Wall clock time and date at job start Tue Mar 31 2020 13:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47020 * 2 1 4 4 C 1.53009 * 109.47006 * 119.99416 * 2 1 3 5 5 C 1.53007 * 109.46919 * 185.00196 * 4 2 1 6 6 C 1.50699 * 109.46698 * 180.02562 * 5 4 2 7 7 C 1.38247 * 119.92634 * 270.01805 * 6 5 4 8 8 C 1.38240 * 120.14459 * 179.75199 * 7 6 5 9 9 C 1.38552 * 120.02633 * 0.42901 * 8 7 6 10 10 C 1.39265 * 119.82706 * 359.57585 * 9 8 7 11 11 C 1.38231 * 119.92969 * 90.00217 * 6 5 4 12 12 O 1.36496 * 108.64230 * 180.24572 * 10 9 8 13 13 C 1.43981 * 105.48444 * 342.72036 * 12 10 9 14 14 O 1.36505 * 131.53353 * 179.87931 * 9 8 7 15 15 N 1.46494 * 109.47788 * 239.99710 * 2 1 3 16 16 C 1.34777 * 119.99914 * 84.99466 * 15 2 1 17 17 O 1.21582 * 120.00276 * 0.02562 * 16 15 2 18 18 N 1.34782 * 119.99775 * 180.02562 * 16 15 2 19 19 C 1.46500 * 119.99730 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.46909 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00076 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00014 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99859 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00000 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47318 * 89.99774 * 24 22 20 26 26 H 1.48508 * 109.46954 * 209.99806 * 24 22 20 27 27 H 1.48499 * 109.47262 * 329.99398 * 24 22 20 28 28 H 1.08997 * 109.47046 * 300.00124 * 1 2 3 29 29 H 1.08999 * 109.46940 * 60.00050 * 1 2 3 30 30 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46930 * 65.00554 * 4 2 1 32 32 H 1.08996 * 109.47059 * 304.99803 * 4 2 1 33 33 H 1.08993 * 109.47027 * 60.00417 * 5 4 2 34 34 H 1.08998 * 109.46716 * 300.00181 * 5 4 2 35 35 H 1.07994 * 119.93290 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.99327 * 180.33354 * 8 7 6 37 37 H 1.08003 * 119.98943 * 0.02562 * 11 6 5 38 38 H 1.09007 * 110.56955 * 268.54960 * 13 12 10 39 39 H 1.09003 * 110.57719 * 145.67764 * 13 12 10 40 40 H 0.97004 * 120.00196 * 265.00779 * 15 2 1 41 41 H 0.96997 * 120.00234 * 359.97438 * 18 16 15 42 42 H 1.08996 * 109.46867 * 299.99514 * 19 18 16 43 43 H 1.08996 * 109.47405 * 59.99614 * 19 18 16 44 44 H 0.96998 * 119.99519 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6131 1.3138 6 6 4.0671 -1.3240 2.5441 7 6 4.1982 -0.6333 3.7345 8 6 4.6536 -1.2822 4.8670 9 6 4.9885 -2.6254 4.8090 10 6 4.8566 -3.3211 3.6098 11 6 4.3955 -2.6652 2.4799 12 8 5.2407 -4.6152 3.8116 13 6 5.9943 -4.6057 5.0384 14 8 5.4555 -3.4837 5.7623 15 7 2.0184 -0.6906 -1.1960 16 6 2.1471 -0.0183 -2.3570 17 8 1.8582 1.1614 -2.4117 18 7 2.5960 -0.6539 -3.4576 19 6 2.7364 0.0770 -4.7194 20 6 3.2530 -0.8550 -5.7850 21 1 3.4568 -1.8884 -5.5460 22 6 3.4655 -0.3886 -7.0650 23 7 3.2169 0.8696 -7.3561 24 14 4.1051 -1.5441 -8.3859 25 1 2.9595 -2.1881 -9.0774 26 1 4.9083 -0.7747 -9.3700 27 1 4.9562 -2.5880 -7.7606 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7517 -1.7714 1.2058 32 1 1.6053 -0.2615 2.1370 33 1 3.8531 0.4371 1.3575 34 1 3.9994 -1.0727 0.4261 35 1 3.9400 0.4142 3.7809 36 1 4.7500 -0.7416 5.7970 37 1 4.2923 -3.2023 1.5485 38 1 7.0549 -4.4567 4.8352 39 1 5.8358 -5.5308 5.5926 40 1 2.2491 -1.6318 -1.1525 41 1 2.8268 -1.5950 -3.4139 42 1 1.7661 0.4716 -5.0206 43 1 3.4380 0.9005 -4.5862 44 1 3.3668 1.1978 -8.2564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426436082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:56 Heat of formation + Delta-G solvation = -107.320249 kcal Electronic energy + Delta-G solvation = -25758.082495 eV Core-core repulsion = 21867.938536 eV Total energy + Delta-G solvation = -3890.143959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.10946 -40.94486 -39.40131 -37.43455 -37.26886 -35.97752 -34.41583 -33.75321 -31.79949 -31.34280 -29.28212 -28.89824 -26.76072 -25.22416 -24.63308 -23.94074 -22.62110 -22.00215 -21.52395 -19.80089 -18.88246 -18.47686 -18.33212 -17.99500 -17.39363 -17.11401 -16.59996 -16.27727 -15.64856 -15.46260 -15.42177 -15.23189 -14.86478 -14.78387 -14.55602 -14.23034 -13.99449 -13.98673 -13.90421 -13.78067 -13.61479 -13.09894 -12.91387 -12.79560 -12.69934 -12.44190 -12.20461 -12.16448 -11.74217 -11.63517 -11.53750 -11.44536 -11.11141 -10.77832 -10.17679 -9.81497 -9.51949 -8.98749 -8.26372 -6.42379 0.13359 0.24435 1.44440 1.47063 1.58022 1.80895 1.99890 2.35148 2.41653 2.52933 2.58626 3.08567 3.50321 3.60934 3.67170 3.80864 4.02445 4.04384 4.13192 4.22234 4.26254 4.31955 4.37762 4.53625 4.61775 4.70127 4.85350 4.90155 4.98204 5.06817 5.08658 5.12705 5.21107 5.29113 5.31060 5.33512 5.40116 5.49712 5.53351 5.61374 5.71664 5.79245 5.89203 6.14717 6.35962 6.70024 7.27311 7.40844 7.82957 8.85946 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.002267 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.933257 B =12350.318467 C =13695.590301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.065 0.935 4 C -0.105 4.105 5 C -0.076 4.076 6 C -0.065 4.065 7 C -0.103 4.103 8 C -0.100 4.100 9 C 0.003 3.997 10 C 0.012 3.988 11 C -0.106 4.106 12 O -0.329 6.329 13 C 0.205 3.795 14 O -0.327 6.327 15 N -0.727 5.727 16 C 0.692 3.308 17 O -0.649 6.649 18 N -0.727 5.727 19 C 0.287 3.713 20 C -0.553 4.553 21 H 0.083 0.917 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.985 3.015 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.256 1.256 28 H 0.085 0.915 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.159 0.841 40 H 0.408 0.592 41 H 0.403 0.597 42 H -0.017 1.017 43 H -0.015 1.015 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -10.729 28.209 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.084 0.916 4 C -0.143 4.143 5 C -0.113 4.113 6 C -0.065 4.065 7 C -0.121 4.121 8 C -0.119 4.119 9 C -0.041 4.041 10 C -0.032 4.032 11 C -0.125 4.125 12 O -0.246 6.246 13 C 0.094 3.906 14 O -0.244 6.244 15 N -0.384 5.384 16 C 0.392 3.608 17 O -0.532 6.532 18 N -0.380 5.380 19 C 0.163 3.837 20 C -0.591 4.591 21 H 0.101 0.899 22 C -0.197 4.197 23 N -0.569 5.569 24 Si 0.808 3.192 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.180 1.180 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.176 0.824 40 H 0.244 0.756 41 H 0.238 0.762 42 H 0.001 0.999 43 H 0.003 0.997 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.818 -9.736 28.143 29.912 hybrid contribution 0.589 -1.093 -0.899 1.533 sum 3.407 -10.829 27.244 29.514 Atomic orbital electron populations 1.22161 0.95325 1.02548 1.01808 1.20910 0.93913 0.96690 0.83178 0.91637 1.21814 0.94180 1.01925 0.96351 1.20575 0.95795 1.00768 0.94200 1.19709 0.98361 0.92189 0.96227 1.21171 0.98920 1.01466 0.90530 1.20386 1.01268 0.89065 1.01144 1.20134 1.03887 0.93432 0.86614 1.20032 1.03872 0.83387 0.95907 1.20177 1.02124 0.94098 0.96104 1.87328 1.69958 1.23867 1.43403 1.26055 0.95415 0.91259 0.77857 1.87313 1.75979 1.30495 1.30567 1.45096 1.71565 1.13896 1.07834 1.16335 0.78307 0.84782 0.81420 1.90831 1.59704 1.17058 1.85612 1.45314 1.69362 1.14121 1.09232 1.18358 0.93860 0.91604 0.79867 1.21606 1.45421 0.97335 0.94759 0.89916 1.26060 0.95254 0.97009 1.01334 1.70146 1.48682 1.16532 1.21572 0.85157 0.78389 0.78126 0.77522 1.19672 1.20977 1.17950 0.89578 0.95541 0.91326 0.89938 0.88081 0.90068 0.91004 0.81976 0.82970 0.84111 0.88297 0.82376 0.75607 0.76156 0.99888 0.99731 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.48 71.98 0.68 -2.82 16 2 C 0.16 3.55 2.57 44.99 0.12 3.66 16 3 H 0.07 1.81 7.58 -2.39 -0.02 1.79 16 4 C -0.10 -1.47 4.74 30.60 0.14 -1.32 16 5 C -0.08 -1.15 5.23 29.85 0.16 -1.00 16 6 C -0.06 -0.99 5.13 -19.86 -0.10 -1.09 16 7 C -0.10 -1.37 9.69 22.27 0.22 -1.15 16 8 C -0.10 -1.51 10.06 22.35 0.22 -1.28 16 9 C 0.00 0.06 7.15 22.59 0.16 0.23 16 10 C 0.01 0.25 7.15 22.59 0.16 0.41 16 11 C -0.11 -1.90 9.71 22.34 0.22 -1.68 16 12 O -0.33 -6.53 11.40 -76.01 -0.87 -7.40 16 13 C 0.20 2.67 8.89 113.37 1.01 3.68 16 14 O -0.33 -6.08 11.40 -76.10 -0.87 -6.95 16 15 N -0.73 -19.68 4.53 -457.82 -2.08 -21.76 16 16 C 0.69 28.30 8.53 179.05 1.53 29.83 16 17 O -0.65 -33.23 16.01 -3.98 -0.06 -33.30 16 18 N -0.73 -31.26 5.55 -482.31 -2.68 -33.94 16 19 C 0.29 16.01 5.43 85.63 0.46 16.47 16 20 C -0.55 -30.32 9.28 25.60 0.24 -30.09 16 21 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 22 C 0.00 0.16 5.46 84.66 0.46 0.62 16 23 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 24 Si 0.98 42.52 29.54 68.60 2.03 44.55 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 29 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 34 H 0.07 1.23 7.69 -2.39 -0.02 1.21 16 35 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.41 8.29 8.62 -92.71 -0.80 7.49 16 41 H 0.40 14.25 8.33 -92.71 -0.77 13.48 16 42 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 43 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 44 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -78.97 375.20 0.89 -78.08 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.54 Total: 22.51 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 5.68 Total: 14.47 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -4.47 Total: -111.96 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -1.80 Total: -47.64 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -78.97 0.89 -78.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426436082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.241 kcal (2) G-P(sol) polarization free energy of solvation -78.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds