Wall clock time and date at job start Tue Mar 31 2020 12:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.35750 * 2 1 4 4 C 1.54945 * 110.31224 * 237.85434 * 2 1 3 5 5 C 1.55303 * 100.94564 * 204.64391 * 4 2 1 6 6 H 1.09005 * 111.02031 * 275.86259 * 5 4 2 7 7 C 1.50698 * 110.84972 * 152.32220 * 5 4 2 8 8 O 1.21284 * 120.00193 * 5.71532 * 7 5 4 9 9 N 1.34780 * 120.00146 * 185.71401 * 7 5 4 10 10 C 1.39576 * 120.00255 * 180.02562 * 9 7 5 11 11 N 1.32280 * 119.72409 * 0.26933 * 10 9 7 12 12 C 1.31960 * 121.68686 * 180.31202 * 11 10 9 13 13 C 1.38083 * 120.95304 * 359.70089 * 12 11 10 14 14 C 1.38773 * 119.35857 * 359.97438 * 13 12 11 15 15 C 1.38798 * 118.44616 * 0.02562 * 14 13 12 16 16 O 1.35979 * 120.49650 * 180.02562 * 15 14 13 17 17 C 1.42895 * 117.00348 * 359.97438 * 16 15 14 18 18 C 1.52997 * 109.47503 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47212 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47432 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46890 * 120.00210 * 23 21 19 26 26 H 1.48501 * 109.47062 * 240.00257 * 23 21 19 27 27 C 1.54383 * 102.25169 * 34.13147 * 5 4 2 28 28 O 1.43230 * 107.58897 * 338.64665 * 27 5 4 29 29 H 1.08999 * 109.47188 * 299.31001 * 1 2 3 30 30 H 1.09001 * 109.46565 * 59.31099 * 1 2 3 31 31 H 1.08999 * 109.47342 * 179.30778 * 1 2 3 32 32 H 1.09000 * 111.12643 * 86.72274 * 4 2 1 33 33 H 1.09008 * 111.12524 * 322.56308 * 4 2 1 34 34 H 0.97003 * 119.99562 * 359.97438 * 9 7 5 35 35 H 1.08001 * 119.51881 * 179.68157 * 12 11 10 36 36 H 1.08000 * 120.32268 * 180.02562 * 13 12 11 37 37 H 1.08003 * 120.78113 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.46880 * 60.00048 * 17 16 15 39 39 H 1.08998 * 109.47064 * 300.00873 * 17 16 15 40 40 H 1.09002 * 109.47153 * 60.00043 * 18 17 16 41 41 H 1.09001 * 109.46832 * 300.00234 * 18 17 16 42 42 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 43 43 H 1.09006 * 109.82653 * 98.16168 * 27 5 4 44 44 H 1.09000 * 109.82750 * 219.03867 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0679 -0.7732 -1.2303 5 6 3.4699 -1.2026 -0.7189 6 1 4.2001 -0.4066 -0.8649 7 6 3.9216 -2.4719 -1.3941 8 8 3.2579 -2.9524 -2.2883 9 7 5.0631 -3.0733 -1.0043 10 6 5.4817 -4.2486 -1.6301 11 7 4.7566 -4.7647 -2.6087 12 6 5.1127 -5.8770 -3.2229 13 6 6.2676 -6.5457 -2.8681 14 6 7.0630 -6.0372 -1.8510 15 6 6.6641 -4.8657 -1.2226 16 8 7.4122 -4.3305 -0.2212 17 6 8.6062 -5.0275 0.1402 18 6 9.3087 -4.2809 1.2760 19 6 10.5682 -5.0156 1.6567 20 1 10.8406 -5.9239 1.1399 21 6 11.3732 -4.5275 2.6640 22 7 11.0417 -3.4211 3.2929 23 14 12.9348 -5.4378 3.1354 24 1 13.0807 -6.6449 2.2828 25 1 14.1063 -4.5471 2.9362 26 1 12.8591 -5.8448 4.5616 27 6 3.2112 -1.4420 0.7842 28 8 2.0286 -0.7168 1.1407 29 1 -0.3633 0.5031 0.8961 30 1 -0.3632 0.5245 -0.8838 31 1 -0.3634 -1.0276 -0.0124 32 1 2.1497 -0.1205 -2.0995 33 1 1.4471 -1.6417 -1.4507 34 1 5.5941 -2.6888 -0.2894 35 1 4.4916 -6.2702 -4.0142 36 1 6.5495 -7.4551 -3.3779 37 1 7.9708 -6.5417 -1.5547 38 1 9.2695 -5.0837 -0.7229 39 1 8.3531 -6.0350 0.4701 40 1 8.6452 -4.2250 2.1390 41 1 9.5618 -3.2732 0.9464 42 1 11.6079 -3.0780 4.0019 43 1 3.0624 -2.5059 0.9689 44 1 4.0582 -1.0805 1.3673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439105758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:50 Heat of formation + Delta-G solvation = -103.423589 kcal Electronic energy + Delta-G solvation = -26430.723527 eV Core-core repulsion = 22540.748540 eV Total energy + Delta-G solvation = -3889.974987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.18713 -41.12829 -39.71191 -39.02093 -36.06111 -35.45096 -33.54768 -33.02190 -32.79770 -32.09825 -30.31490 -27.19064 -27.09766 -25.60057 -24.41064 -23.59457 -22.57512 -22.17407 -21.09596 -19.63809 -18.91989 -18.45334 -18.03390 -17.96866 -17.15560 -17.12435 -16.57392 -16.38892 -16.13330 -15.96821 -15.60179 -15.21343 -15.04442 -14.71387 -14.53099 -14.35683 -14.16641 -13.65855 -13.43264 -13.39028 -13.31084 -12.88432 -12.78866 -12.77781 -12.44243 -12.33240 -12.12059 -11.90348 -11.86146 -11.72461 -11.63040 -11.43993 -11.34972 -10.61569 -10.56229 -10.43231 -10.21327 -8.89495 -8.25790 -6.38022 0.05046 0.26712 1.42216 1.42827 1.51689 1.55378 1.73189 2.09770 2.44048 2.71256 2.84702 3.09770 3.15627 3.34689 3.63180 3.78549 3.84129 3.94495 3.96159 4.08812 4.16465 4.19767 4.29083 4.32671 4.43399 4.45470 4.61841 4.65685 4.74542 4.78888 4.85391 4.94718 4.96109 5.10801 5.15236 5.23275 5.29767 5.31084 5.50732 5.51523 5.73210 5.97105 6.07840 6.12752 6.31190 6.77064 6.86379 7.19047 7.32079 8.86966 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.002953 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.316386 B = 9480.144439 C =11588.230120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 H 0.093 0.907 4 C -0.126 4.126 5 C -0.139 4.139 6 H 0.142 0.858 7 C 0.516 3.484 8 O -0.510 6.510 9 N -0.650 5.650 10 C 0.308 3.692 11 N -0.473 5.473 12 C 0.073 3.927 13 C -0.143 4.143 14 C -0.149 4.149 15 C 0.043 3.957 16 O -0.328 6.328 17 C 0.084 3.916 18 C 0.030 3.970 19 C -0.543 4.543 20 H 0.070 0.930 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.969 3.031 24 H -0.258 1.258 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.063 3.937 28 O -0.396 6.396 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.429 0.571 35 H 0.187 0.813 36 H 0.176 0.824 37 H 0.157 0.843 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.266 0.734 43 H 0.059 0.941 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.505 2.107 -11.133 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 H 0.111 0.889 4 C -0.164 4.164 5 C -0.160 4.160 6 H 0.160 0.840 7 C 0.303 3.697 8 O -0.382 6.382 9 N -0.298 5.298 10 C 0.076 3.924 11 N -0.189 5.189 12 C -0.084 4.084 13 C -0.164 4.164 14 C -0.176 4.176 15 C -0.008 4.008 16 O -0.242 6.242 17 C 0.009 3.991 18 C -0.007 4.007 19 C -0.581 4.581 20 H 0.089 0.911 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.794 3.206 24 H -0.182 1.182 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.014 4.014 28 O -0.316 6.316 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.267 0.733 35 H 0.204 0.796 36 H 0.193 0.807 37 H 0.175 0.825 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.865 2.558 -11.545 20.597 hybrid contribution 2.182 -0.676 0.963 2.479 sum -14.683 1.882 -10.582 18.196 Atomic orbital electron populations 1.21904 0.92600 1.02656 1.03565 1.23241 0.95995 0.96019 0.83338 0.88932 1.23216 0.92699 1.01222 0.99216 1.22992 1.01332 0.95549 0.96152 0.84045 1.20925 0.79716 0.85843 0.83210 1.90763 1.53391 1.64542 1.29496 1.43598 1.25186 1.23077 1.37987 1.18017 0.89963 0.90049 0.94364 1.67671 1.30794 1.13625 1.06783 1.23062 0.96141 0.90074 0.99111 1.22287 0.94687 1.02307 0.97119 1.21918 1.02589 0.94990 0.98082 1.19751 0.92609 0.95680 0.92741 1.86023 1.36811 1.52000 1.49319 1.22958 0.82152 0.95728 0.98226 1.18948 0.94189 0.95528 0.92085 1.21425 1.07195 1.10398 1.19096 0.91138 1.25946 1.01771 0.95793 0.95963 1.70100 1.39829 1.22479 1.24360 0.85329 0.78338 0.78783 0.78184 1.18165 1.20476 1.20507 1.23077 0.89117 0.96847 0.92400 1.88423 1.42647 1.65231 1.35324 0.91514 0.89071 0.92959 0.87544 0.90763 0.73276 0.79644 0.80670 0.82537 0.91763 0.91834 0.97967 0.97928 0.92533 0.92275 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.62 71.98 0.69 -1.48 16 2 C 0.07 1.20 4.08 31.26 0.13 1.33 16 3 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.13 -2.29 5.65 32.05 0.18 -2.11 16 5 C -0.14 -2.76 3.39 -10.28 -0.03 -2.79 16 6 H 0.14 2.09 8.14 -2.38 -0.02 2.07 16 7 C 0.52 14.33 6.99 87.66 0.61 14.94 16 8 O -0.51 -17.49 14.02 -3.04 -0.04 -17.54 16 9 N -0.65 -18.79 5.34 -308.02 -1.64 -20.43 16 10 C 0.31 10.02 7.45 132.98 0.99 11.01 16 11 N -0.47 -15.25 7.88 -192.59 -1.52 -16.77 16 12 C 0.07 1.78 11.17 84.64 0.95 2.73 16 13 C -0.14 -3.05 10.10 22.36 0.23 -2.82 16 14 C -0.15 -3.96 9.14 22.53 0.21 -3.76 16 15 C 0.04 1.38 6.72 22.70 0.15 1.53 16 16 O -0.33 -11.95 9.38 -93.32 -0.88 -12.83 16 17 C 0.08 3.22 4.70 71.98 0.34 3.56 16 18 C 0.03 1.48 5.34 29.85 0.16 1.64 16 19 C -0.54 -28.75 9.11 25.60 0.23 -28.52 16 20 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 21 C 0.00 0.22 5.46 84.66 0.46 0.68 16 22 N -0.93 -53.96 13.29 21.45 0.28 -53.68 16 23 Si 0.97 41.76 29.54 68.60 2.03 43.79 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.06 1.32 7.35 72.45 0.53 1.85 16 28 O -0.40 -9.09 11.04 -148.98 -1.64 -10.74 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.67 7.38 -2.38 -0.02 1.65 16 34 H 0.43 11.17 8.04 -92.71 -0.75 10.42 16 35 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.16 3.74 6.44 -2.91 -0.02 3.72 16 38 H 0.06 2.30 7.70 -2.39 -0.02 2.28 16 39 H 0.06 2.29 7.70 -2.39 -0.02 2.27 16 40 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 42 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.06 1.40 7.81 -2.38 -0.02 1.38 16 44 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -71.25 368.56 2.68 -68.57 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.27 Total: 21.83 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.82 Total: -2.21 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -2.88 Total: -90.88 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -2.56 Total: -41.10 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -71.25 2.68 -68.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439105758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.850 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds