 * 18 17 14 43 43 H 0.96999 * 119.99567 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.11124 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3020 0.1078 0.0018 7 6 5.6796 0.1831 0.0028 8 6 6.3095 1.4139 0.0033 9 6 5.5595 2.5836 0.0021 10 7 6.2023 3.8269 -0.0035 11 6 7.3592 3.9903 0.6683 12 8 7.8868 3.0406 1.2075 13 6 7.9974 5.3531 0.7495 14 6 9.2908 5.2631 1.5618 15 1 9.9409 4.5039 1.1268 16 6 10.0022 6.6174 1.5397 17 7 8.9734 4.8994 2.9492 18 6 10.1157 4.2388 3.5948 19 6 9.7535 3.8819 5.0135 20 1 8.7727 4.1214 5.3970 21 6 10.6743 3.2495 5.8217 22 7 11.8685 2.9574 5.3545 23 14 10.2256 2.8078 7.5805 24 1 8.8332 3.2415 7.8599 25 1 10.3332 1.3381 7.7644 26 1 11.1541 3.4929 8.5152 27 6 4.1748 2.5194 -0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.8137 -0.8554 0.0019 32 1 6.2680 -0.7226 0.0033 33 1 7.3882 1.4663 0.0037 34 1 5.8151 4.5709 -0.4907 35 1 8.2240 5.7087 -0.2557 36 1 7.3111 6.0474 1.2344 37 1 10.9239 6.5531 2.1181 38 1 10.2379 6.8872 0.5102 39 1 9.3522 7.3765 1.9747 40 1 8.1491 4.3190 2.9913 41 1 10.3694 3.3324 3.0452 42 1 10.9716 4.9137 3.5976 43 1 12.5161 2.5123 5.9231 44 1 3.5902 3.4275 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425988872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:31 Heat of formation + Delta-G solvation = -93.985530 kcal Electronic energy + Delta-G solvation = -26088.681803 eV Core-core repulsion = 22199.116080 eV Total energy + Delta-G solvation = -3889.565723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00387 -40.40549 -38.63177 -36.71482 -36.12700 -34.83615 -32.87904 -31.60441 -30.89885 -29.90017 -28.12940 -27.46873 -25.91614 -24.48881 -22.93140 -22.02346 -21.50660 -20.45057 -19.71180 -18.58847 -17.42250 -17.25711 -16.65001 -16.53419 -16.24820 -15.96176 -15.66421 -14.88272 -14.66080 -14.45794 -14.35231 -13.92711 -13.85409 -13.78649 -13.42321 -12.85811 -12.50529 -12.44154 -12.26183 -12.15577 -11.84304 -11.65888 -11.56544 -11.40549 -11.19855 -11.14007 -10.89143 -10.83267 -10.53775 -10.52073 -10.27126 -9.82003 -9.69719 -9.24447 -9.02264 -8.41071 -8.38207 -7.16911 -5.93025 -3.93218 0.46922 1.03381 2.25165 2.30348 2.61456 2.94095 3.37153 3.43668 3.49623 3.57744 4.38297 4.51336 4.55612 4.71564 4.75773 4.84302 4.87354 4.96937 5.03818 5.09216 5.13973 5.21832 5.31749 5.43243 5.56903 5.60073 5.66238 5.91632 5.95933 5.97205 6.03740 6.10112 6.14279 6.26539 6.34321 6.56062 6.71425 6.75780 7.21024 7.40408 7.42618 7.63423 7.89470 8.06558 8.25724 8.53319 8.75626 9.16002 9.70464 11.18445 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.002821 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.223156 B = 9922.561696 C =11266.847478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.513 3.487 4 O -0.507 6.507 5 C -0.114 4.114 6 C -0.079 4.079 7 C -0.113 4.113 8 C -0.081 4.081 9 C 0.141 3.859 10 N -0.680 5.680 11 C 0.509 3.491 12 O -0.499 6.499 13 C -0.140 4.140 14 C 0.093 3.907 15 H 0.043 0.957 16 C -0.136 4.136 17 N -0.682 5.682 18 C 0.198 3.802 19 C -0.507 4.507 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.899 5.899 23 Si 0.896 3.104 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.083 4.083 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.411 0.589 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.332 0.668 41 H -0.010 1.010 42 H 0.025 0.975 43 H 0.259 0.741 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.467 -2.560 -17.652 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.358 3.642 4 O -0.396 6.396 5 C -0.116 4.116 6 C -0.098 4.098 7 C -0.131 4.131 8 C -0.101 4.101 9 C 0.047 3.953 10 N -0.326 5.326 11 C 0.297 3.703 12 O -0.371 6.371 13 C -0.180 4.180 14 C -0.018 4.018 15 H 0.061 0.939 16 C -0.194 4.194 17 N -0.315 5.315 18 C 0.072 3.928 19 C -0.545 4.545 20 H 0.078 0.922 21 C -0.147 4.147 22 N -0.539 5.539 23 Si 0.724 3.276 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.104 4.104 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.247 0.753 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.150 0.850 41 H 0.008 0.992 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.932 -2.356 -16.918 24.765 hybrid contribution -0.619 -0.734 0.362 1.026 sum -18.550 -3.090 -16.556 25.055 Atomic orbital electron populations 1.23296 0.75854 1.03847 1.02705 1.86544 1.23631 1.32570 1.84303 1.21192 0.89086 0.81424 0.72508 1.90832 1.66826 1.36047 1.45935 1.18728 0.88734 0.94453 1.09681 1.21424 0.93955 0.97770 0.96615 1.21117 0.94091 0.97996 0.99908 1.21704 1.02043 0.90848 0.95554 1.17561 0.90574 0.86099 1.01099 1.43663 1.24933 1.11395 1.52641 1.21259 0.79793 0.92306 0.76943 1.90810 1.61014 1.41882 1.43402 1.21995 0.99784 0.93277 1.02932 1.21240 0.92532 0.97184 0.90833 0.93861 1.21763 1.01167 0.96535 0.99914 1.60903 1.08977 1.49759 1.11859 1.19514 0.88250 0.91823 0.93258 1.21225 0.99661 1.36881 0.96772 0.92234 1.24972 0.95020 0.96015 0.98659 1.69979 1.05277 1.42348 1.36316 0.86468 0.78481 0.77913 0.84698 1.19740 1.21148 1.21086 1.20923 0.92618 0.97518 0.99342 0.87882 0.91717 0.91796 0.84414 0.84556 0.83379 0.75264 0.88559 0.87805 0.91959 0.93673 0.92395 0.85023 0.99248 0.95712 0.93140 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.44 9.81 -40.53 -0.40 -3.83 16 3 C 0.51 5.95 7.90 34.62 0.27 6.22 16 4 O -0.51 -6.94 16.13 -19.24 -0.31 -7.25 16 5 C -0.11 -1.28 5.87 -105.01 -0.62 -1.90 16 6 C -0.08 -0.79 9.61 -39.15 -0.38 -1.17 16 7 C -0.11 -1.19 10.02 -39.67 -0.40 -1.59 16 8 C -0.08 -1.03 8.70 -39.31 -0.34 -1.37 16 9 C 0.14 1.68 6.29 -83.74 -0.53 1.16 16 10 N -0.68 -7.21 5.33 -9.89 -0.05 -7.26 16 11 C 0.51 7.08 7.14 -10.98 -0.08 7.01 16 12 O -0.50 -9.31 12.02 5.56 0.07 -9.24 16 13 C -0.14 -1.71 5.30 -27.88 -0.15 -1.86 16 14 C 0.09 1.63 2.21 -67.72 -0.15 1.48 16 15 H 0.04 0.85 7.61 -51.92 -0.40 0.45 16 16 C -0.14 -2.09 9.41 37.15 0.35 -1.74 16 17 N -0.68 -15.20 6.17 -107.99 -0.67 -15.87 16 18 C 0.20 5.47 5.24 -4.97 -0.03 5.44 16 19 C -0.51 -15.11 9.32 -34.44 -0.32 -15.43 16 20 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 21 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -27.89 13.29 55.43 0.74 -27.15 16 23 Si 0.90 22.62 29.54 -169.99 -5.02 17.59 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 27 C -0.08 -0.93 9.51 -38.96 -0.37 -1.30 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.14 1.10 7.60 -52.49 -0.40 0.71 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.15 2.11 6.22 -52.49 -0.33 1.79 16 34 H 0.41 2.83 8.82 -40.82 -0.36 2.47 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.11 7.45 -51.93 -0.39 0.72 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.33 7.54 6.49 -39.29 -0.25 7.28 16 41 H -0.01 -0.31 8.06 -51.93 -0.42 -0.73 16 42 H 0.02 0.72 7.44 -51.93 -0.39 0.34 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.14 1.43 7.65 -52.49 -0.40 1.02 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -36.32 374.67 -8.01 -44.33 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.26 Total: 5.27 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.76 Total: -2.24 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.02 Total: -50.28 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.64 Total: -20.32 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.32 -8.01 -44.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425988872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.656 kcal (2) G-P(sol) polarization free energy of solvation -36.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds