Wall clock time and date at job start Tue Mar 31 2020 13:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34715 * 117.00032 * 2 1 4 4 O 1.21470 * 119.99577 * 359.97438 * 3 2 1 5 5 C 1.47743 * 119.99768 * 179.97438 * 3 2 1 6 6 C 1.39662 * 120.11887 * 359.96871 * 5 3 2 7 7 C 1.37968 * 119.98927 * 180.02562 * 6 5 3 8 8 C 1.38258 * 120.22777 * 0.02562 * 7 6 5 9 9 C 1.38951 * 120.23604 * 359.97438 * 8 7 6 10 10 N 1.39961 * 119.99710 * 180.28309 * 9 8 7 11 11 C 1.34778 * 119.99607 * 324.62480 * 10 9 8 12 12 O 1.21280 * 120.00176 * 4.63068 * 11 10 9 13 13 C 1.50703 * 119.99771 * 184.62434 * 11 10 9 14 14 C 1.53001 * 109.47199 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.46386 * 55.00065 * 14 13 11 16 16 C 1.52994 * 109.47109 * 175.00077 * 14 13 11 17 17 N 1.46898 * 109.47200 * 295.00203 * 14 13 11 18 18 C 1.46900 * 110.99958 * 154.99520 * 17 14 13 19 19 C 1.50703 * 109.46950 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00143 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99730 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99912 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99735 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47042 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.46698 * 119.99892 * 23 21 19 26 26 H 1.48498 * 109.47207 * 239.99751 * 23 21 19 27 27 C 1.38628 * 120.00574 * 359.97438 * 9 8 7 28 28 H 1.09001 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47773 * 300.00501 * 1 2 3 30 30 H 1.09004 * 109.47329 * 60.00516 * 1 2 3 31 31 H 1.07993 * 120.00396 * 0.02562 * 6 5 3 32 32 H 1.08000 * 119.88140 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.88258 * 180.02562 * 8 7 6 34 34 H 0.96999 * 119.99993 * 144.63366 * 10 9 8 35 35 H 1.09004 * 109.47167 * 300.00661 * 13 11 10 36 36 H 1.09001 * 109.46994 * 60.00614 * 13 11 10 37 37 H 1.09005 * 109.46882 * 180.02562 * 16 14 13 38 38 H 1.09004 * 109.47152 * 299.99707 * 16 14 13 39 39 H 1.09000 * 109.47652 * 60.00360 * 16 14 13 40 40 H 1.00900 * 110.99745 * 31.04827 * 17 14 13 41 41 H 1.08998 * 109.47284 * 299.99815 * 18 17 14 42 42 H 1.08995 * 109.46998 * 60.00408 * 18 17 14 43 43 H 0.96999 * 119.99567 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.11124 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3020 0.1078 0.0018 7 6 5.6796 0.1831 0.0028 8 6 6.3095 1.4139 0.0033 9 6 5.5595 2.5836 0.0021 10 7 6.2023 3.8269 -0.0035 11 6 7.3592 3.9903 0.6683 12 8 7.8868 3.0406 1.2075 13 6 7.9974 5.3531 0.7495 14 6 9.2908 5.2631 1.5618 15 1 9.9409 4.5039 1.1268 16 6 10.0022 6.6174 1.5397 17 7 8.9734 4.8994 2.9492 18 6 10.1157 4.2388 3.5948 19 6 9.7535 3.8819 5.0135 20 1 8.7727 4.1214 5.3970 21 6 10.6743 3.2495 5.8217 22 7 11.8685 2.9574 5.3545 23 14 10.2256 2.8078 7.5805 24 1 8.8332 3.2415 7.8599 25 1 10.3332 1.3381 7.7644 26 1 11.1541 3.4929 8.5152 27 6 4.1748 2.5194 -0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.8137 -0.8554 0.0019 32 1 6.2680 -0.7226 0.0033 33 1 7.3882 1.4663 0.0037 34 1 5.8151 4.5709 -0.4907 35 1 8.2240 5.7087 -0.2557 36 1 7.3111 6.0474 1.2344 37 1 10.9239 6.5531 2.1181 38 1 10.2379 6.8872 0.5102 39 1 9.3522 7.3765 1.9747 40 1 8.1491 4.3190 2.9913 41 1 10.3694 3.3324 3.0452 42 1 10.9716 4.9137 3.5976 43 1 12.5161 2.5123 5.9231 44 1 3.5902 3.4275 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425988872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:30 Heat of formation + Delta-G solvation = -119.791174 kcal Electronic energy + Delta-G solvation = -26089.800819 eV Core-core repulsion = 22199.116080 eV Total energy + Delta-G solvation = -3890.684739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93235 -41.36775 -39.61935 -37.68996 -37.50309 -35.90093 -34.99361 -32.60286 -32.35515 -31.10121 -28.92489 -28.41775 -28.01053 -25.35147 -24.22485 -23.47290 -22.74364 -21.57134 -20.97356 -19.49499 -18.55037 -18.30497 -18.22924 -17.43299 -17.35529 -16.97980 -16.85976 -16.54400 -16.23084 -15.71186 -15.55571 -15.00454 -14.79182 -14.61719 -14.53949 -14.39642 -13.82506 -13.76136 -13.55733 -13.18069 -13.08891 -13.03287 -12.84302 -12.79112 -12.65905 -12.47883 -12.37075 -11.97566 -11.84628 -11.80214 -11.70673 -11.50601 -11.23087 -10.87498 -10.66476 -10.14586 -9.32543 -9.06967 -8.22470 -6.33086 -0.42571 0.15737 1.33068 1.37511 1.39113 1.50530 1.53040 1.63135 2.03548 2.39128 2.70185 3.10177 3.57756 3.59812 3.63427 3.81104 3.90305 4.05410 4.10090 4.29352 4.32779 4.33751 4.38824 4.41918 4.57950 4.68957 4.72243 4.76990 4.82936 4.95004 5.07182 5.13037 5.14361 5.22032 5.24852 5.27045 5.35538 5.38903 5.47212 5.62886 5.81172 6.05825 6.34394 6.48645 6.58744 6.75726 6.90539 7.11011 7.37046 8.89814 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.002821 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.223156 B = 9922.561696 C =11266.847478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.516 3.484 4 O -0.533 6.533 5 C -0.125 4.125 6 C -0.069 4.069 7 C -0.114 4.114 8 C -0.101 4.101 9 C 0.128 3.872 10 N -0.660 5.660 11 C 0.506 3.494 12 O -0.556 6.556 13 C -0.126 4.126 14 C 0.085 3.915 15 H 0.013 0.987 16 C -0.129 4.129 17 N -0.677 5.677 18 C 0.218 3.782 19 C -0.533 4.533 20 H 0.058 0.942 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.973 3.027 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.273 1.273 27 C -0.081 4.081 28 H 0.135 0.865 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.126 0.874 34 H 0.431 0.569 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.027 0.973 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.329 0.671 41 H -0.052 1.052 42 H 0.001 0.999 43 H 0.265 0.735 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.701 -2.254 -17.975 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.362 3.638 4 O -0.425 6.425 5 C -0.127 4.127 6 C -0.087 4.087 7 C -0.132 4.132 8 C -0.121 4.121 9 C 0.034 3.966 10 N -0.307 5.307 11 C 0.296 3.704 12 O -0.432 6.432 13 C -0.166 4.166 14 C -0.026 4.026 15 H 0.031 0.969 16 C -0.187 4.187 17 N -0.309 5.309 18 C 0.090 3.910 19 C -0.571 4.571 20 H 0.076 0.924 21 C -0.199 4.199 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.199 1.199 27 C -0.102 4.102 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.144 0.856 34 H 0.271 0.729 35 H 0.162 0.838 36 H 0.146 0.854 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.146 0.854 41 H -0.035 1.035 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.211 -2.020 -17.292 26.676 hybrid contribution 0.027 -0.884 0.365 0.957 sum -20.184 -2.904 -16.927 26.502 Atomic orbital electron populations 1.23620 0.74052 1.06026 1.02733 1.86533 1.25385 1.31407 1.83707 1.21222 0.89104 0.81621 0.71867 1.90817 1.67347 1.36939 1.47351 1.18905 0.88979 0.94911 1.09858 1.21649 0.93511 0.98465 0.95088 1.21336 0.94656 0.97961 0.99269 1.21700 1.01203 0.92283 0.96935 1.17632 0.90913 0.86254 1.01804 1.43413 1.23781 1.11775 1.51734 1.21582 0.80171 0.92290 0.76333 1.90810 1.62731 1.43645 1.46048 1.21933 0.97156 0.92773 1.04715 1.21407 0.95308 0.97241 0.88615 0.96864 1.21720 0.99468 0.95407 1.02086 1.60826 1.06855 1.48033 1.15149 1.19071 0.89353 0.89712 0.92826 1.21568 0.99839 1.37710 0.97964 0.92366 1.25985 0.94749 0.95495 1.03719 1.70111 1.06411 1.42710 1.38310 0.85280 0.78648 0.77865 0.78465 1.18824 1.20315 1.19856 1.20996 0.92166 0.98133 0.98856 0.84670 0.91992 0.91529 0.82083 0.82771 0.85635 0.72899 0.83793 0.85397 0.95417 0.89566 0.91099 0.85376 1.03484 0.98137 0.92660 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -6.22 9.81 -56.25 -0.55 -6.77 16 3 C 0.52 11.31 7.90 70.34 0.56 11.87 16 4 O -0.53 -14.08 16.13 19.93 0.32 -13.75 16 5 C -0.12 -2.66 5.87 -20.11 -0.12 -2.78 16 6 C -0.07 -1.28 9.61 22.55 0.22 -1.06 16 7 C -0.11 -2.36 10.02 22.21 0.22 -2.14 16 8 C -0.10 -2.61 8.70 22.45 0.20 -2.42 16 9 C 0.13 3.01 6.29 38.11 0.24 3.25 16 10 N -0.66 -13.24 5.33 -303.60 -1.62 -14.86 16 11 C 0.51 13.93 7.14 87.66 0.63 14.55 16 12 O -0.56 -21.73 12.02 -3.03 -0.04 -21.77 16 13 C -0.13 -2.83 5.30 29.85 0.16 -2.67 16 14 C 0.08 2.98 2.21 44.91 0.10 3.08 16 15 H 0.01 0.55 7.61 -2.38 -0.02 0.53 16 16 C -0.13 -3.85 9.41 71.98 0.68 -3.17 16 17 N -0.68 -31.13 6.17 -495.58 -3.06 -34.19 16 18 C 0.22 12.74 5.24 85.56 0.45 13.19 16 19 C -0.53 -32.77 9.32 25.60 0.24 -32.53 16 20 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 21 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 22 N -0.93 -59.63 13.29 21.45 0.28 -59.34 16 23 Si 0.97 46.85 29.54 68.60 2.03 48.87 16 24 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 27 C -0.08 -1.74 9.51 22.67 0.22 -1.52 16 28 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.16 2.20 7.60 -2.91 -0.02 2.18 16 32 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.13 3.85 6.22 -2.91 -0.02 3.83 16 34 H 0.43 4.89 8.82 -92.71 -0.82 4.08 16 35 H 0.14 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.03 0.99 7.45 -2.38 -0.02 0.98 16 38 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.33 15.42 6.49 -89.69 -0.58 14.84 16 41 H -0.05 -3.43 8.06 -2.39 -0.02 -3.45 16 42 H 0.00 0.04 7.44 -2.39 -0.02 0.02 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.15 2.85 7.65 -2.91 -0.02 2.83 16 Total: -1.00 -83.65 374.67 2.44 -81.21 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.37 Total: 21.07 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.43 Total: -0.49 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.39 Total: -108.39 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.27 Total: -42.29 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -83.65 2.44 -81.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425988872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.581 kcal (2) G-P(sol) polarization free energy of solvation -83.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds