Wall clock time and date at job start Tue Mar 31 2020 13:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47020 * 2 1 4 4 C 1.53009 * 109.47006 * 119.99416 * 2 1 3 5 5 C 1.53007 * 109.46919 * 185.00196 * 4 2 1 6 6 C 1.50699 * 109.46698 * 180.02562 * 5 4 2 7 7 C 1.38247 * 119.92634 * 270.01805 * 6 5 4 8 8 C 1.38240 * 120.14459 * 179.75199 * 7 6 5 9 9 C 1.38552 * 120.02633 * 0.42901 * 8 7 6 10 10 C 1.39265 * 119.82706 * 359.57585 * 9 8 7 11 11 C 1.38231 * 119.92969 * 90.00217 * 6 5 4 12 12 O 1.36496 * 108.64230 * 180.24572 * 10 9 8 13 13 C 1.43981 * 105.48444 * 342.72036 * 12 10 9 14 14 O 1.36505 * 131.53353 * 179.87931 * 9 8 7 15 15 N 1.46494 * 109.47788 * 239.99710 * 2 1 3 16 16 C 1.34777 * 119.99914 * 84.99466 * 15 2 1 17 17 O 1.21582 * 120.00276 * 0.02562 * 16 15 2 18 18 N 1.34782 * 119.99775 * 180.02562 * 16 15 2 19 19 C 1.46500 * 119.99730 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.46909 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00076 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00014 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99859 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00000 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47318 * 89.99774 * 24 22 20 26 26 H 1.48508 * 109.46954 * 209.99806 * 24 22 20 27 27 H 1.48499 * 109.47262 * 329.99398 * 24 22 20 28 28 H 1.08997 * 109.47046 * 300.00124 * 1 2 3 29 29 H 1.08999 * 109.46940 * 60.00050 * 1 2 3 30 30 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46930 * 65.00554 * 4 2 1 32 32 H 1.08996 * 109.47059 * 304.99803 * 4 2 1 33 33 H 1.08993 * 109.47027 * 60.00417 * 5 4 2 34 34 H 1.08998 * 109.46716 * 300.00181 * 5 4 2 35 35 H 1.07994 * 119.93290 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.99327 * 180.33354 * 8 7 6 37 37 H 1.08003 * 119.98943 * 0.02562 * 11 6 5 38 38 H 1.09007 * 110.56955 * 268.54960 * 13 12 10 39 39 H 1.09003 * 110.57719 * 145.67764 * 13 12 10 40 40 H 0.97004 * 120.00196 * 265.00779 * 15 2 1 41 41 H 0.96997 * 120.00234 * 359.97438 * 18 16 15 42 42 H 1.08996 * 109.46867 * 299.99514 * 19 18 16 43 43 H 1.08996 * 109.47405 * 59.99614 * 19 18 16 44 44 H 0.96998 * 119.99519 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6131 1.3138 6 6 4.0671 -1.3240 2.5441 7 6 4.1982 -0.6333 3.7345 8 6 4.6536 -1.2822 4.8670 9 6 4.9885 -2.6254 4.8090 10 6 4.8566 -3.3211 3.6098 11 6 4.3955 -2.6652 2.4799 12 8 5.2407 -4.6152 3.8116 13 6 5.9943 -4.6057 5.0384 14 8 5.4555 -3.4837 5.7623 15 7 2.0184 -0.6906 -1.1960 16 6 2.1471 -0.0183 -2.3570 17 8 1.8582 1.1614 -2.4117 18 7 2.5960 -0.6539 -3.4576 19 6 2.7364 0.0770 -4.7194 20 6 3.2530 -0.8550 -5.7850 21 1 3.4568 -1.8884 -5.5460 22 6 3.4655 -0.3886 -7.0650 23 7 3.2169 0.8696 -7.3561 24 14 4.1051 -1.5441 -8.3859 25 1 2.9595 -2.1881 -9.0774 26 1 4.9083 -0.7747 -9.3700 27 1 4.9562 -2.5880 -7.7606 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7517 -1.7714 1.2058 32 1 1.6053 -0.2615 2.1370 33 1 3.8531 0.4371 1.3575 34 1 3.9994 -1.0727 0.4261 35 1 3.9400 0.4142 3.7809 36 1 4.7500 -0.7416 5.7970 37 1 4.2923 -3.2023 1.5485 38 1 7.0549 -4.4567 4.8352 39 1 5.8358 -5.5308 5.5926 40 1 2.2491 -1.6318 -1.1525 41 1 2.8268 -1.5950 -3.4139 42 1 1.7661 0.4716 -5.0206 43 1 3.4380 0.9005 -4.5862 44 1 3.3668 1.1978 -8.2564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426436082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:56 Heat of formation + Delta-G solvation = -83.117568 kcal Electronic energy + Delta-G solvation = -25757.032988 eV Core-core repulsion = 21867.938536 eV Total energy + Delta-G solvation = -3889.094452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.47210 -39.46879 -38.62361 -36.61306 -36.25186 -34.04325 -32.94688 -32.28679 -30.84831 -30.44538 -28.51724 -26.92402 -26.16239 -24.33306 -23.28573 -22.80392 -21.76965 -20.81943 -20.09633 -18.25562 -18.10501 -17.82688 -17.68360 -16.52746 -16.08675 -15.92099 -15.05059 -14.83006 -14.79047 -14.50606 -14.23576 -14.12434 -14.07702 -13.74927 -13.31922 -13.25035 -13.16475 -12.98726 -12.88037 -12.28338 -12.08561 -11.93122 -11.80523 -11.64408 -11.35718 -11.05951 -10.94109 -10.92580 -10.84446 -10.69808 -10.27651 -9.34981 -9.33415 -9.15662 -8.73931 -8.65087 -8.31297 -7.71871 -6.13199 -4.19472 0.80977 0.90220 2.41470 3.08705 3.24961 3.26129 3.31421 3.33901 3.45551 4.00884 4.15390 4.29074 4.34866 4.37422 4.54564 4.66915 4.82597 4.87224 4.96730 5.00563 5.04540 5.17454 5.22898 5.23663 5.46058 5.55512 5.62746 5.67675 5.74145 5.77423 5.83118 5.93771 5.97613 6.10226 6.18786 6.29126 6.38031 6.79888 6.98314 7.17364 7.55905 7.59235 7.60629 7.95033 8.08384 8.79959 8.99699 9.38047 9.52422 10.97051 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.002267 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.933257 B =12350.318467 C =13695.590301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.162 3.838 3 H 0.087 0.913 4 C -0.119 4.119 5 C -0.080 4.080 6 C -0.064 4.064 7 C -0.108 4.108 8 C -0.097 4.097 9 C 0.020 3.980 10 C 0.033 3.967 11 C -0.097 4.097 12 O -0.309 6.309 13 C 0.213 3.787 14 O -0.312 6.312 15 N -0.753 5.753 16 C 0.693 3.307 17 O -0.602 6.602 18 N -0.731 5.731 19 C 0.267 3.733 20 C -0.541 4.541 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.903 3.097 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.389 0.611 41 H 0.385 0.615 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -8.689 26.885 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 H 0.105 0.895 4 C -0.157 4.157 5 C -0.117 4.117 6 C -0.064 4.064 7 C -0.126 4.126 8 C -0.116 4.116 9 C -0.024 4.024 10 C -0.011 4.011 11 C -0.116 4.116 12 O -0.226 6.226 13 C 0.101 3.899 14 O -0.228 6.228 15 N -0.410 5.410 16 C 0.393 3.607 17 O -0.481 6.481 18 N -0.383 5.383 19 C 0.146 3.854 20 C -0.579 4.579 21 H 0.080 0.920 22 C -0.141 4.141 23 N -0.523 5.523 24 Si 0.731 3.269 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.101 0.899 39 H 0.148 0.852 40 H 0.222 0.778 41 H 0.217 0.783 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.385 -7.623 26.742 27.910 hybrid contribution 0.736 -1.761 -0.603 2.002 sum 3.121 -9.384 26.139 27.948 Atomic orbital electron populations 1.22199 0.95875 1.01762 1.02399 1.20687 0.93489 0.97350 0.82897 0.89469 1.21903 0.94419 1.01532 0.97879 1.20632 0.95730 1.00842 0.94484 1.19716 0.98198 0.92514 0.96012 1.20876 1.00042 1.00467 0.91177 1.20073 1.01916 0.89477 1.00113 1.19818 1.03331 0.92687 0.86539 1.19794 1.02954 0.83043 0.95313 1.20007 1.01977 0.93584 0.96007 1.87374 1.69347 1.23739 1.42113 1.25614 0.94946 0.90741 0.78557 1.87352 1.75686 1.29840 1.29949 1.45283 1.73240 1.13207 1.09259 1.16167 0.78861 0.85289 0.80396 1.90862 1.57872 1.14657 1.84686 1.45726 1.68710 1.13539 1.10342 1.18951 0.97147 0.91960 0.77321 1.21233 1.45655 0.96510 0.94537 0.92002 1.24947 0.95312 0.95301 0.98509 1.69982 1.47478 1.14090 1.20751 0.86422 0.78850 0.80452 0.81200 1.20511 1.21037 1.19796 0.92203 0.91707 0.92852 0.91265 0.90284 0.90091 0.90108 0.84301 0.84790 0.84591 0.89914 0.85228 0.77776 0.78261 0.95828 0.95806 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.15 0.35 -1.56 16 2 C 0.16 1.92 2.57 -67.93 -0.17 1.75 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 4 C -0.12 -1.00 4.74 -26.72 -0.13 -1.13 16 5 C -0.08 -0.69 5.23 -27.88 -0.15 -0.83 16 6 C -0.06 -0.56 5.13 -104.62 -0.54 -1.09 16 7 C -0.11 -0.85 9.69 -39.58 -0.38 -1.23 16 8 C -0.10 -0.82 10.06 -39.46 -0.40 -1.22 16 9 C 0.02 0.21 7.15 -39.08 -0.28 -0.07 16 10 C 0.03 0.35 7.15 -39.08 -0.28 0.07 16 11 C -0.10 -0.93 9.71 -39.47 -0.38 -1.31 16 12 O -0.31 -3.18 11.40 -45.68 -0.52 -3.70 16 13 C 0.21 1.51 8.89 101.05 0.90 2.41 16 14 O -0.31 -3.05 11.40 -45.70 -0.52 -3.57 16 15 N -0.75 -10.54 4.53 -58.68 -0.27 -10.81 16 16 C 0.69 13.94 8.53 -86.91 -0.74 13.20 16 17 O -0.60 -14.76 16.01 5.29 0.08 -14.67 16 18 N -0.73 -15.51 5.55 -66.42 -0.37 -15.88 16 19 C 0.27 7.17 5.43 -5.20 -0.03 7.14 16 20 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 21 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 24 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.39 4.37 8.62 -40.82 -0.35 4.01 16 41 H 0.39 6.98 8.33 -40.82 -0.34 6.64 16 42 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -34.71 375.20 -9.38 -44.08 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.51 Total: 5.77 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.64 Total: 2.71 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.10 Total: -52.18 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.96 Total: -21.94 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.71 -9.38 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426436082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.034 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds