Wall clock time and date at job start Tue Mar 31 2020 13:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99624 * 2 1 4 4 H 1.09000 * 109.44064 * 29.91303 * 3 2 1 5 5 C 1.53075 * 109.43616 * 269.99642 * 3 2 1 6 6 C 1.53406 * 108.28496 * 191.68350 * 5 3 2 7 7 O 1.42824 * 108.37147 * 64.66873 * 6 5 3 8 8 C 1.35923 * 117.87125 * 310.93138 * 7 6 5 9 9 C 1.39711 * 118.48802 * 196.91310 * 8 7 6 10 10 N 1.40162 * 119.95351 * 0.24787 * 9 8 7 11 11 C 1.34781 * 120.00055 * 214.97484 * 10 9 8 12 12 O 1.21593 * 120.00150 * 355.52010 * 11 10 9 13 13 N 1.34776 * 120.00029 * 175.51129 * 11 10 9 14 14 C 1.46495 * 119.99790 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47339 * 325.00038 * 14 13 11 16 16 C 1.53001 * 109.47154 * 85.00516 * 14 13 11 17 17 C 1.50708 * 109.46887 * 205.00321 * 14 13 11 18 18 H 1.07993 * 120.00157 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99872 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99872 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99814 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.46990 * 60.00092 * 21 19 17 23 23 H 1.48504 * 109.46707 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47043 * 299.99456 * 21 19 17 25 25 C 1.38515 * 120.09480 * 180.52161 * 9 8 7 26 26 C 1.38260 * 119.87355 * 359.50903 * 25 9 8 27 27 C 1.38072 * 120.03986 * 0.47468 * 26 25 9 28 28 C 1.38159 * 121.84277 * 17.10969 * 8 7 6 29 29 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47671 * 300.00069 * 1 2 3 31 31 H 1.09001 * 109.46869 * 59.99909 * 1 2 3 32 32 H 1.08998 * 109.69539 * 71.98462 * 5 3 2 33 33 H 1.09002 * 109.73379 * 311.39889 * 5 3 2 34 34 H 1.09007 * 109.68559 * 304.94791 * 6 5 3 35 35 H 1.08998 * 109.71845 * 184.41011 * 6 5 3 36 36 H 0.96998 * 120.00213 * 34.97470 * 10 9 8 37 37 H 0.96999 * 119.99557 * 0.02562 * 13 11 10 38 38 H 1.09000 * 109.46889 * 299.99855 * 16 14 13 39 39 H 1.09005 * 109.46898 * 179.97438 * 16 14 13 40 40 H 1.09005 * 109.47143 * 59.99950 * 16 14 13 41 41 H 0.97004 * 119.99616 * 180.02562 * 20 19 17 42 42 H 1.07999 * 120.06128 * 179.76473 * 25 9 8 43 43 H 1.08005 * 119.97638 * 180.19486 * 26 25 9 44 44 H 1.07998 * 119.77571 * 179.67756 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3438 1.9993 0.5126 5 6 2.2174 1.7708 -1.4435 6 6 3.0990 3.0260 -1.4227 7 8 4.3861 2.6639 -0.9205 8 6 4.4391 1.9393 0.2283 9 6 5.6493 1.8805 0.9238 10 7 6.7712 2.5641 0.4352 11 6 8.0018 2.0366 0.5897 12 8 8.1478 1.0092 1.2235 13 7 9.0707 2.6479 0.0416 14 6 10.4082 2.0742 0.2091 15 1 10.4859 1.6152 1.1947 16 6 10.6468 1.0138 -0.8677 17 6 11.4417 3.1634 0.0793 18 1 11.1331 4.1811 -0.1086 19 6 12.7814 2.8605 0.2006 20 7 13.1572 1.6212 0.4300 21 14 14.0624 4.2106 0.0405 22 1 13.8310 5.2390 1.0864 23 1 15.4182 3.6290 0.2101 24 1 13.9563 4.8368 -1.3018 25 6 5.7437 1.1430 2.0925 26 6 4.6348 0.4730 2.5754 27 6 3.4386 0.5312 1.8883 28 6 3.3367 1.2642 0.7158 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.2538 2.0059 -1.8956 33 1 2.7101 0.9852 -2.0163 34 1 2.6506 3.7791 -0.7746 35 1 3.1975 3.4231 -2.4330 36 1 6.6619 3.4168 -0.0141 37 1 8.9542 3.4676 -0.4637 38 1 9.8993 0.2261 -0.7738 39 1 11.6422 0.5873 -0.7433 40 1 10.5692 1.4729 -1.8533 41 1 14.0997 1.4082 0.5157 42 1 6.6805 1.0948 2.6277 43 1 4.7057 -0.1000 3.4881 44 1 2.5765 0.0020 2.2666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448051505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:42 Heat of formation + Delta-G solvation = -103.709049 kcal Electronic energy + Delta-G solvation = -27001.779037 eV Core-core repulsion = 23111.791671 eV Total energy + Delta-G solvation = -3889.987366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11403 -40.95988 -38.85134 -38.50932 -36.85973 -35.70741 -34.37128 -33.48758 -31.62982 -31.17214 -29.54138 -27.78757 -27.33106 -25.82710 -24.80245 -24.16745 -22.55040 -21.78207 -21.04930 -19.74594 -19.05036 -18.60801 -17.83146 -17.69804 -17.16418 -16.91998 -16.46336 -16.25490 -16.07725 -15.82089 -15.59599 -15.45578 -15.13487 -14.63297 -14.36423 -14.25470 -13.91179 -13.76240 -13.60894 -13.18300 -12.98013 -12.89802 -12.84458 -12.74186 -12.61331 -12.26622 -12.13928 -11.89569 -11.84047 -11.69667 -11.38762 -11.11063 -11.02460 -10.60633 -10.58207 -9.84893 -9.40575 -8.80264 -8.16521 -6.34125 0.25100 0.36327 1.45749 1.48591 1.56100 1.73544 2.16375 2.27915 2.42921 2.62048 2.99436 3.13730 3.43047 3.58633 3.68657 3.79738 4.04181 4.14242 4.26910 4.37197 4.41349 4.47645 4.57167 4.60761 4.65465 4.68304 4.75114 4.91573 4.92911 4.95012 5.04358 5.08880 5.13853 5.32747 5.38654 5.52762 5.56657 5.62143 5.65941 5.84268 5.85907 6.09126 6.22345 6.25868 6.43587 6.73056 7.22666 7.34394 7.67817 8.89922 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.002651 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.494523 B =10559.289618 C =11040.776022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.398 6.398 3 C 0.141 3.859 4 H 0.098 0.902 5 C -0.178 4.178 6 C 0.058 3.942 7 O -0.329 6.329 8 C 0.112 3.888 9 C 0.119 3.881 10 N -0.669 5.669 11 C 0.693 3.307 12 O -0.625 6.625 13 N -0.714 5.714 14 C 0.290 3.710 15 H 0.001 0.999 16 C -0.134 4.134 17 C -0.547 4.547 18 H 0.074 0.926 19 C 0.014 3.986 20 N -0.917 5.917 21 Si 0.976 3.024 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.108 4.108 26 C -0.138 4.138 27 C -0.080 4.080 28 C -0.160 4.160 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.418 0.582 37 H 0.403 0.597 38 H 0.008 0.992 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.266 0.734 42 H 0.121 0.879 43 H 0.145 0.855 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.518 4.198 -2.850 28.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.318 6.318 3 C 0.083 3.917 4 H 0.115 0.885 5 C -0.215 4.215 6 C -0.016 4.016 7 O -0.243 6.243 8 C 0.065 3.935 9 C 0.023 3.977 10 N -0.318 5.318 11 C 0.394 3.606 12 O -0.506 6.506 13 N -0.367 5.367 14 C 0.186 3.814 15 H 0.019 0.981 16 C -0.193 4.193 17 C -0.585 4.585 18 H 0.092 0.908 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.800 3.200 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.129 4.129 26 C -0.156 4.156 27 C -0.099 4.099 28 C -0.162 4.162 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.151 0.849 36 H 0.255 0.745 37 H 0.237 0.763 38 H 0.027 0.973 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.163 0.837 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.862 3.094 -2.428 28.138 hybrid contribution 0.733 0.992 -0.314 1.273 sum -27.129 4.086 -2.742 27.572 Atomic orbital electron populations 1.23043 0.79069 1.03984 1.01328 1.87993 1.21684 1.27009 1.95078 1.20743 0.90521 0.85793 0.94598 0.88455 1.22722 1.02998 0.98675 0.97124 1.23301 0.80426 0.96036 1.01881 1.85971 1.33483 1.68381 1.36488 1.18348 0.92840 0.95846 0.86498 1.17232 0.85433 1.01109 0.93941 1.42245 1.02862 1.24730 1.61985 1.16234 0.81016 0.83173 0.80194 1.90830 1.85187 1.26950 1.47600 1.45450 1.06282 1.28894 1.56053 1.18256 0.76994 0.92340 0.93784 0.98136 1.21930 1.00894 0.97883 0.98598 1.21493 0.91317 0.94631 1.51088 0.90773 1.25823 1.00621 0.98070 0.94119 1.70056 1.17152 1.19776 1.48570 0.85345 0.77082 0.78466 0.79109 1.19558 1.21153 1.18839 1.21234 0.99773 0.97770 0.94094 1.21167 0.91938 1.00867 1.01669 1.21035 0.98165 0.97167 0.93516 1.19774 0.95102 1.02580 0.98698 0.88761 0.92560 0.92546 0.86598 0.91545 0.89794 0.84866 0.74475 0.76251 0.97283 0.91209 0.94194 0.92484 0.86131 0.83718 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.43 16 2 O -0.40 -7.26 9.64 -148.98 -1.44 -8.69 16 3 C 0.14 2.37 2.73 29.90 0.08 2.45 16 4 H 0.10 1.14 7.78 -2.39 -0.02 1.12 16 5 C -0.18 -2.47 5.81 30.76 0.18 -2.29 16 6 C 0.06 0.80 7.03 72.12 0.51 1.31 16 7 O -0.33 -7.97 9.73 -92.69 -0.90 -8.88 16 8 C 0.11 3.17 6.49 22.61 0.15 3.32 16 9 C 0.12 4.04 6.33 38.23 0.24 4.28 16 10 N -0.67 -23.39 5.16 -316.61 -1.63 -25.02 16 11 C 0.69 30.73 8.37 179.05 1.50 32.23 16 12 O -0.62 -32.88 13.42 -4.01 -0.05 -32.93 16 13 N -0.71 -31.58 5.07 -461.40 -2.34 -33.92 16 14 C 0.29 15.59 2.56 44.25 0.11 15.70 16 15 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 16 C -0.13 -7.11 9.26 71.98 0.67 -6.45 16 17 C -0.55 -29.47 8.73 25.60 0.22 -29.24 16 18 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 19 C 0.01 0.75 5.30 84.66 0.45 1.20 16 20 N -0.92 -53.38 11.32 21.45 0.24 -53.13 16 21 Si 0.98 42.38 29.54 68.60 2.03 44.40 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 C -0.11 -3.79 8.69 22.34 0.19 -3.59 16 26 C -0.14 -3.82 10.04 22.24 0.22 -3.59 16 27 C -0.08 -1.92 9.30 22.33 0.21 -1.72 16 28 C -0.16 -3.87 5.58 -19.76 -0.11 -3.98 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.39 8.08 -2.39 -0.02 0.37 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.42 11.84 8.51 -92.71 -0.79 11.05 16 37 H 0.40 14.92 8.56 -92.71 -0.79 14.13 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.07 3.99 6.07 -2.38 -0.01 3.98 16 40 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.12 4.95 6.19 -2.91 -0.02 4.93 16 43 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.15 2.80 7.75 -2.91 -0.02 2.78 16 Total: -1.00 -74.05 361.99 1.21 -72.84 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.54 Total: 34.27 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.85 Total: 11.06 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.73 Total: -112.08 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -2.39 Total: -50.50 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -74.05 1.21 -72.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448051505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.865 kcal (2) G-P(sol) polarization free energy of solvation -74.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds