Wall clock time and date at job start Tue Mar 31 2020 13:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99624 * 2 1 4 4 H 1.09000 * 109.44064 * 29.91303 * 3 2 1 5 5 C 1.53075 * 109.43616 * 269.99642 * 3 2 1 6 6 C 1.53406 * 108.28496 * 191.68350 * 5 3 2 7 7 O 1.42824 * 108.37147 * 64.66873 * 6 5 3 8 8 C 1.35923 * 117.87125 * 310.93138 * 7 6 5 9 9 C 1.39711 * 118.48802 * 196.91310 * 8 7 6 10 10 N 1.40162 * 119.95351 * 0.24787 * 9 8 7 11 11 C 1.34781 * 120.00055 * 214.97484 * 10 9 8 12 12 O 1.21593 * 120.00150 * 355.52010 * 11 10 9 13 13 N 1.34776 * 120.00029 * 175.51129 * 11 10 9 14 14 C 1.46495 * 119.99790 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47339 * 325.00038 * 14 13 11 16 16 C 1.53001 * 109.47154 * 85.00516 * 14 13 11 17 17 C 1.50708 * 109.46887 * 205.00321 * 14 13 11 18 18 H 1.07993 * 120.00157 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99872 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99872 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99814 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46990 * 60.00092 * 21 19 17 23 23 H 1.48504 * 109.46707 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47043 * 299.99456 * 21 19 17 25 25 C 1.38515 * 120.09480 * 180.52161 * 9 8 7 26 26 C 1.38260 * 119.87355 * 359.50903 * 25 9 8 27 27 C 1.38072 * 120.03986 * 0.47468 * 26 25 9 28 28 C 1.38159 * 121.84277 * 17.10969 * 8 7 6 29 29 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47671 * 300.00069 * 1 2 3 31 31 H 1.09001 * 109.46869 * 59.99909 * 1 2 3 32 32 H 1.08998 * 109.69539 * 71.98462 * 5 3 2 33 33 H 1.09002 * 109.73379 * 311.39889 * 5 3 2 34 34 H 1.09007 * 109.68559 * 304.94791 * 6 5 3 35 35 H 1.08998 * 109.71845 * 184.41011 * 6 5 3 36 36 H 0.96998 * 120.00213 * 34.97470 * 10 9 8 37 37 H 0.96999 * 119.99557 * 0.02562 * 13 11 10 38 38 H 1.09000 * 109.46889 * 299.99855 * 16 14 13 39 39 H 1.09005 * 109.46898 * 179.97438 * 16 14 13 40 40 H 1.09005 * 109.47143 * 59.99950 * 16 14 13 41 41 H 0.97004 * 119.99616 * 180.02562 * 20 19 17 42 42 H 1.07999 * 120.06128 * 179.76473 * 25 9 8 43 43 H 1.08005 * 119.97638 * 180.19486 * 26 25 9 44 44 H 1.07998 * 119.77571 * 179.67756 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3438 1.9993 0.5126 5 6 2.2174 1.7708 -1.4435 6 6 3.0990 3.0260 -1.4227 7 8 4.3861 2.6639 -0.9205 8 6 4.4391 1.9393 0.2283 9 6 5.6493 1.8805 0.9238 10 7 6.7712 2.5641 0.4352 11 6 8.0018 2.0366 0.5897 12 8 8.1478 1.0092 1.2235 13 7 9.0707 2.6479 0.0416 14 6 10.4082 2.0742 0.2091 15 1 10.4859 1.6152 1.1947 16 6 10.6468 1.0138 -0.8677 17 6 11.4417 3.1634 0.0793 18 1 11.1331 4.1811 -0.1086 19 6 12.7814 2.8605 0.2006 20 7 13.1572 1.6212 0.4300 21 14 14.0624 4.2106 0.0405 22 1 13.8310 5.2390 1.0864 23 1 15.4182 3.6290 0.2101 24 1 13.9563 4.8368 -1.3018 25 6 5.7437 1.1430 2.0925 26 6 4.6348 0.4730 2.5754 27 6 3.4386 0.5312 1.8883 28 6 3.3367 1.2642 0.7158 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.2538 2.0059 -1.8956 33 1 2.7101 0.9852 -2.0163 34 1 2.6506 3.7791 -0.7746 35 1 3.1975 3.4231 -2.4330 36 1 6.6619 3.4168 -0.0141 37 1 8.9542 3.4676 -0.4637 38 1 9.8993 0.2261 -0.7738 39 1 11.6422 0.5873 -0.7433 40 1 10.5692 1.4729 -1.8533 41 1 14.0997 1.4082 0.5157 42 1 6.6805 1.0948 2.6277 43 1 4.7057 -0.1000 3.4881 44 1 2.5765 0.0020 2.2666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448051505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:43 Heat of formation + Delta-G solvation = -80.929827 kcal Electronic energy + Delta-G solvation = -27000.791256 eV Core-core repulsion = 23111.791671 eV Total energy + Delta-G solvation = -3888.999585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04485 -39.49787 -38.05346 -37.37903 -35.09475 -34.19048 -32.77287 -32.25063 -30.65733 -29.53064 -28.02058 -27.20507 -25.21573 -25.07787 -23.83589 -22.72798 -21.06797 -20.42410 -19.60326 -18.27079 -17.80438 -17.48187 -16.97015 -16.15797 -16.00852 -15.63085 -15.32928 -14.93420 -14.86666 -14.61827 -14.45891 -14.00927 -13.69712 -13.39449 -13.21686 -13.13659 -12.79718 -12.36430 -12.30960 -11.95296 -11.79616 -11.66686 -11.16678 -11.10524 -11.07009 -10.96068 -10.78350 -10.72138 -10.31000 -10.19850 -10.13180 -9.81775 -9.29716 -9.01526 -8.53578 -8.33474 -7.98745 -7.53316 -6.09646 -4.18742 1.36420 1.48895 3.05465 3.26060 3.27639 3.32765 3.34575 3.46349 3.75989 4.09829 4.33554 4.36087 4.37899 4.52194 4.77175 4.88549 4.92572 4.98393 5.02312 5.17655 5.22534 5.23516 5.27504 5.32182 5.34565 5.59674 5.71109 5.73656 5.94792 6.26884 6.38298 6.63197 6.77543 6.84600 6.85515 7.02417 7.04451 7.17609 7.29249 7.46584 7.53032 7.65506 7.88541 8.05340 8.19094 8.77216 8.90492 9.30436 9.50099 10.96358 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.002651 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.494523 B =10559.289618 C =11040.776022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.142 3.858 4 H 0.071 0.929 5 C -0.183 4.183 6 C 0.067 3.933 7 O -0.313 6.313 8 C 0.108 3.892 9 C 0.153 3.847 10 N -0.687 5.687 11 C 0.694 3.306 12 O -0.584 6.584 13 N -0.719 5.719 14 C 0.281 3.719 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.534 4.534 18 H 0.060 0.940 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.085 4.085 26 C -0.135 4.135 27 C -0.088 4.088 28 C -0.156 4.156 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.404 0.596 37 H 0.386 0.614 38 H 0.015 0.985 39 H 0.090 0.910 40 H 0.025 0.975 41 H 0.265 0.735 42 H 0.152 0.848 43 H 0.126 0.874 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.827 2.410 -1.630 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.291 6.291 3 C 0.084 3.916 4 H 0.089 0.911 5 C -0.220 4.220 6 C -0.008 4.008 7 O -0.227 6.227 8 C 0.060 3.940 9 C 0.056 3.944 10 N -0.335 5.335 11 C 0.395 3.605 12 O -0.463 6.463 13 N -0.370 5.370 14 C 0.179 3.821 15 H 0.067 0.933 16 C -0.207 4.207 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.106 4.106 26 C -0.153 4.153 27 C -0.107 4.107 28 C -0.158 4.158 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.239 0.761 37 H 0.218 0.782 38 H 0.035 0.965 39 H 0.109 0.891 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.170 0.830 43 H 0.144 0.856 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.091 1.260 -1.182 25.150 hybrid contribution 0.096 1.605 -0.698 1.752 sum -24.995 2.865 -1.880 25.229 Atomic orbital electron populations 1.22829 0.81129 1.02977 0.99918 1.88034 1.19403 1.26739 1.94877 1.20636 0.91869 0.85177 0.93898 0.91081 1.22744 1.01601 0.99560 0.98138 1.22895 0.82097 0.95506 1.00349 1.86000 1.30553 1.68772 1.37367 1.18377 0.93489 0.95809 0.86288 1.16996 0.84839 0.99591 0.92963 1.42607 1.04093 1.24375 1.62469 1.16140 0.80026 0.83662 0.80699 1.90854 1.84332 1.25040 1.46039 1.45841 1.07446 1.28260 1.55439 1.18667 0.74863 0.92233 0.96301 0.93259 1.22106 1.02460 0.98133 0.97996 1.21179 0.90905 0.94038 1.51090 0.92137 1.24883 0.98378 0.95754 0.94707 1.69902 1.16704 1.17600 1.47843 0.86490 0.80268 0.81605 0.78606 1.20202 1.21140 1.20191 1.21365 0.99917 0.95942 0.93336 1.20965 0.92307 1.01209 1.00861 1.20725 0.98103 0.97940 0.93914 1.19293 0.93924 1.03878 0.98707 0.89416 0.93899 0.94091 0.89935 0.89279 0.91864 0.87218 0.76104 0.78167 0.96549 0.89123 0.95546 0.92513 0.83003 0.85556 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.28 16 2 O -0.37 -3.92 9.64 -35.23 -0.34 -4.26 16 3 C 0.14 1.42 2.73 -27.80 -0.08 1.34 16 4 H 0.07 0.57 7.78 -51.93 -0.40 0.17 16 5 C -0.18 -1.57 5.81 -26.48 -0.15 -1.72 16 6 C 0.07 0.57 7.03 37.37 0.26 0.84 16 7 O -0.31 -4.04 9.73 -19.50 -0.19 -4.23 16 8 C 0.11 1.56 6.49 -39.06 -0.25 1.31 16 9 C 0.15 2.54 6.33 -83.40 -0.53 2.01 16 10 N -0.69 -11.70 5.16 -14.05 -0.07 -11.77 16 11 C 0.69 14.74 8.37 -86.91 -0.73 14.01 16 12 O -0.58 -14.43 13.42 5.28 0.07 -14.36 16 13 N -0.72 -15.48 5.07 -59.81 -0.30 -15.78 16 14 C 0.28 7.29 2.56 -69.08 -0.18 7.11 16 15 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 16 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 17 C -0.53 -14.25 8.73 -34.43 -0.30 -14.55 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 20 N -0.88 -25.07 11.32 55.43 0.63 -24.45 16 21 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.08 -1.41 8.69 -39.47 -0.34 -1.76 16 26 C -0.13 -1.86 10.04 -39.63 -0.40 -2.25 16 27 C -0.09 -1.12 9.30 -39.49 -0.37 -1.49 16 28 C -0.16 -2.03 5.58 -104.45 -0.58 -2.61 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 5.73 8.51 -40.82 -0.35 5.38 16 37 H 0.39 7.17 8.56 -40.82 -0.35 6.82 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.15 2.84 6.19 -52.49 -0.32 2.52 16 43 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 44 H 0.12 1.34 7.75 -52.49 -0.41 0.93 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -32.66 361.99 -8.38 -41.04 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.31 Total: 10.88 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.30 Total: 1.75 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.25 Total: -52.00 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.46 Total: -22.86 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.66 -8.38 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448051505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.889 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds