Wall clock time and date at job start Tue Mar 31 2020 13:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34712 * 117.00273 * 2 1 4 4 O 1.21466 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.47744 * 119.99832 * 180.02562 * 3 2 1 6 6 C 1.39670 * 120.11602 * 359.97438 * 5 3 2 7 7 C 1.37966 * 119.98885 * 180.02562 * 6 5 3 8 8 C 1.38268 * 120.22708 * 359.72355 * 7 6 5 9 9 C 1.38962 * 120.23307 * 0.55107 * 8 7 6 10 10 N 1.39953 * 119.99514 * 179.72519 * 9 8 7 11 11 C 1.34775 * 119.99805 * 214.82593 * 10 9 8 12 12 O 1.21292 * 119.99960 * 355.38720 * 11 10 9 13 13 C 1.50697 * 120.00251 * 175.38439 * 11 10 9 14 14 C 1.53003 * 109.47529 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.46967 * 304.99997 * 14 13 11 16 16 C 1.53004 * 109.47131 * 184.99819 * 14 13 11 17 17 N 1.46899 * 109.46883 * 65.00391 * 14 13 11 18 18 C 1.46902 * 110.99971 * 205.00131 * 17 14 13 19 19 C 1.50700 * 109.47219 * 179.97438 * 18 17 14 20 20 H 1.07994 * 119.99811 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99904 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99879 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00220 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47205 * 89.99475 * 23 21 19 25 25 H 1.48501 * 109.47263 * 209.99937 * 23 21 19 26 26 H 1.48506 * 109.46622 * 329.99531 * 23 21 19 27 27 C 1.38628 * 120.00252 * 359.45236 * 9 8 7 28 28 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46650 * 299.99579 * 1 2 3 30 30 H 1.08994 * 109.46845 * 59.99210 * 1 2 3 31 31 H 1.07996 * 120.00349 * 0.03799 * 6 5 3 32 32 H 1.07994 * 119.88543 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.88240 * 180.29880 * 8 7 6 34 34 H 0.96994 * 120.00437 * 34.82802 * 10 9 8 35 35 H 1.08998 * 109.47161 * 300.00588 * 13 11 10 36 36 H 1.09002 * 109.47265 * 59.99866 * 13 11 10 37 37 H 1.09001 * 109.46497 * 179.97438 * 16 14 13 38 38 H 1.08997 * 109.47351 * 300.00506 * 16 14 13 39 39 H 1.09004 * 109.46666 * 60.00742 * 16 14 13 40 40 H 1.00903 * 110.99754 * 328.94957 * 17 14 13 41 41 H 1.09001 * 109.46911 * 300.00166 * 18 17 14 42 42 H 1.08999 * 109.46998 * 59.99636 * 18 17 14 43 43 H 0.96999 * 119.99594 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.10840 * 180.25501 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4022 2.2190 0.0005 5 6 3.5391 1.2775 -0.0006 6 6 4.3021 0.1076 -0.0006 7 6 5.6797 0.1827 -0.0006 8 6 6.3097 1.4136 -0.0063 9 6 5.5597 2.5835 -0.0006 10 7 6.2026 3.8266 -0.0007 11 6 5.6639 4.8638 0.6704 12 8 4.5814 4.7441 1.2043 13 6 6.4064 6.1723 0.7576 14 6 5.5818 7.1737 1.5689 15 1 4.5883 7.2662 1.1301 16 6 6.2756 8.5373 1.5526 17 7 5.4632 6.7012 2.9547 18 6 4.2612 7.2499 3.5969 19 6 4.1731 6.7438 5.0136 20 1 4.9342 6.0814 5.3987 21 6 3.1210 7.1267 5.8182 22 7 2.1945 7.9339 5.3494 23 14 3.0121 6.5001 7.5746 24 1 3.7220 7.4390 8.4800 25 1 1.5864 6.4052 7.9789 26 1 3.6416 5.1578 7.6611 27 6 4.1750 2.5192 -0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.8137 -0.8556 -0.0008 32 1 6.2680 -0.7229 -0.0010 33 1 7.3884 1.4659 -0.0112 34 1 7.0358 3.9418 -0.4837 35 1 7.3674 6.0128 1.2465 36 1 6.5702 6.5646 -0.2461 37 1 5.6878 9.2508 2.1302 38 1 7.2691 8.4448 1.9913 39 1 6.3636 8.8879 0.5242 40 1 5.4661 5.6930 2.9946 41 1 4.3169 8.3384 3.6022 42 1 3.3771 6.9341 3.0430 43 1 1.4545 8.2035 5.9156 44 1 3.5904 3.4273 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425988875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:33 Heat of formation + Delta-G solvation = -122.126907 kcal Electronic energy + Delta-G solvation = -26545.967623 eV Core-core repulsion = 22655.181599 eV Total energy + Delta-G solvation = -3890.786024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.96773 -41.37552 -39.62109 -37.70400 -37.59826 -35.90705 -35.02518 -32.56487 -32.39618 -31.06759 -28.93483 -28.50603 -28.04348 -25.29124 -24.41669 -23.63168 -22.18813 -21.89751 -21.03987 -19.50847 -18.60637 -18.48257 -18.00111 -17.51307 -17.35322 -16.97907 -16.92246 -16.60339 -16.25981 -15.70415 -15.59441 -14.97181 -14.79641 -14.61618 -14.59913 -14.41623 -13.85132 -13.76597 -13.59477 -13.21014 -13.08829 -12.91670 -12.86686 -12.79487 -12.69279 -12.65119 -12.41050 -12.00112 -11.93995 -11.81965 -11.74227 -11.50751 -11.28108 -10.86868 -10.68636 -10.10123 -9.29696 -9.12382 -8.25223 -6.36893 -0.42524 0.22759 1.31556 1.33987 1.38582 1.49287 1.51767 1.59519 2.01524 2.36627 2.73742 3.07303 3.56362 3.58724 3.64165 3.84719 3.90619 4.10017 4.14338 4.23273 4.24574 4.35474 4.38453 4.44797 4.53994 4.62724 4.69980 4.80556 4.83987 4.91910 5.07161 5.09473 5.18366 5.21012 5.25687 5.30612 5.31925 5.38555 5.44645 5.59070 5.87324 6.01746 6.36737 6.44182 6.55187 6.71261 6.86641 7.14887 7.33438 8.87278 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009267 B = 0.003754 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.787596 B = 7457.085262 C = 9303.248492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.502 3.498 4 O -0.547 6.547 5 C -0.136 4.136 6 C -0.072 4.072 7 C -0.102 4.102 8 C -0.090 4.090 9 C 0.123 3.877 10 N -0.655 5.655 11 C 0.499 3.501 12 O -0.563 6.563 13 C -0.123 4.123 14 C 0.082 3.918 15 H 0.004 0.996 16 C -0.127 4.127 17 N -0.673 5.673 18 C 0.218 3.782 19 C -0.536 4.536 20 H 0.061 0.939 21 C -0.004 4.004 22 N -0.937 5.937 23 Si 0.977 3.023 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.265 1.265 27 C -0.092 4.092 28 H 0.146 0.854 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.161 0.839 32 H 0.182 0.818 33 H 0.177 0.823 34 H 0.436 0.564 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.328 0.672 41 H 0.001 0.999 42 H -0.061 1.061 43 H 0.265 0.735 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.601 -19.403 -17.858 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.349 3.651 4 O -0.439 6.439 5 C -0.138 4.138 6 C -0.090 4.090 7 C -0.120 4.120 8 C -0.110 4.110 9 C 0.028 3.972 10 N -0.304 5.304 11 C 0.289 3.711 12 O -0.440 6.440 13 C -0.163 4.163 14 C -0.029 4.029 15 H 0.023 0.977 16 C -0.185 4.185 17 N -0.304 5.304 18 C 0.090 3.910 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.201 4.201 22 N -0.578 5.578 23 Si 0.800 3.200 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.190 1.190 27 C -0.112 4.112 28 H 0.164 0.836 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.178 0.822 32 H 0.200 0.800 33 H 0.194 0.806 34 H 0.277 0.723 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.145 0.855 41 H 0.019 0.981 42 H -0.043 1.043 43 H 0.073 0.927 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.901 -18.554 -17.183 27.949 hybrid contribution -1.893 0.121 0.323 1.925 sum 10.008 -18.432 -16.860 26.910 Atomic orbital electron populations 1.23615 0.74401 1.06222 1.02271 1.86501 1.25100 1.30932 1.83879 1.21704 0.90074 0.81511 0.71782 1.90871 1.67851 1.37711 1.47441 1.19023 0.88438 0.95516 1.10786 1.21741 0.94959 0.97119 0.95194 1.21490 0.93409 0.98916 0.98156 1.21686 1.02046 0.89836 0.97458 1.17776 0.90320 0.86979 1.02111 1.43343 1.27605 1.07608 1.51795 1.21725 0.85813 0.87017 0.76570 1.90873 1.23186 1.83373 1.46566 1.21921 1.00347 0.89336 1.04662 1.21441 0.96489 0.96242 0.88707 0.97747 1.21710 1.00702 0.93966 1.02114 1.60858 1.40809 1.13459 1.15293 1.19065 0.85248 0.93709 0.92953 1.21555 1.08635 1.29198 0.97999 0.92030 1.26057 0.94820 0.95239 1.04022 1.70128 1.13129 1.35997 1.38503 0.85281 0.77405 0.79050 0.78243 1.18825 1.20655 1.18972 1.21254 0.95031 0.97097 0.97860 0.83638 0.92931 0.91937 0.82160 0.80027 0.80555 0.72348 0.84686 0.83798 0.95593 0.90623 0.89559 0.85458 0.98059 1.04313 0.92671 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.57 113.37 1.20 1.73 16 2 O -0.35 -8.65 9.81 -56.22 -0.55 -9.20 16 3 C 0.50 16.42 7.90 70.34 0.56 16.98 16 4 O -0.55 -22.99 16.13 19.95 0.32 -22.66 16 5 C -0.14 -3.88 5.87 -20.11 -0.12 -4.00 16 6 C -0.07 -1.29 9.61 22.55 0.22 -1.08 16 7 C -0.10 -1.22 10.02 22.21 0.22 -1.00 16 8 C -0.09 -1.23 9.96 22.45 0.22 -1.01 16 9 C 0.12 2.84 6.29 38.11 0.24 3.08 16 10 N -0.66 -12.99 5.34 -303.60 -1.62 -14.61 16 11 C 0.50 14.86 7.14 87.66 0.63 15.49 16 12 O -0.56 -24.99 12.02 -3.07 -0.04 -25.02 16 13 C -0.12 -2.91 5.30 29.85 0.16 -2.75 16 14 C 0.08 3.06 2.21 44.92 0.10 3.16 16 15 H 0.00 0.20 7.61 -2.39 -0.02 0.18 16 16 C -0.13 -3.96 9.41 71.98 0.68 -3.28 16 17 N -0.67 -32.40 6.17 -495.57 -3.06 -35.46 16 18 C 0.22 13.39 5.24 85.56 0.45 13.84 16 19 C -0.54 -34.17 9.32 25.60 0.24 -33.93 16 20 H 0.06 3.80 7.81 -2.91 -0.02 3.78 16 21 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 22 N -0.94 -62.20 13.29 21.45 0.28 -61.92 16 23 Si 0.98 48.25 29.54 68.60 2.03 50.27 16 24 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 27 C -0.09 -2.97 8.24 22.67 0.19 -2.78 16 28 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.16 2.11 7.61 -2.91 -0.02 2.09 16 32 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 33 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.44 3.90 8.82 -92.71 -0.82 3.09 16 35 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.33 16.14 6.49 -89.69 -0.58 15.55 16 41 H 0.00 0.09 7.44 -2.39 -0.02 0.07 16 42 H -0.06 -4.25 8.06 -2.39 -0.02 -4.27 16 43 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 44 H 0.11 4.51 5.81 -2.91 -0.02 4.49 16 Total: -1.00 -97.40 374.66 2.43 -94.97 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.37 Total: 18.96 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.43 Total: 4.67 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.39 Total: -111.99 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -0.27 Total: -56.89 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.27 kcal Total: -97.40 2.43 -94.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425988875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.162 kcal (2) G-P(sol) polarization free energy of solvation -97.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds